Rmu_sc0037577.1_g000001

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037577.1
Physical Location & Seq
Reverse (-)
1540 .. 1884
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037577.1_g000001.1.cds

Sequence Viewer

Length: 345 bp
atgcccttcatcacagaagaattgtggcagcgtcttcatcttgcatcatcattagtagcaccatcatcgattatgatatgtgactatccatgcatgatagagtgctggaagaatgaagaagtggagactcagatggataatgttattatttcggttgtgaattctatacgctcacttgcaaaagaaggtcgtgaacgacgagcagcatttgtgcttagtgggataagagaagagagggagttgatgtacagccagtgtgcaatcattgaaaagttagcgaatgtgtcaccgttggcgataatccatgaagagggtgctgctccaactggatgtgcacttgtctaa

Protein Analysis

114

Amino Acids

12.77

Weight (kDa)

4.87

Isoelectric Point (pI)

71.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 160
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 310
AgsI TTSAA 1 cut(s) 269
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 1 cut(s) 119
Alw44I GTGCAC 1 cut(s) 333
ApaLI GTGCAC 1 cut(s) 333
ApeKI GCWGC 3 cut(s) 28, 203, 317
ApoI RAATTY 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 3 cut(s) 40, 215, 304
BccI CCATC 2 cut(s) 70, 127
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BcoDI GTCTC 1 cut(s) 119
BisI GCNGC 3 cut(s) 29, 204, 318
BlsI GCNGC 3 cut(s) 30, 205, 319
BmsI GCATC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 68
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 2 cut(s) 253, 331
BseCI ATCGAT 1 cut(s) 68
BseGI GGATG 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 253, 331
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 3 cut(s) 40, 215, 304
BshVI ATCGAT 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 337
Bsp1407I TGTACA 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 142
BspDI ATCGAT 1 cut(s) 68
BsrGI TGTACA 1 cut(s) 246
BsrI ACTGG 2 cut(s) 253, 331
Bst4CI ACNGT 1 cut(s) 291
Bst6I CTCTTC 2 cut(s) 225, 303
BstAUI TGTACA 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 129, 215
BstF5I GGATG 1 cut(s) 335
BstMAI GTCTC 1 cut(s) 119
BstSLI GKGCMC 1 cut(s) 337
BstV1I GCAGC 3 cut(s) 40, 215, 304
BstV2I GAAGAC 1 cut(s) 26
Bsu15I ATCGAT 1 cut(s) 68
BsuTUI ATCGAT 1 cut(s) 68
BtsCI GGATG 1 cut(s) 335
BtsIMutI CAGTG 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 68
CseI GACGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 247
CviAII CATG 3 cut(s) 90, 94, 305
CviJI RGCY 1 cut(s) 252
CviKI_1 RGCY 1 cut(s) 252
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 129, 215
Eam1104I CTCTTC 2 cut(s) 225, 303
EarI CTCTTC 2 cut(s) 225, 303
EcoRI GAATTC 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 95
FaeI CATG 3 cut(s) 93, 97, 308
FaiI YATR 6 cut(s) 74, 79, 91, 95, 167, 306
FatI CATG 3 cut(s) 89, 93, 304
Fnu4HI GCNGC 3 cut(s) 29, 204, 318
Fsp4HI GCNGC 3 cut(s) 29, 204, 318
GluI GCNGC 3 cut(s) 29, 204, 318
HgaI GACGC 1 cut(s) 20
Hin1II CATG 3 cut(s) 93, 97, 308
HinfI GANTC 1 cut(s) 127
HphI GGTGA 1 cut(s) 279
Hpy166II GTNNAC 2 cut(s) 194, 335
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 2 cut(s) 194, 335
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 16, 179
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4V TGCA 5 cut(s) 44, 93, 179, 260, 335
HpyF3I CTNAG 2 cut(s) 129, 215
Hsp92II CATG 3 cut(s) 93, 97, 308
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 3 cut(s) 91, 266, 312
Lsp1109I GCAGC 3 cut(s) 40, 215, 304
LweI GCATC 1 cut(s) 53
MaeIII GTNAC 2 cut(s) 80, 285
MboII GAAGA 6 cut(s) 26, 29, 121, 128, 242, 320
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 2 cut(s) 20, 160
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 2 cut(s) 228, 304
Mph1103I ATGCAT 1 cut(s) 95
NlaIII CATG 3 cut(s) 93, 97, 308
NmuCI GTSAC 2 cut(s) 80, 285
NsiI ATGCAT 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PkrI GCNGC 3 cut(s) 30, 205, 319
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SatI GCNGC 3 cut(s) 29, 204, 318
SchI GAGTC 1 cut(s) 121
SduI GDGCHC 1 cut(s) 337
SetI ASST 1 cut(s) 190
SfaNI GCATC 1 cut(s) 53
Sse9I AATT 2 cut(s) 20, 160
TaaI ACNGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 68
TasI AATT 2 cut(s) 20, 160
TatI WGTACW 1 cut(s) 246
TscAI CASTG 1 cut(s) 260
TseFI GTSAC 2 cut(s) 80, 285
TseI GCWGC 3 cut(s) 28, 203, 317
Tsp45I GTSAC 2 cut(s) 80, 285
TspDTI ATGAA 3 cut(s) 26, 129, 321
TspRI CASTG 1 cut(s) 260
VneI GTGCAC 1 cut(s) 333
XapI RAATTY 1 cut(s) 160
Zsp2I ATGCAT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.