Belongs to the class-I aminoacyl-tRNA synthetase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| tRNA-synt_1 | PF00133 | 109 - 290 | 1.4e-67 | tRNA synthetases class I (I, L, M and V) |
| tRNA-synt_1g | PF09334 | 135 - 197 | 4.1e-07 | tRNA synthetases class I (M) |
| tRNA-synt_1 | PF00133 | 323 - 416 | 8.8e-13 | tRNA synthetases class I (I, L, M and V) |
| Anticodon_1 | PF08264 | 462 - 602 | 1.3e-33 | Anticodon-binding domain of tRNA ligase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1008 |
| AccB1I | GGYRCC | 1 cut(s) | 511 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2209 |
| AccI | GTMKAC | 1 cut(s) | 1876 |
| AccII | CGCG | 1 cut(s) | 606 |
| AccIII | TCCGGA | 1 cut(s) | 2043 |
| AciI | CCGC | 6 cut(s) | 35, 112, 150, 404, 796, 1343 |
| AclWI | GGATC | 4 cut(s) | 236, 1043, 2017, 2035 |
| AcoI | YGGCCR | 3 cut(s) | 138, 259, 288 |
| AcsI | RAATTY | 2 cut(s) | 911, 1111 |
| AcuI | CTGAAG | 2 cut(s) | 642, 2018 |
| AfaI | GTAC | 6 cut(s) | 299, 353, 1305, 1401, 1445, 1490 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 18, 1156, 2173, 2209 |
| AgsI | TTSAA | 8 cut(s) | 128, 911, 1514, 1895, 2036, 2138, 2162, 2192 |
| AjnI | CCWGG | 2 cut(s) | 514, 889 |
| AleI | CACNNNNGTG | 1 cut(s) | 1469 |
| Alw21I | GWGCWC | 1 cut(s) | 377 |
| Alw26I | GTCTC | 4 cut(s) | 1219, 1667, 1809, 2190 |
| AlwI | GGATC | 4 cut(s) | 236, 1043, 2017, 2035 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 368, 1466 |
| Ama87I | CYCGRG | 3 cut(s) | 1120, 2126, 2168 |
| Aor13HI | TCCGGA | 1 cut(s) | 2043 |
| AoxI | GGCC | 6 cut(s) | 7, 138, 259, 288, 436, 1147 |
| ApoI | RAATTY | 2 cut(s) | 911, 1111 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2106, 2138 |
| AspLEI | GCGC | 5 cut(s) | 85, 425, 579, 1009, 1198 |
| AspS9I | GGNCC | 5 cut(s) | 8, 523, 699, 1117, 2122 |
| AsuHPI | GGTGA | 2 cut(s) | 1613, 2104 |
| AsuII | TTCGAA | 1 cut(s) | 173 |
| AvaI | CYCGRG | 3 cut(s) | 1120, 2126, 2168 |
| AvaII | GGWCC | 4 cut(s) | 523, 699, 1117, 2122 |
| BaeGI | GKGCMC | 1 cut(s) | 656 |
| BalI | TGGCCA | 2 cut(s) | 261, 290 |
| BanI | GGYRCC | 1 cut(s) | 511 |
| BanII | GRGCYC | 1 cut(s) | 377 |
| BbsI | GAAGAC | 2 cut(s) | 954, 2064 |
| Bbv12I | GWGCWC | 1 cut(s) | 377 |
| BccI | CCATC | 8 cut(s) | 62, 280, 1163, 1421, 1675, 1726, 1730, 2047 |
| BceAI | ACGGC | 4 cut(s) | 843, 1286, 1330, 1628 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 656, 690, 2205, 2239 |
| BciT130I | CCWGG | 2 cut(s) | 516, 891 |
| BciVI | GTATCC | 3 cut(s) | 887, 1383, 1594 |
| BclI | TGATCA | 1 cut(s) | 1062 |
| BcoDI | GTCTC | 4 cut(s) | 1219, 1667, 1809, 2190 |
| BfaI | CTAG | 3 cut(s) | 800, 1886, 2006 |
| BfmI | CTRYAG | 5 cut(s) | 662, 784, 1134, 1467, 2019 |
| BfoI | RGCGCY | 1 cut(s) | 86 |
| BfuI | GTATCC | 3 cut(s) | 887, 1383, 1594 |
| BglII | AGATCT | 3 cut(s) | 1084, 1787, 2029 |
| Bme1390I | CCNGG | 2 cut(s) | 516, 891 |
| Bme18I | GGWCC | 4 cut(s) | 523, 699, 1117, 2122 |
| BmeT110I | CYCGRG | 3 cut(s) | 1120, 2126, 2168 |
| BmgT120I | GGNCC | 5 cut(s) | 8, 523, 699, 1117, 2122 |
| BmiI | GGNNCC | 6 cut(s) | 10, 513, 701, 888, 1119, 2124 |
| BmrFI | CCNGG | 2 cut(s) | 516, 891 |
| BmsI | GCATC | 9 cut(s) | 355, 558, 994, 997, 1183, 1447, 1565, 1687, 1703 |
| BpiI | GAAGAC | 2 cut(s) | 954, 2064 |
| Bpu14I | TTCGAA | 1 cut(s) | 173 |
| BpuEI | CTTGAG | 2 cut(s) | 902, 1791 |
| BsaI | GGTCTC | 1 cut(s) | 1219 |
| BsaJI | CCNNGG | 2 cut(s) | 1032, 1121 |
| BsaWI | WCCGGW | 3 cut(s) | 253, 1794, 2043 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 18, 1156, 2173, 2209 |
| Bse118I | RCCGGY | 2 cut(s) | 140, 1272 |
| Bse1I | ACTGG | 5 cut(s) | 49, 424, 1384, 1609, 1957 |
| BseAI | TCCGGA | 1 cut(s) | 2043 |
| BseBI | CCWGG | 2 cut(s) | 516, 891 |
| BseDI | CCNNGG | 2 cut(s) | 1032, 1121 |
| BseGI | GGATG | 7 cut(s) | 223, 727, 988, 1336, 1670, 1718, 1961 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 18, 1156, 2173, 2209 |
| BseMII | CTCAG | 3 cut(s) | 360, 557, 1241 |
| BseNI | ACTGG | 5 cut(s) | 49, 424, 1384, 1609, 1957 |
| BseRI | GAGGAG | 2 cut(s) | 83, 108 |
| BseSI | GKGCMC | 1 cut(s) | 656 |
| BseX3I | CGGCCG | 1 cut(s) | 138 |
| BseYI | CCCAGC | 1 cut(s) | 530 |
| Bsh1236I | CGCG | 1 cut(s) | 606 |
| Bsh1285I | CGRYCG | 1 cut(s) | 141 |
| BshFI | GGCC | 6 cut(s) | 9, 140, 261, 290, 438, 1149 |
| BshNI | GGYRCC | 1 cut(s) | 511 |
| BsiEI | CGRYCG | 1 cut(s) | 141 |
| BsiHKAI | GWGCWC | 1 cut(s) | 377 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1120, 2126, 2168 |
| BsiSI | CCGG | 6 cut(s) | 137, 141, 254, 1273, 1795, 2044 |
| BsiWI | CGTACG | 2 cut(s) | 1303, 1443 |
| BslFI | GGGAC | 2 cut(s) | 685, 2108 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 18, 1156, 2173, 2209 |
| BsmAI | GTCTC | 4 cut(s) | 1219, 1667, 1809, 2190 |
| BsmBI | CGTCTC | 1 cut(s) | 1667 |
| BsmFI | GGGAC | 2 cut(s) | 685, 2108 |
| BsmI | GAATGC | 2 cut(s) | 169, 2104 |
| BsnI | GGCC | 6 cut(s) | 9, 140, 261, 290, 438, 1149 |
| Bso31I | GGTCTC | 1 cut(s) | 1219 |
| BsoBI | CYCGRG | 3 cut(s) | 1120, 2126, 2168 |
| Bsp119I | TTCGAA | 1 cut(s) | 173 |
| Bsp1286I | GDGCHC | 2 cut(s) | 377, 656 |
| Bsp13I | TCCGGA | 1 cut(s) | 2043 |
| Bsp68I | TCGCGA | 1 cut(s) | 606 |
| BspACI | CCGC | 6 cut(s) | 35, 112, 150, 404, 796, 1343 |
| BspANI | GGCC | 6 cut(s) | 9, 140, 261, 290, 438, 1149 |
| BspCNI | CTCAG | 3 cut(s) | 361, 556, 1240 |
| BspEI | TCCGGA | 1 cut(s) | 2043 |
| BspFNI | CGCG | 1 cut(s) | 606 |
| BspLI | GGNNCC | 6 cut(s) | 10, 513, 701, 888, 1119, 2124 |
| BspMAI | CTGCAG | 2 cut(s) | 1471, 2023 |
| BspPI | GGATC | 4 cut(s) | 236, 1043, 2017, 2035 |
| BspT104I | TTCGAA | 1 cut(s) | 173 |
| BspT107I | GGYRCC | 1 cut(s) | 511 |
| BspTNI | GGTCTC | 1 cut(s) | 1219 |
| BsrFI | RCCGGY | 2 cut(s) | 140, 1272 |
| BsrI | ACTGG | 5 cut(s) | 49, 424, 1384, 1609, 1957 |
| BssAI | RCCGGY | 2 cut(s) | 140, 1272 |
| BssECI | CCNNGG | 2 cut(s) | 1032, 1121 |
| BssT1I | CCWWGG | 1 cut(s) | 1032 |
| Bst2UI | CCWGG | 2 cut(s) | 516, 891 |
| Bst4CI | ACNGT | 7 cut(s) | 297, 302, 905, 1354, 1803, 1924, 2184 |
| Bst6I | CTCTTC | 6 cut(s) | 126, 173, 185, 207, 722, 2187 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1466, 1475 |
| BstBI | TTCGAA | 1 cut(s) | 173 |
| BstC8I | GCNNGC | 2 cut(s) | 142, 2200 |
| BstDEI | CTNAG | 4 cut(s) | 279, 369, 543, 1227 |
| BstEII | GGTNACC | 1 cut(s) | 1268 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 16, 2171 |
| BstF5I | GGATG | 7 cut(s) | 223, 727, 988, 1336, 1670, 1718, 1961 |
| BstFNI | CGCG | 1 cut(s) | 606 |
| BstH2I | RGCGCY | 1 cut(s) | 86 |
| BstHHI | GCGC | 5 cut(s) | 85, 425, 579, 1009, 1198 |
| BstMAI | GTCTC | 4 cut(s) | 1219, 1667, 1809, 2190 |
| BstMCI | CGRYCG | 1 cut(s) | 141 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 146, 158, 167, 449, 536, 769, 1466, 1475 |
| BstNI | CCWGG | 2 cut(s) | 516, 891 |
| BstPI | GGTNACC | 1 cut(s) | 1268 |
| BstSCI | CCNGG | 2 cut(s) | 514, 889 |
| BstSFI | CTRYAG | 5 cut(s) | 662, 784, 1134, 1467, 2019 |
| BstSLI | GKGCMC | 1 cut(s) | 656 |
| BstUI | CGCG | 1 cut(s) | 606 |
| BstV2I | GAAGAC | 2 cut(s) | 954, 2064 |
| BstX2I | RGATCY | 5 cut(s) | 1084, 1787, 2009, 2029, 2040 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1033 |
| BstYI | RGATCY | 5 cut(s) | 1084, 1787, 2009, 2029, 2040 |
| BstZI | CGGCCG | 1 cut(s) | 138 |
| BsuI | GTATCC | 3 cut(s) | 887, 1383, 1594 |
| BsuRI | GGCC | 6 cut(s) | 9, 140, 261, 290, 438, 1149 |
| BtsCI | GGATG | 7 cut(s) | 223, 727, 988, 1336, 1670, 1718, 1961 |
| BtsI | GCAGTG | 4 cut(s) | 1221, 1283, 1464, 1476 |
| BtsIMutI | CAGTG | 7 cut(s) | 1221, 1283, 1391, 1464, 1476, 1799, 1936 |
| BtuMI | TCGCGA | 1 cut(s) | 606 |
| Cac8I | GCNNGC | 2 cut(s) | 142, 2200 |
| CaiI | CAGNNNCTG | 2 cut(s) | 368, 1466 |
| CfoI | GCGC | 5 cut(s) | 85, 425, 579, 1009, 1198 |
| Cfr10I | RCCGGY | 2 cut(s) | 140, 1272 |
| Cfr13I | GGNCC | 5 cut(s) | 8, 523, 699, 1117, 2122 |
| CseI | GACGC | 1 cut(s) | 1649 |
| Csp6I | GTAC | 6 cut(s) | 298, 352, 1304, 1400, 1444, 1489 |
| CviAII | CATG | 5 cut(s) | 440, 527, 593, 973, 1010 |
| CviQI | GTAC | 6 cut(s) | 298, 352, 1304, 1400, 1444, 1489 |
| DdeI | CTNAG | 4 cut(s) | 279, 369, 543, 1227 |
| EaeI | YGGCCR | 3 cut(s) | 138, 259, 288 |
| EagI | CGGCCG | 1 cut(s) | 138 |
| Eam1104I | CTCTTC | 6 cut(s) | 126, 173, 185, 207, 722, 2187 |
| EarI | CTCTTC | 6 cut(s) | 126, 173, 185, 207, 722, 2187 |
| EciI | GGCGGA | 2 cut(s) | 101, 1332 |
| Ecl136II | GAGCTC | 1 cut(s) | 375 |
| EclXI | CGGCCG | 1 cut(s) | 138 |
| Eco130I | CCWWGG | 1 cut(s) | 1032 |
| Eco24I | GRGCYC | 1 cut(s) | 377 |
| Eco31I | GGTCTC | 1 cut(s) | 1219 |
| Eco32I | GATATC | 2 cut(s) | 1252, 2223 |
| Eco47I | GGWCC | 4 cut(s) | 523, 699, 1117, 2122 |
| Eco52I | CGGCCG | 1 cut(s) | 138 |
| Eco53kI | GAGCTC | 1 cut(s) | 375 |
| Eco57I | CTGAAG | 2 cut(s) | 642, 2018 |
| Eco88I | CYCGRG | 3 cut(s) | 1120, 2126, 2168 |
| Eco91I | GGTNACC | 1 cut(s) | 1268 |
| EcoICRI | GAGCTC | 1 cut(s) | 375 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 16, 2171 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2122 |
| EcoO65I | GGTNACC | 1 cut(s) | 1268 |
| EcoRII | CCWGG | 2 cut(s) | 514, 889 |
| EcoRV | GATATC | 2 cut(s) | 1252, 2223 |
| EcoT14I | CCWWGG | 1 cut(s) | 1032 |
| EcoT38I | GRGCYC | 1 cut(s) | 377 |
| ErhI | CCWWGG | 1 cut(s) | 1032 |
| Esp3I | CGTCTC | 1 cut(s) | 1667 |
| FaeI | CATG | 5 cut(s) | 443, 530, 596, 976, 1013 |
| FaqI | GGGAC | 2 cut(s) | 685, 2108 |
| FatI | CATG | 5 cut(s) | 439, 526, 592, 972, 1009 |
| FauNDI | CATATG | 1 cut(s) | 2208 |
| FbaI | TGATCA | 1 cut(s) | 1062 |
| FblI | GTMKAC | 1 cut(s) | 1876 |
| FokI | GGATG | 7 cut(s) | 230, 734, 975, 1343, 1657, 1705, 1968 |
| FriOI | GRGCYC | 1 cut(s) | 377 |
| FspAI | RTGCGCAY | 1 cut(s) | 1008 |
| FspBI | CTAG | 3 cut(s) | 800, 1886, 2006 |
| FspI | TGCGCA | 1 cut(s) | 1008 |
| GlaI | GCGC | 5 cut(s) | 84, 424, 578, 1008, 1197 |
| GsaI | CCCAGC | 1 cut(s) | 534 |
| HaeII | RGCGCY | 1 cut(s) | 86 |
| HaeIII | GGCC | 6 cut(s) | 9, 140, 261, 290, 438, 1149 |
| HapII | CCGG | 6 cut(s) | 137, 141, 254, 1273, 1795, 2044 |
| HgaI | GACGC | 1 cut(s) | 1649 |
| HhaI | GCGC | 5 cut(s) | 85, 425, 579, 1009, 1198 |
| Hin1II | CATG | 5 cut(s) | 443, 530, 596, 976, 1013 |
| Hin6I | GCGC | 5 cut(s) | 83, 423, 577, 1007, 1196 |
| HinP1I | GCGC | 5 cut(s) | 83, 423, 577, 1007, 1196 |
| HincII | GTYRAC | 1 cut(s) | 1350 |
| HindII | GTYRAC | 1 cut(s) | 1350 |
| HindIII | AAGCTT | 1 cut(s) | 1097 |
| HpaII | CCGG | 6 cut(s) | 137, 141, 254, 1273, 1795, 2044 |
| HphI | GGTGA | 2 cut(s) | 1613, 2104 |
| Hpy166II | GTNNAC | 4 cut(s) | 850, 1350, 1877, 1975 |
| Hpy8I | GTNNAC | 4 cut(s) | 850, 1350, 1877, 1975 |
| Hpy99I | CGWCG | 2 cut(s) | 611, 678 |
| HpyAV | CCTTC | 5 cut(s) | 313, 1139, 1993, 2083, 2167 |
| HpyCH4III | ACNGT | 7 cut(s) | 297, 302, 905, 1354, 1803, 1924, 2184 |
| HpyCH4IV | ACGT | 1 cut(s) | 673 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 146, 158, 167, 449, 536, 769, 1466, 1475 |
| HpyF3I | CTNAG | 4 cut(s) | 279, 369, 543, 1227 |
| HpySE526I | ACGT | 1 cut(s) | 673 |
| Hsp92II | CATG | 5 cut(s) | 443, 530, 596, 976, 1013 |
| HspAI | GCGC | 5 cut(s) | 83, 423, 577, 1007, 1196 |
| Kpn2I | TCCGGA | 1 cut(s) | 2043 |
| KroI | GCCGGC | 1 cut(s) | 140 |
| KroNI | GCCGGC | 1 cut(s) | 142 |
| Ksp22I | TGATCA | 1 cut(s) | 1062 |
| LmnI | GCTCC | 1 cut(s) | 139 |
| LweI | GCATC | 9 cut(s) | 355, 558, 994, 997, 1183, 1447, 1565, 1687, 1703 |
| MaeI | CTAG | 3 cut(s) | 800, 1886, 2006 |
| MaeII | ACGT | 1 cut(s) | 673 |
| MaeIII | GTNAC | 8 cut(s) | 98, 415, 494, 742, 1268, 1639, 1797, 2108 |
| MfeI | CAATTG | 1 cut(s) | 1493 |
| MflI | RGATCY | 5 cut(s) | 1084, 1787, 2009, 2029, 2040 |
| MhlI | GDGCHC | 2 cut(s) | 377, 656 |
| MlsI | TGGCCA | 2 cut(s) | 261, 290 |
| MluNI | TGGCCA | 2 cut(s) | 261, 290 |
| MlyI | GAGTC | 6 cut(s) | 244, 971, 1763, 1769, 1774, 1822 |
| MmeI | TCCRAC | 1 cut(s) | 272 |
| Mox20I | TGGCCA | 2 cut(s) | 261, 290 |
| MroI | TCCGGA | 1 cut(s) | 2043 |
| MroNI | GCCGGC | 1 cut(s) | 140 |
| MscI | TGGCCA | 2 cut(s) | 261, 290 |
| MseI | TTAA | 4 cut(s) | 584, 923, 1404, 2064 |
| MslI | CAYNNNNRTG | 2 cut(s) | 977, 1469 |
| Msp20I | TGGCCA | 2 cut(s) | 261, 290 |
| MspA1I | CMGCKG | 1 cut(s) | 230 |
| MspI | CCGG | 6 cut(s) | 137, 141, 254, 1273, 1795, 2044 |
| MspR9I | CCNGG | 2 cut(s) | 516, 891 |
| MunI | CAATTG | 1 cut(s) | 1493 |
| Mva1269I | GAATGC | 2 cut(s) | 169, 2104 |
| MvaI | CCWGG | 2 cut(s) | 516, 891 |
| MvnI | CGCG | 1 cut(s) | 606 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 146, 158, 167, 449, 536, 769, 1466, 1475 |
| NaeI | GCCGGC | 1 cut(s) | 142 |
| NdeI | CATATG | 1 cut(s) | 2208 |
| NgoMIV | GCCGGC | 1 cut(s) | 140 |
| NlaIII | CATG | 5 cut(s) | 443, 530, 596, 976, 1013 |
| NlaIV | GGNNCC | 6 cut(s) | 10, 513, 701, 888, 1119, 2124 |
| NmuCI | GTSAC | 4 cut(s) | 98, 415, 742, 1797 |
| NruI | TCGCGA | 1 cut(s) | 606 |
| NsbI | TGCGCA | 1 cut(s) | 1008 |
| NspV | TTCGAA | 1 cut(s) | 173 |
| OliI | CACNNNNGTG | 1 cut(s) | 1469 |
| PaeR7I | CTCGAG | 1 cut(s) | 2168 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1822 |
| PctI | GAATGC | 2 cut(s) | 169, 2104 |
| PdiI | GCCGGC | 1 cut(s) | 142 |
| PfeI | GAWTC | 5 cut(s) | 472, 997, 1439, 2134, 2162 |
| Pfl23II | CGTACG | 2 cut(s) | 1303, 1443 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2209 |
| PfoI | TCCNGGA | 1 cut(s) | 889 |
| PleI | GAGTC | 6 cut(s) | 244, 970, 1762, 1769, 1773, 1821 |
| PpsI | GAGTC | 6 cut(s) | 244, 970, 1762, 1769, 1773, 1821 |
| PpuMI | RGGWCCY | 1 cut(s) | 2122 |
| Psp124BI | GAGCTC | 1 cut(s) | 377 |
| Psp5II | RGGWCCY | 1 cut(s) | 2122 |
| Psp6I | CCWGG | 2 cut(s) | 514, 889 |
| PspEI | GGTNACC | 1 cut(s) | 1268 |
| PspFI | CCCAGC | 1 cut(s) | 530 |
| PspGI | CCWGG | 2 cut(s) | 514, 889 |
| PspLI | CGTACG | 2 cut(s) | 1303, 1443 |
| PspN4I | GGNNCC | 6 cut(s) | 10, 513, 701, 888, 1119, 2124 |
| PspPI | GGNCC | 5 cut(s) | 8, 523, 699, 1117, 2122 |
| PspPPI | RGGWCCY | 1 cut(s) | 2122 |
| PstI | CTGCAG | 2 cut(s) | 1471, 2023 |
| PstNI | CAGNNNCTG | 2 cut(s) | 368, 1466 |
| PsuI | RGATCY | 5 cut(s) | 1084, 1787, 2009, 2029, 2040 |
| PvuII | CAGCTG | 1 cut(s) | 230 |
| RruI | TCGCGA | 1 cut(s) | 606 |
| RsaI | GTAC | 6 cut(s) | 299, 353, 1305, 1401, 1445, 1490 |
| RsaNI | GTAC | 6 cut(s) | 298, 352, 1304, 1400, 1444, 1489 |
| RseI | CAYNNNNRTG | 2 cut(s) | 977, 1469 |
| SacI | GAGCTC | 1 cut(s) | 377 |
| SaqAI | TTAA | 4 cut(s) | 584, 923, 1404, 2064 |
| Sau96I | GGNCC | 5 cut(s) | 8, 523, 699, 1117, 2122 |
| SchI | GAGTC | 6 cut(s) | 244, 971, 1763, 1769, 1774, 1822 |
| ScrFI | CCNGG | 2 cut(s) | 516, 891 |
| SduI | GDGCHC | 2 cut(s) | 377, 656 |
| SfaNI | GCATC | 9 cut(s) | 355, 558, 994, 997, 1183, 1447, 1565, 1687, 1703 |
| SfcI | CTRYAG | 5 cut(s) | 662, 784, 1134, 1467, 2019 |
| Sfr274I | CTCGAG | 1 cut(s) | 2168 |
| SfuI | TTCGAA | 1 cut(s) | 173 |
| SinI | GGWCC | 4 cut(s) | 523, 699, 1117, 2122 |
| SlaI | CTCGAG | 1 cut(s) | 2168 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 977, 1469 |
| SmlI | CTYRAG | 3 cut(s) | 881, 1806, 2168 |
| SmoI | CTYRAG | 3 cut(s) | 881, 1806, 2168 |
| SsiI | CCGC | 6 cut(s) | 35, 112, 150, 404, 796, 1343 |
| SspMI | CTAG | 3 cut(s) | 800, 1886, 2006 |
| SstI | GAGCTC | 1 cut(s) | 377 |
| StyD4I | CCNGG | 2 cut(s) | 514, 889 |
| StyI | CCWWGG | 1 cut(s) | 1032 |
| TaaI | ACNGT | 7 cut(s) | 297, 302, 905, 1354, 1803, 1924, 2184 |
| TaiI | ACGT | 1 cut(s) | 676 |
| TaqI | TCGA | 6 cut(s) | 173, 315, 1846, 1861, 2169, 2225 |
| TatI | WGTACW | 1 cut(s) | 297 |
| TauI | GCSGC | 3 cut(s) | 37, 152, 406 |
| TfiI | GAWTC | 5 cut(s) | 472, 997, 1439, 2134, 2162 |
| Tru1I | TTAA | 4 cut(s) | 584, 923, 1404, 2064 |
| Tru9I | TTAA | 4 cut(s) | 584, 923, 1404, 2064 |
| TscAI | CASTG | 7 cut(s) | 1228, 1283, 1391, 1471, 1476, 1806, 1936 |
| TseFI | GTSAC | 4 cut(s) | 98, 415, 742, 1797 |
| Tsp45I | GTSAC | 4 cut(s) | 98, 415, 742, 1797 |
| TspGWI | ACGGA | 3 cut(s) | 86, 375, 761 |
| TspRI | CASTG | 7 cut(s) | 1228, 1283, 1391, 1471, 1476, 1806, 1936 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2209 |
| VpaK11BI | GGWCC | 4 cut(s) | 523, 699, 1117, 2122 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 16, 2171 |
| XapI | RAATTY | 2 cut(s) | 911, 1111 |
| XhoI | CTCGAG | 1 cut(s) | 2168 |
| XmiI | GTMKAC | 1 cut(s) | 1876 |
| XspI | CTAG | 3 cut(s) | 800, 1886, 2006 |