Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000945.1

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

9777 .. 10420

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000945.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atgaaagatggcgcgcagaactggcggctccggtcatacgcgtggccttcactcgcttatcggattggggattggtatcagtggtgggagacacaaggcttctttatggcagatgctaaaagctccaaacctccccttgcgatggcgttgccgcctccgaatgtcacaggtgcgcttcatataggccatgctctcattacttctattgaggacactataattcactggcggcgaatgtctggcaacaacaccttgtgggtgccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

88

Amino Acids

10.13

Weight (kDa)

9.3

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	259
AccII	CGCG	2 cut(s)	14, 41
AciI	CCGC	3 cut(s)	25, 152, 229
AdeI	CACNNNGTG	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	142
AflIII	ACRYGT	1 cut(s)	39
AluBI	AGCT	1 cut(s)	123
AluI	AGCT	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	83
AoxI	GGCC	2 cut(s)	44, 184
AspLEI	GCGC	3 cut(s)	14, 16, 175
BanI	GGYRCC	1 cut(s)	259
BccI	CCATC	2 cut(s)	2, 136
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BcoDI	GTCTC	1 cut(s)	83
BisI	GCNGC	3 cut(s)	26, 152, 230
BlsI	GCNGC	3 cut(s)	27, 153, 231
BmiI	GGNNCC	2 cut(s)	29, 261
BmsI	GCATC	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	2 cut(s)	26, 230
Bse8I	GATNNNNATC	1 cut(s)	75
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseNI	ACTGG	2 cut(s)	26, 230
BsePI	GCGCGC	1 cut(s)	12
Bsh1236I	CGCG	2 cut(s)	14, 41
BshFI	GGCC	2 cut(s)	46, 186
BshNI	GGYRCC	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	46, 186
BspACI	CCGC	3 cut(s)	25, 152, 229
BspANI	GGCC	2 cut(s)	46, 186
BspFNI	CGCG	2 cut(s)	14, 41
BspLI	GGNNCC	2 cut(s)	29, 261
BspT107I	GGYRCC	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	26, 230
BssHII	GCGCGC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	14
BstFNI	CGCG	2 cut(s)	14, 41
BstHHI	GCGC	3 cut(s)	14, 16, 175
BstMAI	GTCTC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstUI	CGCG	2 cut(s)	14, 41
BsuRI	GGCC	2 cut(s)	46, 186
BtgZI	GCGATG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	86, 223
Cac8I	GCNNGC	1 cut(s)	14
CfoI	GCGC	3 cut(s)	14, 16, 175
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	5 cut(s)	28, 46, 99, 123, 186
CviKI_1	RGCY	5 cut(s)	28, 46, 99, 123, 186
DraIII	CACNNNGTG	1 cut(s)	255
FaeI	CATG	1 cut(s)	191
FaiI	YATR	6 cut(s)	37, 107, 180, 182, 189, 218
FatI	CATG	1 cut(s)	187
Fnu4HI	GCNGC	3 cut(s)	26, 152, 230
Fsp4HI	GCNGC	3 cut(s)	26, 152, 230
GlaI	GCGC	3 cut(s)	13, 15, 174
GluI	GCNGC	3 cut(s)	26, 152, 230
HaeIII	GGCC	2 cut(s)	46, 186
HapII	CCGG	1 cut(s)	31
HhaI	GCGC	3 cut(s)	14, 16, 175
Hin1II	CATG	1 cut(s)	191
Hin6I	GCGC	3 cut(s)	12, 14, 173
HinP1I	GCGC	3 cut(s)	12, 14, 173
HpaII	CCGG	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	63, 159
HpyAV	CCTTC	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	191
HspAI	GCGC	3 cut(s)	12, 14, 173
LmnI	GCTCC	2 cut(s)	33, 128
LpnPI	CCDG	5 cut(s)	7, 44, 153, 211, 225
LweI	GCATC	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	163
MluCI	AATT	1 cut(s)	219
MluI	ACGCGT	1 cut(s)	39
MnlI	CCTC	3 cut(s)	141, 165, 202
MslI	CAYNNNNRTG	1 cut(s)	40
MspI	CCGG	1 cut(s)	31
MvnI	CGCG	2 cut(s)	14, 41
MwoI	GCNNNNNNNGC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	2 cut(s)	29, 261
NmuCI	GTSAC	1 cut(s)	163
PauI	GCGCGC	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	27, 153, 231
PspN4I	GGNNCC	2 cut(s)	29, 261
PteI	GCGCGC	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	40
SatI	GCNGC	3 cut(s)	26, 152, 230
SetI	ASST	4 cut(s)	125, 133, 172, 254
SfaNI	GCATC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	40
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	3 cut(s)	25, 152, 229
TasI	AATT	1 cut(s)	219
TauI	GCSGC	3 cut(s)	28, 154, 232
TscAI	CASTG	2 cut(s)	86, 230
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	17, 167
TspRI	CASTG	2 cut(s)	86, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.