Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

39855833 .. 39869947

Gene Structure 14115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG156700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGATCATCAGAGGTTGCGAAGAGGTAGAGGTTGGTGGTGGCGGCAGGTTGCAGGTTGAAGACGAAGATGGATTTTTTTTTTCCTTTTTGATGAGATCAAAGACGAAGGCGCAGTATTGGGTGGGTATCAGGTTTAGTCTTGTGTCGTATAACATTTTGGCTCAGGCGTATGTGAAGAGCTCCTTGTTTCCCCACTCTCCATCTTCTTGTCTCAAGTGGAAAGCCCGCTCGCAGGCAATTTTGAGTGTTCTCAAGAACCTTGGAGTCGATTCTCTGCCTACAGCATTGCTGAATTGGATGGAAGAAAGAATGCATCCCTTTAATAAGGGCCTCTTCAAAGAAACTAAGACCAATGAGATGTGTCTTAGAATTTGCTCTAGAAGTAAAGATGTTGTGGAGCCTATCATAAAGCCTGAGCGTATACTGCTGAATGGAAGAGATGACTTCGTAACATTAGTGATTGGTGTGTCTCGAGGCAACTTTGGTGGAGTCACCGTGTTCTGGCACGGAAGTGAGGAAGAGGCTCAAGCATTGGCTGATCAAAAATATGAGGGAAAGAAGTTTCGATTAGAACAGGACTCAGATGTGCTTGACAGGCACGATATTCTGTTTTTCTGGGTTGCTGATCGTATGGTGATGCTTGGAAATATATTGGGCGATAATGTTCCCTTTACTAAGATGATTGCCCCTCAACCACAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

234

Amino Acids

26.63

Weight (kDa)

7.67

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	36, 43
AccBSI	CCGCTC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	421
AciI	CCGC	2 cut(s)	42, 226
AcsI	RAATTY	1 cut(s)	369
AfiI	CCNNNNNNNGG	2 cut(s)	232, 501
AgsI	TTSAA	2 cut(s)	59, 337
AleI	CACNNNNGTG	1 cut(s)	510
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	2 cut(s)	215, 474
Ama87I	CYCGRG	1 cut(s)	471
AoxI	GGCC	1 cut(s)	328
ApoI	RAATTY	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	2 cut(s)	484, 646
AvaI	CYCGRG	1 cut(s)	471
BanII	GRGCYC	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	182
BccI	CCATC	3 cut(s)	62, 208, 292
BclI	TGATCA	2 cut(s)	3, 538
BcoDI	GTCTC	2 cut(s)	215, 474
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	279
BfuAI	ACCTGC	2 cut(s)	36, 43
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	399
BmsI	GCATC	2 cut(s)	322, 627
BpiI	GAAGAC	1 cut(s)	66
Bpu10I	CCTNAGC	2 cut(s)	162, 414
BpuEI	CTTGAG	3 cut(s)	197, 236, 510
BsaJI	CCNNGG	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 501
Bse3DI	GCAATG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	2 cut(s)	303, 313
BseLI	CCNNNNNNNGG	2 cut(s)	232, 501
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	3 cut(s)	176, 405, 594
BshFI	GGCC	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	471
BslI	CCNNNNNNNGG	2 cut(s)	232, 501
BsmAI	GTCTC	2 cut(s)	215, 474
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	4 cut(s)	3, 95, 538, 625
BspACI	CCGC	2 cut(s)	42, 226
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	3 cut(s)	175, 406, 593
BspLI	GGNNCC	1 cut(s)	399
BspMI	ACCTGC	2 cut(s)	36, 43
BspQI	GCTCTTC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	4 cut(s)	3, 95, 538, 625
BssNAI	GTATAC	1 cut(s)	422
BssT1I	CCWWGG	1 cut(s)	259
Bst1107I	GTATAC	1 cut(s)	422
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	5 cut(s)	15, 170, 338, 430, 513
BstC8I	GCNNGC	3 cut(s)	226, 230, 234
BstDEI	CTNAG	6 cut(s)	162, 345, 365, 414, 580, 675
BstF5I	GGATG	2 cut(s)	303, 313
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	4 cut(s)	6, 98, 541, 628
BstMAI	GTCTC	2 cut(s)	215, 474
BstMBI	GATC	4 cut(s)	3, 95, 538, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	424, 595
BstSFI	CTRYAG	1 cut(s)	279
BstV2I	GAAGAC	1 cut(s)	66
BstZ17I	GTATAC	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	303, 313
BveI	ACCTGC	2 cut(s)	36, 43
Cac8I	GCNNGC	3 cut(s)	226, 230, 234
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	328
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviJI	RGCY	8 cut(s)	161, 180, 224, 330, 400, 412, 524, 536
CviKI_1	RGCY	8 cut(s)	161, 180, 224, 330, 400, 412, 524, 536
DdeI	CTNAG	6 cut(s)	162, 345, 365, 414, 580, 675
DpnI	GATC	4 cut(s)	5, 97, 540, 627
DpnII	GATC	4 cut(s)	3, 95, 538, 625
Eam1104I	CTCTTC	5 cut(s)	15, 170, 338, 430, 513
EarI	CTCTTC	5 cut(s)	15, 170, 338, 430, 513
Ecl136II	GAGCTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	259
EcoT22I	ATGCAT	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	259
FaiI	YATR	7 cut(s)	150, 171, 407, 422, 549, 632, 650
FalI	AAGNNNNNCTT	4 cut(s)	167, 199, 317, 349
FauI	CCCGC	1 cut(s)	233
FbaI	TGATCA	2 cut(s)	3, 538
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	2 cut(s)	300, 310
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	43
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	330
HhaI	GCGC	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	4 cut(s)	264, 269, 489, 578
HphI	GGTGA	2 cut(s)	484, 646
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	2 cut(s)	11, 583
Hpy188III	TCNNGA	3 cut(s)	253, 378, 471
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4V	TGCA	2 cut(s)	52, 313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	424, 595
HpyF3I	CTNAG	6 cut(s)	162, 345, 365, 414, 580, 675
HspAI	GCGC	1 cut(s)	110
Ksp22I	TGATCA	2 cut(s)	3, 538
Kzo9I	GATC	4 cut(s)	3, 95, 538, 625
LguI	GCTCTTC	1 cut(s)	170
LmnI	GCTCC	2 cut(s)	185, 397
LweI	GCATC	2 cut(s)	322, 627
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	448, 490
MalI	GATC	4 cut(s)	5, 97, 540, 627
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	4 cut(s)	3, 95, 538, 625
MboII	GAAGA	9 cut(s)	32, 71, 77, 187, 195, 314, 325, 447, 530
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	3 cut(s)	237, 292, 369
MlyI	GAGTC	3 cut(s)	273, 498, 572
MnlI	CCTC	9 cut(s)	5, 16, 22, 341, 467, 508, 514, 544, 699
Mph1103I	ATGCAT	1 cut(s)	315
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	315
MwoI	GCNNNNNNNGC	2 cut(s)	424, 595
NdeII	GATC	4 cut(s)	3, 95, 538, 625
NlaIV	GGNNCC	1 cut(s)	399
NmuCI	GTSAC	1 cut(s)	490
NsiI	ATGCAT	1 cut(s)	315
OliI	CACNNNNGTG	1 cut(s)	510
PaeR7I	CTCGAG	1 cut(s)	471
PciSI	GCTCTTC	1 cut(s)	170
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	44
PleI	GAGTC	3 cut(s)	272, 497, 572
PpsI	GAGTC	3 cut(s)	272, 497, 572
Psp124BI	GAGCTC	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	510
SacI	GAGCTC	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	4 cut(s)	3, 95, 538, 625
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	3 cut(s)	273, 498, 572
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	8 cut(s)	16, 27, 33, 50, 57, 134, 182, 261
SfaNI	GCATC	2 cut(s)	322, 627
SfcI	CTRYAG	1 cut(s)	279
Sfr274I	CTCGAG	1 cut(s)	471
SlaI	CTCGAG	1 cut(s)	471
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	4 cut(s)	212, 251, 471, 525
SmoI	CTYRAG	4 cut(s)	212, 251, 471, 525
Sse9I	AATT	3 cut(s)	237, 292, 369
SsiI	CCGC	2 cut(s)	42, 226
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	496
TaqI	TCGA	3 cut(s)	267, 472, 565
TasI	AATT	3 cut(s)	237, 292, 369
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	490
TspGWI	ACGGA	1 cut(s)	522
XapI	RAATTY	1 cut(s)	369
XbaI	TCTAGA	1 cut(s)	377
XhoI	CTCGAG	1 cut(s)	471
XmiI	GTMKAC	1 cut(s)	421
XspI	CTAG	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.