Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

65675968 .. 65684082

Gene Structure 8115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG387000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3147 bp

ATGGACGCTGGAATCGAAGACCCGGAGAAGAAGAAGAAGAAGAAGGAAGAGAAGGCAAGAGAGAAAGAATTGAAAAAGCAAAAAGCGTTAGAGAAAGCTGCCAAGTTCCAGGCACAACAAGCGAATGCTGCTTCGAAGAAGAGTGAGAAGAAGAGTGTGAAGCGTGGGAATGAAGAGGATGAAAATGCAGCTGATTTTGTTGATCCTCCGACTCCGGTTGGCCAGAAGAAGCAGATGTCTAAGCAGATGGCCAAACAGTACAGTCCAAGTGCTGTCGAGAAGGGGTGGTATGAGTGGTGGGAGGAAGTGGGGTACTTTGTGCCAGATGCTGAGAGCTCTAAACCTCCGTTTGTGATTGTTTTGCCGCCTCCCAATGTGACTGGCGCACTTCATATAGGCCATGCCCTTACTGCTGCTATTGAGGACACTATGATTCGTTGGCGAAGAATGTCAGGTTACAATGCCTTGTGGGTGCCTGGAATGGACCATGCTGGGATTGCAACTCAGGTTGTTGTAGAAAAGAAGCTGATGCGTGAGCGCAATTTAACCCGACATGATATTGGTCGCGACGAGTTTGTGTCTGAAGTTTGGAAATGGAAAAATAATTACGGGGGCACTATACTACAGCAGCTACGTCGTCTGGGTGCTTCATTGGATTGGTCCCGTGAGTGCTTTACAATGGATGAGAAGAGGTCAAATGCTGTGACGGAGGCTTTTGTGAGGCTTCATAAGCAAGGGCTTATCTACAGGGATAACCGCCTAGTGAATTGGGATTGTGTCTTGCGAACGGCAATATCTGAAATTGAGGTGGACTATATAGATATAAAAGAAAGAACATCTCTTGAGGTTCCTGGATACAAGAACCGTGTTGAATTTGGCGTTTTAACATCATTTGCATACCCTCTGGAAGACAATTTGGGTGAGATAGTTGTGGCAACCACCAGAGTGGAAACTATGCTCGGTGATACTGCTATTGCTGTACATCCAGATGATGACAGATATAAGCATCTTCATGGAAAGCATGCCATTCATCCATTTAATGGAAGAAGGATTCGTATAATCTGTGATGCAATTCTCGTTGATCCAGAGTTTGGGACTGGTGCTGTGAAGATTACTCCGGCCCATGATCCTAATGACTTTAACGTCGGAAAGCGCCATAATCTGGACTTTATAAACGTCTTCACTGATGATGGAAAAATAAACCAGGATGGTGGAGAGTTTGCAGGGATGCCACGCTTCAAAGCCCGGGAGGCAGTTACTGAAGCATTAAAGAAGAAGGGCCTCTTTAAAGAAGCAACGACAAATGAGATGCGTCTTGGTATATGCTCTAGAACCAAGGATGTTGTTGAACCCATGATAAAGCCCCAGTGGTATGTCAAATGTAGTGGTATGGCCAAGGGAGCCCTTGATGCTGCTGTAGATGATGATAATAGAAAGCTTGACATCATTCCGAGACAGTATAATGCTGATTGGAAGAGATGGCTTGAGAACATTCGTGATTGGTGCGTCTCACGGCAACTTTGGTGGGGTCACCGCATTCCTGCATGGTATGCCGTTTTGGATGGTGAGAAGCCAGAAGATTTTGGATCATTAGATGACCGATGGGTGGTTGCAAGAAATGAGGAAGAGGCTAAAGCACTGGCTAGTCAAAGATACGAGGGAAAGGAGGTTAAACTAGAACAGGATCCTGATGTGCTTGACACGTGGTTTTCTTCTGGTCTCTTCCCATTGTCCGTGTTGGGTTGGCCAGAAGATACAGAAGATTTAAGAGCTTTCTATCCAACTTCAGTTCTTGAAACTGGGCATGACATTCTCTTTTTCTGGGTCGCTCGTATGGTAATGCTTGGAAGTACATTGGGTGGTAATGTACCTTTCACAAAGGTGTATTTGCATCCAATGATTCGTGATGCGCATGGGCGTAAAATGTCCAAGTCCTTGGGGAATGTCATTGATCCTCTTGATGTGATCAATGGTATTTCGCTGGAAGATCTACACAAGAAGCTTTCAGAGGGAAATTTGGACCCGAGGGAAATAGCTATAGCCAAAGAAGGCCAAAAAAAGGATTTTCCTGATGGTATTGCTGAATGTGGTTCTGATGCGCTACATTTTGCTCTGGTCTCATACACTGCTCAGTCTGATAAGATAAATCTGGATATCCAAAGGGTTGTCGGTTACCGGCAGTGGTGTAATAAACTTTGGAACGCCGTACGATTTGCTATGAGCAAACTTGGGGATGATTATGTTCCGCCGTCAACAGTAATCCCTGATGTGCTTCCATTTAGTTGCCAGTGGATACTCTCGGTACTTAATAAAGCCATCTCCAAAACTATTTTTTCATTGGAATCGTACGAGTTTTCAGATGCAGCCACTGCAGTGTATGCTTGGTGGCAGTACCAATTGTGTGATGTGTTCATTGAAGCCATAAAACCCTACTTTGCTGGAAACAATCCAAAGTTTGCATCTGAAAGGGGTTTTGCACAAGACACGCTCTGGTTGTGTCTGGATACTGGACTACGGCTGCTTCACCCATTTATGCCTTTCGTTACCGAAGAACTATGGCAGCGTCTCCCATCATCCAAGCATCACAATAGGGCAGCATCAATTATGATATGCGACTACCCATCCATCGTGGAGTGCTGGACAAATGAAAGGGTGGAGTCTGAAATGAGTCTTATTGACTCTATTGTTAGATCTCTCCGGTCACTGTCTCAAGAGAGTCGTGAAAGACGACCAGCTTTTGTGCTGTGTCGATCAATGTCAGATCGAGAGATAATATGTAGACAACAACTAGAGATTGAAACTCTTGCCAATCTGTCATCTCTGACGGTAATCAGTGAGAATGAAGCTGCCCCAACTGGATGTGCTGTGTCTGTTGTAAACGAAAACCTATCTGTTTATCTGAAGGTTCTAGGATCTCGTTCTGCAGAAATAGATCTTGAAAAGATCCGGAAAAAGATGGAAGACATTAAATTGCAACAGGAGAAGATTACGAAGGTGATGAATGCTGCTGGTTACAAAGAAAAGGTCCCCGAGAAGATTCAAAAGGCTAATGCTGATAAACTTGAATCCCTCGAGAAGGAAAAACTGTCTCTTGAAGAGGCAAGCCAACATATGGAAGCACAGATATCGAGCAATAAACAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

1048

Amino Acids

119.28

Weight (kDa)

6.04

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	96 - 717	8.9e-144	tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g	PF09334	122 - 184	6.5e-07	tRNA synthetases class I (M)
tRNA-synt_1_2	PF13603	338 - 398	5.6e-07	Leucyl-tRNA synthetase, editing domain
Anticodon_1	PF08264	763 - 903	2.1e-33	Anticodon-binding domain of tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1172
AasI	GACNNNNNNGTC	1 cut(s)	1142
Acc16I	TGCGCA	1 cut(s)	1911
AccB1I	GGYRCC	1 cut(s)	472
AccB7I	CCANNNNNTGG	4 cut(s)	1040, 1091, 1162, 3112
AccI	GTMKAC	1 cut(s)	2779
AccII	CGCG	1 cut(s)	567
AccIII	TCCGGA	1 cut(s)	2946
AciI	CCGC	4 cut(s)	365, 757, 1534, 2246
AclWI	GGATC	9 cut(s)	197, 1076, 1121, 1594, 1679, 1692, 1946, 2920, 2938
AcoI	YGGCCR	4 cut(s)	220, 249, 1392, 1745
AcsI	RAATTY	2 cut(s)	872, 2014
AcuI	CTGAAG	4 cut(s)	603, 1281, 1770, 2921
AcvI	CACGTG	1 cut(s)	1704
AfaI	GTAC	9 cut(s)	260, 314, 981, 1852, 1869, 2208, 2304, 2348, 2393
AfiI	CCNNNNNNNGG	7 cut(s)	1040, 1091, 1162, 1606, 2059, 3076, 3112
AflIII	ACRYGT	1 cut(s)	1701
AjnI	CCWGG	4 cut(s)	108, 475, 850, 1203
AleI	CACNNNNGTG	3 cut(s)	944, 1880, 2372
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	7 cut(s)	1447, 1513, 1724, 2122, 2570, 2712, 3093
AlwI	GGATC	9 cut(s)	197, 1076, 1121, 1594, 1679, 1692, 1946, 2920, 2938
AlwNI	CAGNNNCTG	3 cut(s)	329, 1259, 2369
Ama87I	CYCGRG	4 cut(s)	1245, 2023, 3029, 3071
Aor13HI	TCCGGA	1 cut(s)	2946
AoxI	GGCC	8 cut(s)	220, 249, 397, 1119, 1279, 1392, 1745, 2050
ApoI	RAATTY	2 cut(s)	872, 2014
ArsI	GACNNNNNNTTYG	2 cut(s)	3009, 3041
AspLEI	GCGC	5 cut(s)	386, 540, 1155, 1912, 2101
AspS9I	GGNCC	6 cut(s)	484, 660, 1120, 1279, 2020, 3025
AsuC2I	CCSGG	3 cut(s)	23, 1246, 1247
AsuHPI	GGTGA	6 cut(s)	932, 974, 1523, 1577, 2516, 3007
AsuII	TTCGAA	1 cut(s)	134
AvaI	CYCGRG	4 cut(s)	1245, 2023, 3029, 3071
AvaII	GGWCC	4 cut(s)	484, 660, 2020, 3025
BaeGI	GKGCMC	1 cut(s)	617
BalI	TGGCCA	4 cut(s)	222, 251, 1394, 1747
BamHI	GGATCC	1 cut(s)	1684
BanI	GGYRCC	1 cut(s)	472
BanII	GRGCYC	2 cut(s)	338, 1405
BbrPI	CACGTG	1 cut(s)	1704
BbsI	GAAGAC	4 cut(s)	24, 915, 1171, 2967
Bbv12I	GWGCWC	1 cut(s)	338
BceAI	ACGGC	6 cut(s)	804, 1529, 1538, 2189, 2233, 2531
BcgI	CGANNNNNNTGC	4 cut(s)	617, 651, 3108, 3142
BciT130I	CCWGG	4 cut(s)	110, 477, 852, 1205
BciVI	GTATCC	3 cut(s)	848, 2286, 2497
BclI	TGATCA	1 cut(s)	1965
BcnI	CCSGG	3 cut(s)	23, 1246, 1247
BcoDI	GTCTC	7 cut(s)	1447, 1513, 1724, 2122, 2570, 2712, 3093
BfaI	CTAG	6 cut(s)	761, 1329, 1644, 1676, 2789, 2909
BfmI	CTRYAG	6 cut(s)	623, 745, 1416, 2037, 2370, 2922
BfoI	RGCGCY	1 cut(s)	1156
BfuI	GTATCC	3 cut(s)	848, 2286, 2497
BglI	GCCNNNNNGGC	1 cut(s)	1250
BglII	AGATCT	3 cut(s)	1987, 2690, 2932
Bme1390I	CCNGG	7 cut(s)	23, 110, 477, 852, 1205, 1246, 1247
Bme18I	GGWCC	4 cut(s)	484, 660, 2020, 3025
BmeT110I	CYCGRG	4 cut(s)	1245, 2023, 3029, 3071
BmgT120I	GGNCC	6 cut(s)	484, 660, 1120, 1279, 2020, 3025
BmiI	GGNNCC	7 cut(s)	474, 662, 849, 1402, 1686, 2022, 3027
BmrFI	CCNGG	7 cut(s)	23, 110, 477, 852, 1205, 1246, 1247
BmrI	ACTGGG	2 cut(s)	1360, 1809
BmuI	ACTGGG	2 cut(s)	1360, 1809
BpiI	GAAGAC	4 cut(s)	24, 915, 1171, 2967
Bpu14I	TTCGAA	1 cut(s)	134
BpuEI	CTTGAG	3 cut(s)	863, 1505, 2694
BpuMI	CCSGG	3 cut(s)	23, 1246, 1247
BsaAI	YACGTR	1 cut(s)	1704
BsaI	GGTCTC	2 cut(s)	1724, 2122
BsaJI	CCNNGG	5 cut(s)	1245, 1335, 1395, 1935, 2024
BsaWI	WCCGGW	3 cut(s)	214, 2697, 2946
Bsc4I	CCNNNNNNNGG	7 cut(s)	1040, 1091, 1162, 1606, 2059, 3076, 3112
Bse118I	RCCGGY	1 cut(s)	2175
Bse1I	ACTGG	8 cut(s)	385, 1102, 1366, 1644, 1804, 2287, 2512, 2860
BseAI	TCCGGA	1 cut(s)	2946
BseBI	CCWGG	4 cut(s)	110, 477, 852, 1205
BseDI	CCNNGG	5 cut(s)	1245, 1335, 1395, 1935, 2024
BseLI	CCNNNNNNNGG	7 cut(s)	1040, 1091, 1162, 1606, 2059, 3076, 3112
BseMII	CTCAG	3 cut(s)	321, 518, 2144
BseNI	ACTGG	8 cut(s)	385, 1102, 1366, 1644, 1804, 2287, 2512, 2860
BseSI	GKGCMC	1 cut(s)	617
BseYI	CCCAGC	1 cut(s)	491
Bsh1236I	CGCG	1 cut(s)	567
BshFI	GGCC	8 cut(s)	222, 251, 399, 1121, 1281, 1394, 1747, 2052
BshNI	GGYRCC	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	338
BsiHKCI	CYCGRG	4 cut(s)	1245, 2023, 3029, 3071
BsiSI	CCGG	7 cut(s)	23, 215, 1118, 1246, 2176, 2698, 2947
BsiWI	CGTACG	2 cut(s)	2206, 2346
BslFI	GGGAC	3 cut(s)	646, 1108, 3011
BslI	CCNNNNNNNGG	7 cut(s)	1040, 1091, 1162, 1606, 2059, 3076, 3112
BsmAI	GTCTC	7 cut(s)	1447, 1513, 1724, 2122, 2570, 2712, 3093
BsmBI	CGTCTC	2 cut(s)	1513, 2570
BsmFI	GGGAC	3 cut(s)	646, 1108, 3011
BsmI	GAATGC	3 cut(s)	130, 1536, 3007
BsnI	GGCC	8 cut(s)	222, 251, 399, 1121, 1281, 1394, 1747, 2052
Bso31I	GGTCTC	2 cut(s)	1724, 2122
BsoBI	CYCGRG	4 cut(s)	1245, 2023, 3029, 3071
Bsp119I	TTCGAA	1 cut(s)	134
Bsp1286I	GDGCHC	3 cut(s)	338, 617, 1405
Bsp13I	TCCGGA	1 cut(s)	2946
Bsp1407I	TGTACA	1 cut(s)	979
Bsp68I	TCGCGA	1 cut(s)	567
BspACI	CCGC	4 cut(s)	365, 757, 1534, 2246
BspANI	GGCC	8 cut(s)	222, 251, 399, 1121, 1281, 1394, 1747, 2052
BspCNI	CTCAG	3 cut(s)	322, 517, 2143
BspEI	TCCGGA	1 cut(s)	2946
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	7 cut(s)	474, 662, 849, 1402, 1686, 2022, 3027
BspMAI	CTGCAG	2 cut(s)	2374, 2926
BspPI	GGATC	9 cut(s)	197, 1076, 1121, 1594, 1679, 1692, 1946, 2920, 2938
BspT104I	TTCGAA	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	472
BspTNI	GGTCTC	2 cut(s)	1724, 2122
BsrFI	RCCGGY	1 cut(s)	2175
BsrGI	TGTACA	1 cut(s)	979
BsrI	ACTGG	8 cut(s)	385, 1102, 1366, 1644, 1804, 2287, 2512, 2860
BssAI	RCCGGY	1 cut(s)	2175
BssECI	CCNNGG	5 cut(s)	1245, 1335, 1395, 1935, 2024
BssT1I	CCWWGG	3 cut(s)	1335, 1395, 1935
Bst2UI	CCWGG	4 cut(s)	110, 477, 852, 1205
Bst4CI	ACNGT	8 cut(s)	258, 263, 866, 1458, 2257, 2706, 2827, 3087
Bst6I	CTCTTC	9 cut(s)	42, 134, 146, 168, 683, 1469, 1620, 1727, 3090
BstAPI	GCANNNNNTGC	3 cut(s)	1550, 2369, 2378
BstAUI	TGTACA	1 cut(s)	979
BstBAI	YACGTR	1 cut(s)	1704
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	1023, 3103
BstDEI	CTNAG	4 cut(s)	240, 330, 504, 2130
BstEII	GGTNACC	2 cut(s)	1529, 2171
BstENI	CCTNNNNNAGG	1 cut(s)	3074
BstFNI	CGCG	1 cut(s)	567
BstH2I	RGCGCY	1 cut(s)	1156
BstHHI	GCGC	5 cut(s)	386, 540, 1155, 1912, 2101
BstMAI	GTCTC	7 cut(s)	1447, 1513, 1724, 2122, 2570, 2712, 3093
BstNI	CCWGG	4 cut(s)	110, 477, 852, 1205
BstNSI	RCATGY	1 cut(s)	1025
BstPI	GGTNACC	2 cut(s)	1529, 2171
BstSCI	CCNGG	7 cut(s)	21, 108, 475, 850, 1203, 1244, 1245
BstSFI	CTRYAG	6 cut(s)	623, 745, 1416, 2037, 2370, 2922
BstSLI	GKGCMC	1 cut(s)	617
BstUI	CGCG	1 cut(s)	567
BstV2I	GAAGAC	4 cut(s)	24, 915, 1171, 2967
BstX2I	RGATCY	6 cut(s)	1684, 1987, 2690, 2912, 2932, 2943
BstXI	CCANNNNNNTGG	3 cut(s)	946, 1211, 1936
BstYI	RGATCY	6 cut(s)	1684, 1987, 2690, 2912, 2932, 2943
BsuI	GTATCC	3 cut(s)	848, 2286, 2497
BsuRI	GGCC	8 cut(s)	222, 251, 399, 1121, 1281, 1394, 1747, 2052
BtsI	GCAGTG	4 cut(s)	2124, 2186, 2367, 2379
BtuMI	TCGCGA	1 cut(s)	567
Cac8I	GCNNGC	2 cut(s)	1023, 3103
CaiI	CAGNNNCTG	3 cut(s)	329, 1259, 2369
CfoI	GCGC	5 cut(s)	386, 540, 1155, 1912, 2101
Cfr10I	RCCGGY	1 cut(s)	2175
Cfr13I	GGNCC	6 cut(s)	484, 660, 1120, 1279, 2020, 3025
Cfr9I	CCCGGG	1 cut(s)	1245
CseI	GACGC	4 cut(s)	14, 1301, 1495, 2552
Csp6I	GTAC	9 cut(s)	259, 313, 980, 1851, 1868, 2207, 2303, 2347, 2392
CspCI	CAANNNNNGTGG	4 cut(s)	1366, 1401, 1505, 1540
CviQI	GTAC	9 cut(s)	259, 313, 980, 1851, 1868, 2207, 2303, 2347, 2392
DdeI	CTNAG	4 cut(s)	240, 330, 504, 2130
DraI	TTTAAA	1 cut(s)	1288
DrdI	GACNNNNNNGTC	1 cut(s)	1142
DseDI	GACNNNNNNGTC	1 cut(s)	1142
EaeI	YGGCCR	4 cut(s)	220, 249, 1392, 1745
Eam1104I	CTCTTC	9 cut(s)	42, 134, 146, 168, 683, 1469, 1620, 1727, 3090
EarI	CTCTTC	9 cut(s)	42, 134, 146, 168, 683, 1469, 1620, 1727, 3090
EciI	GGCGGA	1 cut(s)	2235
Ecl136II	GAGCTC	1 cut(s)	336
Eco130I	CCWWGG	3 cut(s)	1335, 1395, 1935
Eco24I	GRGCYC	2 cut(s)	338, 1405
Eco31I	GGTCTC	2 cut(s)	1724, 2122
Eco32I	GATATC	2 cut(s)	2155, 3126
Eco47I	GGWCC	4 cut(s)	484, 660, 2020, 3025
Eco53kI	GAGCTC	1 cut(s)	336
Eco57I	CTGAAG	4 cut(s)	603, 1281, 1770, 2921
Eco72I	CACGTG	1 cut(s)	1704
Eco88I	CYCGRG	4 cut(s)	1245, 2023, 3029, 3071
Eco91I	GGTNACC	2 cut(s)	1529, 2171
EcoICRI	GAGCTC	1 cut(s)	336
EcoNI	CCTNNNNNAGG	1 cut(s)	3074
EcoO109I	RGGNCCY	2 cut(s)	1279, 3025
EcoO65I	GGTNACC	2 cut(s)	1529, 2171
EcoRII	CCWGG	4 cut(s)	108, 475, 850, 1203
EcoRV	GATATC	2 cut(s)	2155, 3126
EcoT14I	CCWWGG	3 cut(s)	1335, 1395, 1935
EcoT38I	GRGCYC	2 cut(s)	338, 1405
ErhI	CCWWGG	3 cut(s)	1335, 1395, 1935
Esp3I	CGTCTC	2 cut(s)	1513, 2570
FalI	AAGNNNNNCTT	2 cut(s)	1268, 1300
FaqI	GGGAC	3 cut(s)	646, 1108, 3011
FauNDI	CATATG	1 cut(s)	3111
FbaI	TGATCA	1 cut(s)	1965
FblI	GTMKAC	1 cut(s)	2779
FriOI	GRGCYC	2 cut(s)	338, 1405
FspAI	RTGCGCAY	1 cut(s)	1911
FspBI	CTAG	6 cut(s)	761, 1329, 1644, 1676, 2789, 2909
FspI	TGCGCA	1 cut(s)	1911
GlaI	GCGC	5 cut(s)	385, 539, 1154, 1911, 2100
GsaI	CCCAGC	1 cut(s)	495
HaeII	RGCGCY	1 cut(s)	1156
HaeIII	GGCC	8 cut(s)	222, 251, 399, 1121, 1281, 1394, 1747, 2052
HapII	CCGG	7 cut(s)	23, 215, 1118, 1246, 2176, 2698, 2947
HgaI	GACGC	4 cut(s)	14, 1301, 1495, 2552
HhaI	GCGC	5 cut(s)	386, 540, 1155, 1912, 2101
Hin6I	GCGC	5 cut(s)	384, 538, 1153, 1910, 2099
HinP1I	GCGC	5 cut(s)	384, 538, 1153, 1910, 2099
HincII	GTYRAC	1 cut(s)	2253
HindII	GTYRAC	1 cut(s)	2253
HindIII	AAGCTT	2 cut(s)	1436, 2000
HpaII	CCGG	7 cut(s)	23, 215, 1118, 1246, 2176, 2698, 2947
HphI	GGTGA	6 cut(s)	932, 974, 1523, 1577, 2516, 3007
Hpy166II	GTNNAC	4 cut(s)	811, 2253, 2780, 2878
Hpy8I	GTNNAC	4 cut(s)	811, 2253, 2780, 2878
Hpy99I	CGWCG	3 cut(s)	572, 639, 1148
HpyAV	CCTTC	9 cut(s)	37, 46, 274, 1041, 1270, 2042, 2896, 2986, 3070
HpyCH4III	ACNGT	8 cut(s)	258, 263, 866, 1458, 2257, 2706, 2827, 3087
HpyCH4IV	ACGT	4 cut(s)	634, 1143, 1176, 1703
HpyF3I	CTNAG	4 cut(s)	240, 330, 504, 2130
HpySE526I	ACGT	4 cut(s)	634, 1143, 1176, 1703
HspAI	GCGC	5 cut(s)	384, 538, 1153, 1910, 2099
Kpn2I	TCCGGA	1 cut(s)	2946
Ksp22I	TGATCA	1 cut(s)	1965
LmnI	GCTCC	1 cut(s)	1400
MaeI	CTAG	6 cut(s)	761, 1329, 1644, 1676, 2789, 2909
MaeII	ACGT	4 cut(s)	634, 1143, 1176, 1703
MaeIII	GTNAC	9 cut(s)	376, 455, 703, 1255, 1529, 2171, 2542, 2700, 3011
MfeI	CAATTG	1 cut(s)	2396
MflI	RGATCY	6 cut(s)	1684, 1987, 2690, 2912, 2932, 2943
MhlI	GDGCHC	3 cut(s)	338, 617, 1405
MlsI	TGGCCA	4 cut(s)	222, 251, 1394, 1747
MluNI	TGGCCA	4 cut(s)	222, 251, 1394, 1747
MlyI	GAGTC	5 cut(s)	205, 2666, 2672, 2677, 2725
MmeI	TCCRAC	3 cut(s)	233, 1126, 1805
Mox20I	TGGCCA	4 cut(s)	222, 251, 1394, 1747
MroI	TCCGGA	1 cut(s)	2946
MscI	TGGCCA	4 cut(s)	222, 251, 1394, 1747
MslI	CAYNNNNRTG	5 cut(s)	944, 987, 1011, 1880, 2372
Msp20I	TGGCCA	4 cut(s)	222, 251, 1394, 1747
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	7 cut(s)	23, 215, 1118, 1246, 2176, 2698, 2947
MspR9I	CCNGG	7 cut(s)	23, 110, 477, 852, 1205, 1246, 1247
MunI	CAATTG	1 cut(s)	2396
Mva1269I	GAATGC	3 cut(s)	130, 1536, 3007
MvaI	CCWGG	4 cut(s)	110, 477, 852, 1205
MvnI	CGCG	1 cut(s)	567
NciI	CCSGG	3 cut(s)	23, 1246, 1247
NdeI	CATATG	1 cut(s)	3111
NlaIV	GGNNCC	7 cut(s)	474, 662, 849, 1402, 1686, 2022, 3027
NmuCI	GTSAC	4 cut(s)	376, 703, 1529, 2700
NruI	TCGCGA	1 cut(s)	567
NsbI	TGCGCA	1 cut(s)	1911
NspI	RCATGY	1 cut(s)	1025
NspV	TTCGAA	1 cut(s)	134
OliI	CACNNNNGTG	3 cut(s)	944, 1880, 2372
PaeI	GCATGC	1 cut(s)	1025
PaeR7I	CTCGAG	1 cut(s)	3071
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 2725
PctI	GAATGC	3 cut(s)	130, 1536, 3007
PfeI	GAWTC	7 cut(s)	12, 433, 1051, 1900, 2342, 3037, 3065
Pfl23II	CGTACG	2 cut(s)	2206, 2346
PflMI	CCANNNNNTGG	4 cut(s)	1040, 1091, 1162, 3112
PfoI	TCCNGGA	1 cut(s)	850
PleI	GAGTC	5 cut(s)	205, 2665, 2672, 2676, 2724
PmaCI	CACGTG	1 cut(s)	1704
PmlI	CACGTG	1 cut(s)	1704
PpsI	GAGTC	5 cut(s)	205, 2665, 2672, 2676, 2724
Ppu21I	YACGTR	1 cut(s)	1704
PpuMI	RGGWCCY	1 cut(s)	3025
PsiI	TTATAA	1 cut(s)	1172
Psp124BI	GAGCTC	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	3025
Psp6I	CCWGG	4 cut(s)	108, 475, 850, 1203
PspCI	CACGTG	1 cut(s)	1704
PspEI	GGTNACC	2 cut(s)	1529, 2171
PspFI	CCCAGC	1 cut(s)	491
PspGI	CCWGG	4 cut(s)	108, 475, 850, 1203
PspLI	CGTACG	2 cut(s)	2206, 2346
PspN4I	GGNNCC	7 cut(s)	474, 662, 849, 1402, 1686, 2022, 3027
PspPI	GGNCC	6 cut(s)	484, 660, 1120, 1279, 2020, 3025
PspPPI	RGGWCCY	1 cut(s)	3025
PstI	CTGCAG	2 cut(s)	2374, 2926
PstNI	CAGNNNCTG	3 cut(s)	329, 1259, 2369
PsuI	RGATCY	6 cut(s)	1684, 1987, 2690, 2912, 2932, 2943
PvuII	CAGCTG	1 cut(s)	191
RruI	TCGCGA	1 cut(s)	567
RsaI	GTAC	9 cut(s)	260, 314, 981, 1852, 1869, 2208, 2304, 2348, 2393
RsaNI	GTAC	9 cut(s)	259, 313, 980, 1851, 1868, 2207, 2303, 2347, 2392
RseI	CAYNNNNRTG	5 cut(s)	944, 987, 1011, 1880, 2372
SacI	GAGCTC	1 cut(s)	338
Sau96I	GGNCC	6 cut(s)	484, 660, 1120, 1279, 2020, 3025
SchI	GAGTC	5 cut(s)	205, 2666, 2672, 2677, 2725
ScrFI	CCNGG	7 cut(s)	23, 110, 477, 852, 1205, 1246, 1247
SduI	GDGCHC	3 cut(s)	338, 617, 1405
SfcI	CTRYAG	6 cut(s)	623, 745, 1416, 2037, 2370, 2922
Sfr274I	CTCGAG	1 cut(s)	3071
SfuI	TTCGAA	1 cut(s)	134
SinI	GGWCC	4 cut(s)	484, 660, 2020, 3025
SlaI	CTCGAG	1 cut(s)	3071
SmaI	CCCGGG	1 cut(s)	1247
SmiMI	CAYNNNNRTG	5 cut(s)	944, 987, 1011, 1880, 2372
SmlI	CTYRAG	4 cut(s)	842, 1484, 2709, 3071
SmoI	CTYRAG	4 cut(s)	842, 1484, 2709, 3071
SphI	GCATGC	1 cut(s)	1025
SsiI	CCGC	4 cut(s)	365, 757, 1534, 2246
SspMI	CTAG	6 cut(s)	761, 1329, 1644, 1676, 2789, 2909
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	7 cut(s)	21, 108, 475, 850, 1203, 1244, 1245
StyI	CCWWGG	3 cut(s)	1335, 1395, 1935
TaaI	ACNGT	8 cut(s)	258, 263, 866, 1458, 2257, 2706, 2827, 3087
TaiI	ACGT	4 cut(s)	637, 1146, 1179, 1706
TaqI	TCGA	7 cut(s)	15, 134, 276, 2749, 2764, 3072, 3128
TaqII	GACCGA	1 cut(s)	1614
TatI	WGTACW	3 cut(s)	258, 979, 1850
TauI	GCSGC	1 cut(s)	367
TfiI	GAWTC	7 cut(s)	12, 433, 1051, 1900, 2342, 3037, 3065
TseFI	GTSAC	4 cut(s)	376, 703, 1529, 2700
Tsp45I	GTSAC	4 cut(s)	376, 703, 1529, 2700
TspGWI	ACGGA	3 cut(s)	336, 722, 1723
TspMI	CCCGGG	1 cut(s)	1245
Van91I	CCANNNNNTGG	4 cut(s)	1040, 1091, 1162, 3112
VpaK11BI	GGWCC	4 cut(s)	484, 660, 2020, 3025
XagI	CCTNNNNNAGG	1 cut(s)	3074
XapI	RAATTY	2 cut(s)	872, 2014
XbaI	TCTAGA	1 cut(s)	1328
XceI	RCATGY	1 cut(s)	1025
XhoI	CTCGAG	1 cut(s)	3071
XmaI	CCCGGG	1 cut(s)	1245
XmiI	GTMKAC	1 cut(s)	2779
XspI	CTAG	6 cut(s)	761, 1329, 1644, 1676, 2789, 2909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.