MD15G1255900.v1.1

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
21697314 .. 21699119
1806 bp
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UTR
Exon/CDS
Intron
MD15G1255900.v1.1.491

Sequence Viewer

Length: 480 bp
ATGGTCAATTGGGATTGTGGGTTGCTTATAGCAATATCTGACATTGAGGTGGATTATATTGATATTCGAGATACGACATTACTCAGGGTTTCTGGATATGAGAACCCTGTTGAATTTGGCGTGTTAACTTCATTTGCTTACACTCTGGAGGAAGATTTTGGTGAGATTGTGGTGGCCACTACTAGAGTGGAAACTATGCTTGGTGATACTGCCATTGCTATACATCCTAATGACGAAAGGTATAGACACCTTCATGGAAAACATGTCATCCATCCTTTCAATGGAAGAAGAATTCCTATAGTATGTGATGAAATTCTCATTGATCTAGAGTTCGGGACTAGTACTGTGAAGGTTGTTCATTTCAAAGGATCAAGGAAACGCCTGATGCTCGAGTCTTGGAGCTTCTACAGTTCCGTTTCCAACATTCCAGATATGTTGTGCCTGATATTAAAGAATGGGAGAACAAAGTACGATTTTTGA

Protein Analysis

160

Amino Acids

18.2

Weight (kDa)

5.29

Isoelectric Point (pI)

27.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 376
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 3 cut(s) 113, 291, 312
AfaI GTAC 2 cut(s) 343, 470
AfiI CCNNNNNNNGG 1 cut(s) 281
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 3 cut(s) 113, 280, 364
AhlI ACTAGT 1 cut(s) 338
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 1 cut(s) 402
AluI AGCT 1 cut(s) 402
AlwI GGATC 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 389
AoxI GGCC 1 cut(s) 174
ApoI RAATTY 3 cut(s) 113, 291, 312
AsuHPI GGTGA 2 cut(s) 173, 215
AvaI CYCGRG 1 cut(s) 389
BalI TGGCCA 1 cut(s) 176
BccI CCATC 1 cut(s) 279
BcuI ACTAGT 1 cut(s) 338
BfaI CTAG 3 cut(s) 183, 326, 339
BfmI CTRYAG 2 cut(s) 297, 406
BmcAI AGTACT 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 389
BmsI GCATC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 213
BseGI GGATG 3 cut(s) 223, 267, 271
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 97
BshFI GGCC 1 cut(s) 176
BsiHKCI CYCGRG 1 cut(s) 389
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 389
Bsp143I GATC 2 cut(s) 322, 368
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 96
BspPI GGATC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 213
BssMI GATC 2 cut(s) 322, 368
Bst4CI ACNGT 2 cut(s) 346, 410
BstDEI CTNAG 1 cut(s) 83
BstF5I GGATG 3 cut(s) 223, 267, 271
BstKTI GATC 2 cut(s) 325, 371
BstMBI GATC 2 cut(s) 322, 368
BstNSI RCATGY 1 cut(s) 266
BstSFI CTRYAG 2 cut(s) 297, 406
BsuRI GGCC 1 cut(s) 176
BtsCI GGATG 3 cut(s) 223, 267, 271
Csp6I GTAC 2 cut(s) 342, 469
CviAII CATG 2 cut(s) 254, 263
CviJI RGCY 2 cut(s) 176, 402
CviKI_1 RGCY 2 cut(s) 176, 402
CviQI GTAC 2 cut(s) 342, 469
DdeI CTNAG 1 cut(s) 83
DpnI GATC 2 cut(s) 324, 370
DpnII GATC 2 cut(s) 322, 368
EaeI YGGCCR 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 389
EcoRI GAATTC 1 cut(s) 291
FaeI CATG 2 cut(s) 257, 266
FaqI GGGAC 1 cut(s) 349
FatI CATG 2 cut(s) 253, 262
FokI GGATG 3 cut(s) 210, 254, 258
FspBI CTAG 3 cut(s) 183, 326, 339
GsuI CTGGAG 1 cut(s) 167
HaeIII GGCC 1 cut(s) 176
Hin1II CATG 2 cut(s) 257, 266
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 1 cut(s) 392
HpaI GTTAAC 1 cut(s) 126
HphI GGTGA 2 cut(s) 173, 215
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 6 cut(s) 68, 93, 146, 326, 334, 428
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 2 cut(s) 260, 343
HpyCH4III ACNGT 2 cut(s) 346, 410
HpyF3I CTNAG 1 cut(s) 83
Hsp92II CATG 2 cut(s) 257, 266
KspAI GTTAAC 1 cut(s) 126
Kzo9I GATC 2 cut(s) 322, 368
LmnI GCTCC 1 cut(s) 399
LpnPI CCDG 7 cut(s) 70, 78, 120, 131, 395, 441, 455
LweI GCATC 1 cut(s) 375
MaeI CTAG 3 cut(s) 183, 326, 339
MalI GATC 2 cut(s) 324, 370
MboI GATC 2 cut(s) 322, 368
MboII GAAGA 3 cut(s) 164, 297, 300
MfeI CAATTG 1 cut(s) 7
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 4 cut(s) 7, 113, 291, 312
MluNI TGGCCA 1 cut(s) 176
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 2 cut(s) 40, 142
Mox20I TGGCCA 1 cut(s) 176
MscI TGGCCA 1 cut(s) 176
MseI TTAA 2 cut(s) 125, 449
MslI CAYNNNNRTG 3 cut(s) 47, 228, 252
Msp20I TGGCCA 1 cut(s) 176
MunI CAATTG 1 cut(s) 7
NdeII GATC 2 cut(s) 322, 368
NlaIII CATG 2 cut(s) 257, 266
NspI RCATGY 1 cut(s) 266
PaeR7I CTCGAG 1 cut(s) 389
PciI ACATGT 1 cut(s) 262
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PscI ACATGT 1 cut(s) 262
PspXI VCTCGAGB 1 cut(s) 389
RsaI GTAC 2 cut(s) 343, 470
RsaNI GTAC 2 cut(s) 342, 469
RseI CAYNNNNRTG 3 cut(s) 47, 228, 252
SaqAI TTAA 2 cut(s) 125, 449
Sau3AI GATC 2 cut(s) 322, 368
ScaI AGTACT 1 cut(s) 343
SchI GAGTC 1 cut(s) 401
SetI ASST 5 cut(s) 51, 242, 252, 354, 404
SfaNI GCATC 1 cut(s) 375
SfcI CTRYAG 2 cut(s) 297, 406
Sfr274I CTCGAG 1 cut(s) 389
SlaI CTCGAG 1 cut(s) 389
SmiMI CAYNNNNRTG 3 cut(s) 47, 228, 252
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SpeI ACTAGT 1 cut(s) 338
Sse9I AATT 4 cut(s) 7, 113, 291, 312
SspMI CTAG 3 cut(s) 183, 326, 339
TaaI ACNGT 2 cut(s) 346, 410
TaqI TCGA 2 cut(s) 67, 390
TasI AATT 4 cut(s) 7, 113, 291, 312
TatI WGTACW 1 cut(s) 341
Tru1I TTAA 2 cut(s) 125, 449
Tru9I TTAA 2 cut(s) 125, 449
TspDTI ATGAA 4 cut(s) 120, 242, 324, 347
TspGWI ACGGA 1 cut(s) 403
XapI RAATTY 3 cut(s) 113, 291, 312
XbaI TCTAGA 1 cut(s) 325
XceI RCATGY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 2 cut(s) 184, 278
XhoI CTCGAG 1 cut(s) 389
XspI CTAG 3 cut(s) 183, 326, 339
ZrmI AGTACT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.