Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

9432418 .. 9433190

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCGTTTGCATTATCGGATGCTGCCAACAGTGTATGCTTGGTGGCAATACCAGTTCTGTGATGTATTTATCGAGGCAATTAAGCCTTATTTTTCTGCTGACACTCAAAGAAGGATTCATGCACAAGATGCTCTCTGGGTGTGTCTCGAGACTGGTTTGAGATTGCTGCATCCATTTATGCCTTATATTACAGAAGAGCTGTGGCAGCGGTTGCCTTCATCGCAAGACTCTGAACGAAAGGCGTCTATCATGATATGTGACTACCCATCTTCCATAGAGATGTGGACAAACGAGAAGGTGGAAACTGAAATGGACATGGTTCTAGCGACCGTGAAAACTCTTAGGGCACTGAGAGCTGCAGAGTCGCTAAAGAGACAGAGAAATGAAAAGTTCCATGCGTTTGCTCTGTCTGGAAATGCATTAACACTGGGGATTGTGAAACCACATGAGCTGGAGATCAGAACTCTTGCAAATCTCTCATCCTTTGAGGTTATGTTGAGGGGAGAAGACAAAGCATTTGTAGTGTGTTGGGAGGAAATTGAAATTTGGATTAGTTACAATGTGCTTTATTTTATTTTATGTAAACTATGTCCATCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

200

Amino Acids

23.61

Weight (kDa)

5.98

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anticodon_1	PF08264	8 - 129	7.7e-27	Anticodon-binding domain of tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	543
AcyI	GRCGYC	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	542
AluBI	AGCT	3 cut(s)	199, 356, 451
AluI	AGCT	3 cut(s)	199, 356, 451
Alw26I	GTCTC	3 cut(s)	143, 149, 367
Ama87I	CYCGRG	1 cut(s)	146
ApeKI	GCWGC	4 cut(s)	22, 166, 205, 356
ApoI	RAATTY	1 cut(s)	543
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AvaI	CYCGRG	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	513
BbvI	GCAGC	4 cut(s)	9, 153, 217, 343
BccI	CCATC	2 cut(s)	274, 601
BcoDI	GTCTC	3 cut(s)	143, 149, 367
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	4 cut(s)	23, 167, 206, 357
BlsI	GCNGC	4 cut(s)	24, 168, 207, 358
BmeT110I	CYCGRG	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	437
BmsI	GCATC	3 cut(s)	9, 118, 178
BmuI	ACTGGG	1 cut(s)	437
BpiI	GAAGAC	1 cut(s)	513
BpmI	CTGGAG	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	242
Bse1I	ACTGG	3 cut(s)	52, 157, 432
BseGI	GGATG	3 cut(s)	24, 169, 479
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	3 cut(s)	52, 157, 432
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	4 cut(s)	9, 153, 217, 343
Bsh1285I	CGRYCG	1 cut(s)	330
BsiEI	CGRYCG	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	146
BsmAI	GTCTC	3 cut(s)	143, 149, 367
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	456
BspACI	CCGC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	249
BspMAI	CTGCAG	1 cut(s)	361
BspQI	GCTCTTC	1 cut(s)	189
BsrI	ACTGG	3 cut(s)	52, 157, 432
BssMI	GATC	1 cut(s)	456
BssNI	GRCGYC	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	31, 331
Bst6I	CTCTTC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	242
BstAPI	GCANNNNNTGC	2 cut(s)	128, 211
BstDEI	CTNAG	2 cut(s)	341, 350
BstF5I	GGATG	3 cut(s)	24, 169, 479
BstKTI	GATC	1 cut(s)	459
BstMAI	GTCTC	3 cut(s)	143, 149, 367
BstMBI	GATC	1 cut(s)	456
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 205, 211, 220, 353
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	4 cut(s)	9, 153, 217, 343
BstV2I	GAAGAC	1 cut(s)	513
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	3 cut(s)	24, 169, 479
BtsIMutI	CAGTG	3 cut(s)	36, 347, 425
CciI	TCATGA	1 cut(s)	249
CseI	GACGC	1 cut(s)	231
CviAII	CATG	5 cut(s)	119, 250, 316, 395, 446
CviJI	RGCY	4 cut(s)	85, 199, 356, 451
CviKI_1	RGCY	4 cut(s)	85, 199, 356, 451
DdeI	CTNAG	2 cut(s)	341, 350
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	146
EcoT22I	ATGCAT	1 cut(s)	421
FaeI	CATG	5 cut(s)	122, 253, 319, 398, 449
FatI	CATG	5 cut(s)	118, 249, 315, 394, 445
Fnu4HI	GCNGC	4 cut(s)	23, 167, 206, 357
FokI	GGATG	3 cut(s)	31, 156, 466
Fsp4HI	GCNGC	4 cut(s)	23, 167, 206, 357
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	4 cut(s)	23, 167, 206, 357
GsuI	CTGGAG	1 cut(s)	473
HgaI	GACGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	5 cut(s)	122, 253, 319, 398, 449
HinfI	GANTC	3 cut(s)	115, 227, 362
Hpy166II	GTNNAC	2 cut(s)	285, 584
Hpy188I	TCNGA	3 cut(s)	18, 232, 461
Hpy188III	TCNNGA	4 cut(s)	146, 148, 250, 411
Hpy8I	GTNNAC	2 cut(s)	285, 584
HpyAV	CCTTC	3 cut(s)	105, 225, 289
HpyCH4III	ACNGT	2 cut(s)	31, 331
HpyCH4V	TGCA	6 cut(s)	10, 122, 169, 359, 419, 470
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 205, 211, 220, 353
HpyF3I	CTNAG	2 cut(s)	341, 350
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	5 cut(s)	122, 253, 319, 398, 449
Kzo9I	GATC	1 cut(s)	456
LguI	GCTCTTC	1 cut(s)	189
LpnPI	CCDG	6 cut(s)	65, 121, 138, 396, 413, 437
Lsp1109I	GCAGC	4 cut(s)	9, 153, 217, 343
LweI	GCATC	3 cut(s)	9, 118, 178
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	257, 554
MalI	GATC	1 cut(s)	458
MboI	GATC	1 cut(s)	456
MboII	GAAGA	3 cut(s)	206, 261, 518
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	3 cut(s)	78, 537, 543
MlyI	GAGTC	2 cut(s)	221, 371
MnlI	CCTC	4 cut(s)	67, 481, 492, 526
Mph1103I	ATGCAT	1 cut(s)	421
MseI	TTAA	2 cut(s)	81, 422
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	208
MwoI	GCNNNNNNNGC	5 cut(s)	128, 205, 211, 220, 353
NdeII	GATC	1 cut(s)	456
NlaIII	CATG	5 cut(s)	122, 253, 319, 398, 449
NmuCI	GTSAC	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	421
PaeR7I	CTCGAG	1 cut(s)	146
PagI	TCATGA	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	4 cut(s)	24, 168, 207, 358
PleI	GAGTC	2 cut(s)	221, 370
PpsI	GAGTC	2 cut(s)	221, 370
PstI	CTGCAG	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	81, 422
SatI	GCNGC	4 cut(s)	23, 167, 206, 357
Sau3AI	GATC	1 cut(s)	456
SchI	GAGTC	2 cut(s)	221, 371
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	5 cut(s)	201, 300, 358, 453, 492
SfaNI	GCATC	3 cut(s)	9, 118, 178
SfcI	CTRYAG	1 cut(s)	357
Sfr274I	CTCGAG	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	3 cut(s)	78, 537, 543
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	1 cut(s)	323
TaaI	ACNGT	2 cut(s)	31, 331
TaqI	TCGA	2 cut(s)	72, 147
TasI	AATT	3 cut(s)	78, 537, 543
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	81, 422
Tru9I	TTAA	2 cut(s)	81, 422
TscAI	CASTG	3 cut(s)	36, 354, 432
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	4 cut(s)	22, 166, 205, 356
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	107, 207, 399
TspRI	CASTG	3 cut(s)	36, 354, 432
XapI	RAATTY	1 cut(s)	543
XhoI	CTCGAG	1 cut(s)	146
XspI	CTAG	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.