Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

57794233 .. 57794710

Gene Structure 478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0447300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGGTAGAGTCAGGAGTTCGTCACTTGTTAGTCACCTGAAGAGAGCAGTGAAGAAAGTGAGACTCATTTTGCTTGGCCTTAAACTACAAAGGTGGCGTGTAGGTTCAATTCTTGGATGTGGTGCAACTAAAAGGCGGTGCTTGAGCTTCAATGACAGATTGGGTTTGCAGGGCTGCATAGAAGAAGTTGATACATCTGATGATCAGAATAGCTCCCACTTGAGAAGAGTTCATAGCACAATCAGTCGTTCTTCTTCGATTGATTATCAGGATGTTGATCAAAGGGCTGATGCATTCATTGCTAATTTTCGACGGCAGCTCAGATTAGAGAGACAGGTTTCTCTGGAGCTAAGCTACTGCCGGAAGGAGAGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

125

Amino Acids

14.38

Weight (kDa)

10.4

Isoelectric Point (pI)

63.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF761	PF05553	91 - 117	4.3e-11	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	108, 151
AluBI	AGCT	5 cut(s)	147, 213, 319, 349, 354
AluI	AGCT	5 cut(s)	147, 213, 319, 349, 354
Alw26I	GTCTC	2 cut(s)	55, 325
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	2 cut(s)	174, 316
AsuHPI	GGTGA	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	161, 328
BceAI	ACGGC	1 cut(s)	329
BclI	TGATCA	2 cut(s)	202, 277
BcoDI	GTCTC	2 cut(s)	55, 325
BisI	GCNGC	2 cut(s)	175, 317
BlpI	GCTNAGC	1 cut(s)	350
BlsI	GCNGC	2 cut(s)	176, 318
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	365
Bpu1102I	GCTNAGC	1 cut(s)	350
BpuEI	CTTGAG	2 cut(s)	163, 241
BsaBI	GATNNNNATC	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	297
Bse8I	GATNNNNATC	1 cut(s)	276
BseGI	GGATG	2 cut(s)	122, 277
BseJI	GATNNNNATC	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	161, 328
BshFI	GGCC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	361
BsmAI	GTCTC	2 cut(s)	55, 325
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	202, 277
Bsp1720I	GCTNAGC	1 cut(s)	350
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	297
BssMI	GATC	2 cut(s)	202, 277
Bst6I	CTCTTC	2 cut(s)	35, 220
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	320, 350
BstF5I	GGATG	2 cut(s)	122, 277
BstKTI	GATC	2 cut(s)	205, 280
BstMAI	GTCTC	2 cut(s)	55, 325
BstMBI	GATC	2 cut(s)	202, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	161, 328
BsuRI	GGCC	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	122, 277
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
CviJI	RGCY	8 cut(s)	78, 147, 174, 213, 287, 319, 349, 354
CviKI_1	RGCY	8 cut(s)	78, 147, 174, 213, 287, 319, 349, 354
DdeI	CTNAG	2 cut(s)	320, 350
DpnI	GATC	2 cut(s)	204, 279
DpnII	GATC	2 cut(s)	202, 277
Eam1104I	CTCTTC	2 cut(s)	35, 220
EarI	CTCTTC	2 cut(s)	35, 220
Eco57I	CTGAAG	1 cut(s)	59
EcoT22I	ATGCAT	1 cut(s)	295
FaiI	YATR	2 cut(s)	179, 234
FbaI	TGATCA	2 cut(s)	202, 277
Fnu4HI	GCNGC	2 cut(s)	175, 317
FokI	GGATG	2 cut(s)	129, 284
Fsp4HI	GCNGC	2 cut(s)	175, 317
GluI	GCNGC	2 cut(s)	175, 317
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	361
HinfI	GANTC	2 cut(s)	9, 63
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	1 cut(s)	26
Hpy188I	TCNGA	3 cut(s)	199, 207, 323
Hpy188III	TCNNGA	3 cut(s)	13, 269, 344
Hpy99I	CGWCG	1 cut(s)	315
HpyAV	CCTTC	1 cut(s)	358
HpyCH4V	TGCA	4 cut(s)	125, 169, 177, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	320, 350
Ksp22I	TGATCA	2 cut(s)	202, 277
Kzo9I	GATC	2 cut(s)	202, 277
LmnI	GCTCC	2 cut(s)	218, 346
LpnPI	CCDG	6 cut(s)	50, 155, 254, 320, 329, 374
Lsp1109I	GCAGC	2 cut(s)	161, 328
LweI	GCATC	1 cut(s)	280
MaeIII	GTNAC	2 cut(s)	21, 32
MalI	GATC	2 cut(s)	204, 279
MboI	GATC	2 cut(s)	202, 277
MboII	GAAGA	6 cut(s)	52, 64, 194, 237, 243, 246
MluCI	AATT	2 cut(s)	108, 304
MlyI	GAGTC	2 cut(s)	18, 57
Mph1103I	ATGCAT	1 cut(s)	295
MseI	TTAA	1 cut(s)	81
MspI	CCGG	1 cut(s)	361
Mva1269I	GAATGC	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	2 cut(s)	202, 277
NmuCI	GTSAC	2 cut(s)	21, 32
NsiI	ATGCAT	1 cut(s)	295
PctI	GAATGC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	176, 318
PleI	GAGTC	2 cut(s)	17, 57
PpsI	GAGTC	2 cut(s)	17, 57
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	175, 317
Sau3AI	GATC	2 cut(s)	202, 277
SchI	GAGTC	2 cut(s)	18, 57
SetI	ASST	9 cut(s)	39, 95, 106, 149, 215, 321, 339, 351, 356
SfaNI	GCATC	1 cut(s)	280
SmlI	CTYRAG	2 cut(s)	142, 220
SmoI	CTYRAG	2 cut(s)	142, 220
Sse9I	AATT	2 cut(s)	108, 304
SsiI	CCGC	1 cut(s)	136
TaqI	TCGA	2 cut(s)	257, 310
TasI	AATT	2 cut(s)	108, 304
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	2 cut(s)	21, 32
TseI	GCWGC	2 cut(s)	174, 316
Tsp45I	GTSAC	2 cut(s)	21, 32
TspDTI	ATGAA	2 cut(s)	221, 286
TspRI	CASTG	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.