Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

69320086 .. 69320688

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52092

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGAAATGAAGCTCTTAATGCTGTCGCTGATGATGAAAATAGGAAGCTGGAGATTATCCCAAGACAGTATACTGCTGAATGGAAGAGGGGATATTTACTCAAAAAATGGAAATGTGAACATGTTTACTTGTTTACTTGTTTTGCTCTCTGTAATCACAGATGGCTTTGTAACATTAGTGATTGGTGTGTCTCGAGGCAACTTTGGTGGAGTCACAGTGTTCTGGCACGGTATGTTGTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

81

Amino Acids

9.82

Weight (kDa)

8.68

Isoelectric Point (pI)

25.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	121
AluBI	AGCT	2 cut(s)	14, 49
AluI	AGCT	2 cut(s)	14, 49
Alw26I	GTCTC	1 cut(s)	196
Ama87I	CYCGRG	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	193
BccI	CCATC	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
BsiHKCI	CYCGRG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	196
BsoBI	CYCGRG	1 cut(s)	193
BssNAI	GTATAC	1 cut(s)	72
Bst1107I	GTATAC	1 cut(s)	72
Bst4CI	ACNGT	3 cut(s)	69, 218, 231
Bst6I	CTCTTC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	125
BstZ17I	GTATAC	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	223
CspCI	CAANNNNNGTGG	2 cut(s)	188, 223
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	3 cut(s)	14, 49, 166
CviKI_1	RGCY	3 cut(s)	14, 49, 166
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	193
FaeI	CATG	1 cut(s)	125
FaiI	YATR	3 cut(s)	72, 123, 234
FatI	CATG	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	71
GsuI	CTGGAG	1 cut(s)	71
Hin1II	CATG	1 cut(s)	125
HinfI	GANTC	1 cut(s)	211
Hpy166II	GTNNAC	4 cut(s)	72, 119, 127, 135
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	4 cut(s)	72, 119, 127, 135
HpyCH4III	ACNGT	3 cut(s)	69, 218, 231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
Hsp92II	CATG	1 cut(s)	125
LpnPI	CCDG	2 cut(s)	35, 209
MaeIII	GTNAC	2 cut(s)	170, 212
MboII	GAAGA	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	2 cut(s)	81, 189
MseI	TTAA	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	20
NlaIII	CATG	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	212
NspI	RCATGY	1 cut(s)	125
PaeR7I	CTCGAG	1 cut(s)	193
PciI	ACATGT	1 cut(s)	121
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PscI	ACATGT	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	18
SchI	GAGTC	1 cut(s)	220
SetI	ASST	2 cut(s)	16, 51
Sfr274I	CTCGAG	1 cut(s)	193
SgeI	CNNG	9 cut(s)	62, 75, 134, 142, 150, 205, 207, 236, 240
SlaI	CTCGAG	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
TaaI	ACNGT	3 cut(s)	69, 218, 231
TaqI	TCGA	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	24, 51
TspRI	CASTG	1 cut(s)	223
XceI	RCATGY	1 cut(s)	125
XhoI	CTCGAG	1 cut(s)	193
XmiI	GTMKAC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.