Rmu_sc0000239.1_g000041

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000239.1
Physical Location & Seq
Reverse (-)
275743 .. 277419
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000239.1_g000041.1.cds

Sequence Viewer

Length: 624 bp
atgctcggtgatactgctatcgcagtgcatcctgataacgaaagatataagcatcttcacggtaaacatgcaatccatccatttaatggaaggattcctataataagtgatgaaattcttgttgatccagagtttgggactggtgctgtcaagattaccccggcccatgatcctaatgactttatggttggggagcgccataatcttgagtttatcaacatctttactgatgatggaaaaataaaccaaagtaaagatgttgtggagcctatgataaagccccagcggtacattaaatgcagcgatatgggaaatgaagctctcaatgctgtccctgatgatgaaaataggaagctggagattatcccaagacagtatactgctgaatggaagaggtgctcattttttccttattgtgctggtgataacaacgaagaatttggaaaaaaatttgagcgatgggtggttgcaggaagtgaggaagaggctcaggcattggctgatcaaaaatatgagggaaagaagtttcgattagaacaggactcagatgtgcttgacaggtggttttcgtctggtcttttcccattgtcggtattgggctggccggatgatccagaagattaa

Protein Analysis

207

Amino Acids

23.68

Weight (kDa)

4.85

Isoelectric Point (pI)

30.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 86, 134
AccI GTMKAC 1 cut(s) 377
AciI CCGC 1 cut(s) 286
AclWI GGATC 3 cut(s) 119, 164, 605
AcoI YGGCCR 1 cut(s) 602
AcsI RAATTY 3 cut(s) 114, 437, 449
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 3 cut(s) 86, 134, 589
AluBI AGCT 2 cut(s) 320, 355
AluI AGCT 2 cut(s) 320, 355
Alw21I GWGCWC 1 cut(s) 401
AlwI GGATC 3 cut(s) 119, 164, 605
AoxI GGCC 2 cut(s) 162, 602
ApeKI GCWGC 1 cut(s) 300
ApoI RAATTY 3 cut(s) 114, 437, 449
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 20, 434
Bbv12I GWGCWC 1 cut(s) 401
BbvI GCAGC 1 cut(s) 312
BccI CCATC 3 cut(s) 84, 227, 453
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 1 cut(s) 161
BfoI RGCGCY 1 cut(s) 199
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 2 cut(s) 37, 61
BpmI CTGGAG 1 cut(s) 377
Bpu10I CCTNAGC 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 134, 589
Bse1I ACTGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 3 cut(s) 28, 76, 613
BseLI CCNNNNNNNGG 3 cut(s) 86, 134, 589
BseMII CTCAG 2 cut(s) 503, 558
BseNI ACTGG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 312
BseYI CCCAGC 1 cut(s) 282
BshFI GGCC 2 cut(s) 164, 604
BsiHKAI GWGCWC 1 cut(s) 401
BsiSI CCGG 2 cut(s) 161, 605
BslFI GGGAC 2 cut(s) 151, 317
BslI CCNNNNNNNGG 3 cut(s) 86, 134, 589
BsmFI GGGAC 2 cut(s) 151, 317
BsnI GGCC 2 cut(s) 164, 604
Bsp1286I GDGCHC 1 cut(s) 401
Bsp143I GATC 4 cut(s) 124, 169, 502, 610
BspACI CCGC 1 cut(s) 286
BspANI GGCC 2 cut(s) 164, 604
BspCNI CTCAG 2 cut(s) 502, 557
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 3 cut(s) 119, 164, 605
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 4 cut(s) 124, 169, 502, 610
BssNAI GTATAC 1 cut(s) 378
Bst1107I GTATAC 1 cut(s) 378
Bst4CI ACNGT 2 cut(s) 62, 375
Bst6I CTCTTC 2 cut(s) 386, 477
BstC8I GCNNGC 1 cut(s) 602
BstDEI CTNAG 2 cut(s) 489, 544
BstF5I GGATG 3 cut(s) 28, 76, 613
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 4 cut(s) 127, 172, 505, 613
BstMBI GATC 4 cut(s) 124, 169, 502, 610
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 312
BstZ17I GTATAC 1 cut(s) 378
BsuRI GGCC 2 cut(s) 164, 604
BtgZI GCGATG 1 cut(s) 472
BtsCI GGATG 3 cut(s) 28, 76, 613
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 602
CfoI GCGC 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 289
CviAII CATG 2 cut(s) 68, 167
CviJI RGCY 9 cut(s) 164, 268, 280, 320, 355, 488, 500, 600, 604
CviKI_1 RGCY 9 cut(s) 164, 268, 280, 320, 355, 488, 500, 600, 604
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 489, 544
DpnI GATC 4 cut(s) 126, 171, 504, 612
DpnII GATC 4 cut(s) 124, 169, 502, 610
EaeI YGGCCR 1 cut(s) 602
Eam1104I CTCTTC 2 cut(s) 386, 477
EarI CTCTTC 2 cut(s) 386, 477
FaeI CATG 2 cut(s) 71, 170
FaqI GGGAC 2 cut(s) 151, 317
FatI CATG 2 cut(s) 67, 166
FbaI TGATCA 1 cut(s) 502
FblI GTMKAC 1 cut(s) 377
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 3 cut(s) 15, 63, 620
Fsp4HI GCNGC 1 cut(s) 301
GlaI GCGC 1 cut(s) 197
GluI GCNGC 1 cut(s) 301
GsaI CCCAGC 1 cut(s) 286
GsuI CTGGAG 1 cut(s) 377
HaeII RGCGCY 1 cut(s) 199
HaeIII GGCC 2 cut(s) 164, 604
HapII CCGG 2 cut(s) 161, 605
HhaI GCGC 1 cut(s) 198
Hin1II CATG 2 cut(s) 71, 170
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HinfI GANTC 2 cut(s) 94, 542
HpaII CCGG 2 cut(s) 161, 605
HphI GGTGA 2 cut(s) 20, 434
Hpy166II GTNNAC 2 cut(s) 65, 378
Hpy188I TCNGA 1 cut(s) 547
Hpy188III TCNNGA 5 cut(s) 32, 128, 151, 206, 614
Hpy8I GTNNAC 2 cut(s) 65, 378
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 2 cut(s) 62, 375
HpyCH4V TGCA 4 cut(s) 28, 71, 300, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 2 cut(s) 489, 544
Hsp92II CATG 2 cut(s) 71, 170
HspAI GCGC 1 cut(s) 196
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 4 cut(s) 124, 169, 502, 610
LmnI GCTCC 2 cut(s) 193, 265
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 2 cut(s) 37, 61
MalI GATC 4 cut(s) 126, 171, 504, 612
MboI GATC 4 cut(s) 124, 169, 502, 610
MboII GAAGA 4 cut(s) 47, 403, 446, 494
MhlI GDGCHC 1 cut(s) 401
MluCI AATT 3 cut(s) 114, 437, 449
MlyI GAGTC 1 cut(s) 536
MnlI CCTC 4 cut(s) 387, 472, 478, 508
MseI TTAA 3 cut(s) 84, 294, 622
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 2 cut(s) 161, 605
MspR9I CCNGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 326
NciI CCSGG 1 cut(s) 161
NdeII GATC 4 cut(s) 124, 169, 502, 610
NlaIII CATG 2 cut(s) 71, 170
NlaIV GGNNCC 1 cut(s) 267
NspI RCATGY 1 cut(s) 71
PfeI GAWTC 1 cut(s) 94
PflMI CCANNNNNTGG 2 cut(s) 86, 134
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
PspFI CCCAGC 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 163
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 3 cut(s) 84, 294, 622
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 4 cut(s) 124, 169, 502, 610
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 401
SetI ASST 4 cut(s) 322, 357, 398, 563
SfaNI GCATC 2 cut(s) 37, 61
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 3 cut(s) 114, 437, 449
SsiI CCGC 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 159
TaaI ACNGT 2 cut(s) 62, 375
TaqI TCGA 1 cut(s) 529
TasI AATT 3 cut(s) 114, 437, 449
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 3 cut(s) 84, 294, 622
Tru9I TTAA 3 cut(s) 84, 294, 622
TscAI CASTG 1 cut(s) 30
TseI GCWGC 1 cut(s) 300
TspDTI ATGAA 3 cut(s) 126, 330, 357
TspRI CASTG 1 cut(s) 30
Van91I CCANNNNNTGG 2 cut(s) 86, 134
XapI RAATTY 3 cut(s) 114, 437, 449
XceI RCATGY 1 cut(s) 71
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.