Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000115.1

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1829

Gene Structure 1828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000115.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 872 bp

atgattcgtgatgcgcatgggcgtaaaatgtccaagtccttggggaatgtcattgatcctcttgatgtgatcaatggtgtttcgctggaagatctacacaagaagctttcagagggaaatttggacctgagggaaatagctatagccaaagaaggccaaaaaaaggattttcctgatggtattgctgaatgtggttctgatgcgctacattttgctctggtctcatacactgctcagtctgataagataaatctggatatccaaagggttgtcggttaccggcagtggtgtaataaactttggaacgccgtacgatttgctatgagcaaacttggggatgattatgttccgccgtcaacagtaatcccggatgtgcttccatttagttgccggtggatactctcggtacttaataaagccatctccaaaactattttgtcattggaatcgtacgagttttcagatgcagccactgcagtgtatgcttggtggcagtaccaattgtgtgatgtgttcattgaagccataaaaccctactttgctggaaacaatccaaagtttgcatctgaaaggggttttgcacaagacacgctctggttgtgtctggatactggactacggctgcttcacccatttatgcctttcgttaccgaagaactatggcagcgtctcccatcatccaagcatcacaatagggcagcatcaattatgatatgcgactacccatccatcgtggagtgctggacaaatgaaagggtggagtctgaaatgagtcttattgactctattgttagatctctccggtcactgtctcaagagagtcgtgaaagacgaccagcttttgtgctgtgtcgatcaatgtcagatcgaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

290

Amino Acids

33.04

Weight (kDa)

6.1

Isoelectric Point (pI)

56.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	15
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	4 cut(s)	312, 408, 452, 497
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	521
AleI	CACNNNNGTG	1 cut(s)	476
AluBI	AGCT	3 cut(s)	106, 140, 839
AluI	AGCT	3 cut(s)	106, 140, 839
Alw26I	GTCTC	3 cut(s)	226, 674, 816
AlwI	GGATC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	4 cut(s)	467, 622, 664, 698
ApoI	RAATTY	1 cut(s)	118
AspLEI	GCGC	2 cut(s)	16, 205
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	620
AvaII	GGWCC	1 cut(s)	124
AxyI	CCTNAGG	1 cut(s)	128
BbvI	GCAGC	4 cut(s)	479, 609, 676, 710
BccI	CCATC	5 cut(s)	170, 428, 682, 733, 737
BceAI	ACGGC	3 cut(s)	293, 337, 635
BciVI	GTATCC	2 cut(s)	390, 601
BclI	TGATCA	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	3 cut(s)	226, 674, 816
BfmI	CTRYAG	2 cut(s)	141, 474
BfuI	GTATCC	2 cut(s)	390, 601
BglII	AGATCT	2 cut(s)	91, 794
BisI	GCNGC	4 cut(s)	468, 623, 665, 699
BlsI	GCNGC	4 cut(s)	469, 624, 666, 700
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	5 cut(s)	190, 454, 572, 694, 710
BpuEI	CTTGAG	1 cut(s)	798
BpuMI	CCSGG	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	801
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse118I	RCCGGY	2 cut(s)	279, 390
Bse1I	ACTGG	1 cut(s)	616
Bse21I	CCTNAGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	4 cut(s)	343, 376, 677, 725
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	119, 248
BseNI	ACTGG	1 cut(s)	616
BseXI	GCAGC	4 cut(s)	479, 609, 676, 710
BshFI	GGCC	1 cut(s)	156
BsiSI	CCGG	4 cut(s)	280, 368, 391, 802
BsiWI	CGTACG	2 cut(s)	310, 450
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	3 cut(s)	226, 674, 816
BsmBI	CGTCTC	1 cut(s)	674
BsnI	GGCC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	226
Bsp143I	GATC	6 cut(s)	55, 69, 91, 794, 854, 865
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	2 cut(s)	120, 247
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	226
BsrFI	RCCGGY	2 cut(s)	279, 390
BsrI	ACTGG	1 cut(s)	616
BssAI	RCCGGY	2 cut(s)	279, 390
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	6 cut(s)	55, 69, 91, 794, 854, 865
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	361, 810
BstAPI	GCANNNNNTGC	2 cut(s)	473, 482
BstDEI	CTNAG	2 cut(s)	128, 234
BstEII	GGTNACC	1 cut(s)	275
BstF5I	GGATG	4 cut(s)	343, 376, 677, 725
BstHHI	GCGC	2 cut(s)	16, 205
BstKTI	GATC	6 cut(s)	58, 72, 94, 797, 857, 868
BstMAI	GTCTC	3 cut(s)	226, 674, 816
BstMBI	GATC	6 cut(s)	55, 69, 91, 794, 854, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	473, 482
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	2 cut(s)	141, 474
BstV1I	GCAGC	4 cut(s)	479, 609, 676, 710
BstX2I	RGATCY	2 cut(s)	91, 794
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	2 cut(s)	91, 794
Bsu36I	CCTNAGG	1 cut(s)	128
BsuI	GTATCC	2 cut(s)	390, 601
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	4 cut(s)	343, 376, 677, 725
BtsI	GCAGTG	4 cut(s)	228, 290, 471, 483
BtsIMutI	CAGTG	5 cut(s)	228, 290, 471, 483, 806
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	2 cut(s)	16, 205
Cfr10I	RCCGGY	2 cut(s)	279, 390
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	656
Csp6I	GTAC	4 cut(s)	311, 407, 451, 496
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	9 cut(s)	106, 140, 146, 156, 419, 470, 524, 622, 839
CviKI_1	RGCY	9 cut(s)	106, 140, 146, 156, 419, 470, 524, 622, 839
CviQI	GTAC	4 cut(s)	311, 407, 451, 496
DdeI	CTNAG	2 cut(s)	128, 234
DpnI	GATC	6 cut(s)	57, 71, 93, 796, 856, 867
DpnII	GATC	6 cut(s)	55, 69, 91, 794, 854, 865
EciI	GGCGGA	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	124
Eco81I	CCTNAGG	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	674
FaeI	CATG	1 cut(s)	20
FatI	CATG	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	4 cut(s)	468, 623, 665, 699
FokI	GGATG	4 cut(s)	350, 383, 664, 712
Fsp4HI	GCNGC	4 cut(s)	468, 623, 665, 699
FspAI	RTGCGCAY	1 cut(s)	15
FspI	TGCGCA	1 cut(s)	15
GlaI	GCGC	2 cut(s)	15, 204
GluI	GCNGC	4 cut(s)	468, 623, 665, 699
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	4 cut(s)	280, 368, 391, 802
HgaI	GACGC	1 cut(s)	656
HhaI	GCGC	2 cut(s)	16, 205
Hin1II	CATG	1 cut(s)	20
Hin6I	GCGC	2 cut(s)	14, 203
HinP1I	GCGC	2 cut(s)	14, 203
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	6 cut(s)	4, 446, 761, 772, 782, 820
HpaII	CCGG	4 cut(s)	280, 368, 391, 802
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	7 cut(s)	112, 199, 241, 463, 568, 766, 865
Hpy188III	TCNNGA	8 cut(s)	8, 62, 173, 254, 605, 815, 824, 869
Hpy8I	GTNNAC	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	2 cut(s)	361, 810
HpyCH4V	TGCA	4 cut(s)	467, 476, 563, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	473, 482
HpyF3I	CTNAG	2 cut(s)	128, 234
Hsp92II	CATG	1 cut(s)	20
HspAI	GCGC	2 cut(s)	14, 203
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	6 cut(s)	55, 69, 91, 794, 854, 865
Lsp1109I	GCAGC	4 cut(s)	479, 609, 676, 710
LweI	GCATC	5 cut(s)	190, 454, 572, 694, 710
MaeIII	GTNAC	3 cut(s)	275, 646, 804
MalI	GATC	6 cut(s)	57, 71, 93, 796, 856, 867
MboI	GATC	6 cut(s)	55, 69, 91, 794, 854, 865
MboII	GAAGA	2 cut(s)	101, 665
MfeI	CAATTG	1 cut(s)	500
MflI	RGATCY	2 cut(s)	91, 794
MluCI	AATT	3 cut(s)	118, 500, 705
MlyI	GAGTC	4 cut(s)	770, 776, 781, 829
MnlI	CCTC	3 cut(s)	69, 106, 123
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	476
MspI	CCGG	4 cut(s)	280, 368, 391, 802
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	500
MwoI	GCNNNNNNNGC	2 cut(s)	473, 482
NciI	CCSGG	1 cut(s)	368
NdeII	GATC	6 cut(s)	55, 69, 91, 794, 854, 865
NlaIII	CATG	1 cut(s)	20
NmuCI	GTSAC	1 cut(s)	804
NsbI	TGCGCA	1 cut(s)	15
OliI	CACNNNNGTG	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	829
PfeI	GAWTC	2 cut(s)	4, 446
Pfl23II	CGTACG	2 cut(s)	310, 450
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	4 cut(s)	469, 624, 666, 700
PleI	GAGTC	4 cut(s)	769, 776, 780, 828
PpsI	GAGTC	4 cut(s)	769, 776, 780, 828
PspEI	GGTNACC	1 cut(s)	275
PspLI	CGTACG	2 cut(s)	310, 450
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	478
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	91, 794
RsaI	GTAC	4 cut(s)	312, 408, 452, 497
RsaNI	GTAC	4 cut(s)	311, 407, 451, 496
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	4 cut(s)	468, 623, 665, 699
Sau3AI	GATC	6 cut(s)	55, 69, 91, 794, 854, 865
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	4 cut(s)	770, 776, 781, 829
ScrFI	CCNGG	1 cut(s)	368
SetI	ASST	4 cut(s)	108, 129, 142, 841
SfaNI	GCATC	5 cut(s)	190, 454, 572, 694, 710
SfcI	CTRYAG	2 cut(s)	141, 474
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	813
SmoI	CTYRAG	1 cut(s)	813
Sse9I	AATT	3 cut(s)	118, 500, 705
SsiI	CCGC	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	361, 810
TaqI	TCGA	2 cut(s)	853, 868
TasI	AATT	3 cut(s)	118, 500, 705
TfiI	GAWTC	2 cut(s)	4, 446
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	5 cut(s)	235, 290, 478, 483, 813
TseFI	GTSAC	1 cut(s)	804
TseI	GCWGC	4 cut(s)	467, 622, 664, 698
Tsp45I	GTSAC	1 cut(s)	804
TspDTI	ATGAA	2 cut(s)	505, 765
TspRI	CASTG	5 cut(s)	235, 290, 478, 483, 813
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.