Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8244885.1

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 321

Gene Structure 320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8244885.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 236 bp

atggtgaactgggattgtgtgttgcggaccgcaatatctggtattgaggtggatcctccaattgaaataaaagaaaggacactactagaagtttctggatatgagaaccctgtcgaatttggtgttatgactttatttgcatatcctgtggaagaagatttaggtgagatagttgtagcaactacccgaatagagacgatgctcggtgatactgctatcgcagtgcatcctgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

78

Amino Acids

8.62

Weight (kDa)

4.1

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	25, 30
AclWI	GGATC	2 cut(s)	47, 60
AcsI	RAATTY	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	47, 60
ApoI	RAATTY	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	3 cut(s)	16, 176, 218
AvaII	GGWCC	1 cut(s)	27
BamHI	GGATCC	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	54
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	14
BseGI	GGATG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	2 cut(s)	25, 30
BspLI	GGNNCC	1 cut(s)	54
BspPI	GGATC	2 cut(s)	47, 60
BsrI	ACTGG	1 cut(s)	14
BssMI	GATC	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	27
CpoI	CGGWCCG	1 cut(s)	27
CspI	CGGWCCG	1 cut(s)	27
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	188
FaiI	YATR	3 cut(s)	102, 128, 142
FokI	GGATG	1 cut(s)	213
FspBI	CTAG	1 cut(s)	86
HphI	GGTGA	3 cut(s)	16, 176, 218
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188III	TCNNGA	2 cut(s)	96, 230
Hpy8I	GTNNAC	1 cut(s)	7
HpyCH4V	TGCA	2 cut(s)	140, 226
Kzo9I	GATC	1 cut(s)	52
LpnPI	CCDG	4 cut(s)	24, 81, 123, 159
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	1 cut(s)	86
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	2 cut(s)	164, 167
MfeI	CAATTG	1 cut(s)	60
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	2 cut(s)	60, 116
MnlI	CCTC	2 cut(s)	40, 66
MslI	CAYNNNNRTG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	60
NdeII	GATC	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	231
Rsr2I	CGGWCCG	1 cut(s)	27
RsrII	CGGWCCG	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	27
SetI	ASST	2 cut(s)	51, 166
SfaNI	GCATC	1 cut(s)	189
SgeI	CNNG	8 cut(s)	22, 51, 98, 108, 122, 158, 198, 215
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	2 cut(s)	60, 116
SsiI	CCGC	2 cut(s)	25, 30
SspMI	CTAG	1 cut(s)	86
TaqI	TCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	60, 116
TscAI	CASTG	1 cut(s)	228
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	1 cut(s)	116
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.