RLG00000005125

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
65208088 .. 65209666
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005125

Sequence Viewer

Length: 1479 bp
ATGGGGCATGAAGCCCTTCTCGCGGTGGAAGATGATGAAAGTAATAGAAAGAAGCTTGAGATCATACCTAAAGACTATACTGATCACTGGAAGAGATGGCTTGAGAACATTCATGATTGGTGCATTTCGAGGCAGATTTGGTGGGGTCACCGCTTTCCGGCATGGTATGCTGTTTTCGAGGGTGATAAGCTGAAGGAGTTTGGATTGCTTGAAGACAGACGGGTGGTTGCTAGAAGCTTGGAAGAGGCAAAAGCATTGGCTGCTGAAAAATTTGGAGAAGGAAATAAGTATGATTTAAATGAGAATACTAGAGATCCTGATGTGCTTGACACATGGTTTTCTTCTGCTCTCTTCCCATTTTCTGCATTGGGGTGGCCGGATGATACAGAAGATCTCTGGGCTTTCTATCCGAATTCACTTCTTGAAACAGGACATGACATTCTCTTTTTCTGGGTGGTGCGCATGGTAATGCTCGGAATTACTTTGGGTCCTAAGGCTGAGGGTGCAGGAGTTGATGTGATAAACGGTATTAGTCTTGAAGGTCTACATGAGAAGCTTTCAAAGGGAAACTTGGACAAGAAGGAAATAGAGGTTGCGAAAGAGGGGCAAAAGAAGTCCTTTCCTAATGGTATTGAAGAATGTGGTGCAGATGCTCTTCGTTTTGCTCTCATTACCTACACCCATCAGGCTGAGAATATAAATCTAGACATCAACAGGGTGGTGGGTTATCGTCACTGGTGCAACAAACTGTGGAATGCAGTAAGGTTTGCTATGCTCAAACTTGGGGATGGTTATGTTCCACCTTCGAGTGAAATTAATCTGAATGAGCTTCCATTCATTTGCCAGTGGATCCTCTCAGTACTAAACAAAGCAATTGACAAAACTGTTTCGTCAATGGAGTCCTATAAGCTGTCAGATGCAGCCAAAGCTGCGTATGGGTGGTGGCAGAATCAGTTGTGTGATATTTTCATCGAAGCCATCAAACCTTACTTTGCTGGTAATGATCCAAAGTTTGCAGCAGAAAGGGAGTTTGCGAAACACACTCTTTGGCTATTTCTTGACACTGGATTAAGGCTGCTTCATCCTTTTATGCCCTTCATCACAGAAGAATTGTGGCAGCGTCTTCATCTTGCATCATCATCATCATTAGTAGCACCATCATCGATTATGATATGTGACTATCCATGCATGATAGAGTGCTGGAAGAATGAAGAAGTGGAGACTCAGATGGATAATGTTATTATTTCGGTTGTGAATTCTATACGCTCACTTGCAAAAGAAGGTCGTGAACGACGAGCAGCATTTGTGCTTAGTGGGATAAGAGAAGAGAGGGAGTTGATATGCAGCCAGTGTGCAATCATTGAAAAGTTAGCGAATGTGTCACAGTTGGCGATAATCCATGAAGAGGGTGATGCTCCAACTGGATGTGAAGAGTCAAAAGTGAATGACAATCTTTCTGTTTATCTGAAGATACAGTGA

Protein Analysis

493

Amino Acids

56.2

Weight (kDa)

5.08

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1 PF00133 15 - 236 9e-44 tRNA synthetases class I (I, L, M and V)
Anticodon_1 PF08264 282 - 423 1.3e-31 Anticodon-binding domain of tRNA ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 461
AccI GTMKAC 1 cut(s) 544
AccII CGCG 1 cut(s) 23
AciI CCGC 2 cut(s) 23, 151
AclWI GGATC 4 cut(s) 308, 844, 857, 998
AcoI YGGCCR 1 cut(s) 374
AcsI RAATTY 3 cut(s) 269, 412, 1255
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 1 cut(s) 861
AfiI CCNNNNNNNGG 3 cut(s) 22, 157, 1405
AgsI TTSAA 6 cut(s) 212, 425, 539, 561, 635, 1364
AluBI AGCT 7 cut(s) 55, 190, 237, 556, 829, 910, 929
AluI AGCT 7 cut(s) 55, 190, 237, 556, 829, 910, 929
Alw26I GTCTC 1 cut(s) 1214
AlwI GGATC 4 cut(s) 308, 844, 857, 998
AoxI GGCC 1 cut(s) 374
ApeKI GCWGC 8 cut(s) 260, 920, 929, 1016, 1075, 1117, 1298, 1344
ApoI RAATTY 3 cut(s) 269, 412, 1255
AseI ATTAAT 1 cut(s) 816
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 488
AsuHPI GGTGA 3 cut(s) 140, 194, 1421
AvaII GGWCC 1 cut(s) 488
AxyI CCTNAGG 1 cut(s) 492
BamHI GGATCC 1 cut(s) 849
BbsI GAAGAC 2 cut(s) 219, 1115
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 8 cut(s) 247, 916, 932, 1028, 1062, 1129, 1310, 1356
BccI CCATC 6 cut(s) 90, 690, 782, 986, 1165, 1222
BcgI CGANNNNNNTGC 2 cut(s) 1143, 1177
BclI TGATCA 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 1214
BfaI CTAG 3 cut(s) 231, 309, 704
BglII AGATCT 1 cut(s) 391
BisI GCNGC 8 cut(s) 261, 921, 930, 1017, 1076, 1118, 1299, 1345
BlsI GCNGC 8 cut(s) 262, 922, 931, 1018, 1077, 1119, 1300, 1346
BmcAI AGTACT 1 cut(s) 861
Bme18I GGWCC 1 cut(s) 488
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 2 cut(s) 489, 851
BmsI GCATC 4 cut(s) 640, 907, 1142, 1402
BpiI GAAGAC 2 cut(s) 219, 1115
Bpu10I CCTNAGC 1 cut(s) 498
BpuEI CTTGAG 2 cut(s) 77, 122
Bsa29I ATCGAT 1 cut(s) 1163
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 157, 1405
Bse1I ACTGG 6 cut(s) 92, 740, 844, 1069, 1348, 1426
Bse21I CCTNAGG 1 cut(s) 492
BseCI ATCGAT 1 cut(s) 1163
BseGI GGATG 4 cut(s) 385, 793, 1081, 1430
BseLI CCNNNNNNNGG 3 cut(s) 22, 157, 1405
BseMII CTCAG 4 cut(s) 489, 681, 870, 1238
BseNI ACTGG 6 cut(s) 92, 740, 844, 1069, 1348, 1426
BseXI GCAGC 8 cut(s) 247, 916, 932, 1028, 1062, 1129, 1310, 1356
BsgI GTGCAG 2 cut(s) 525, 666
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 376
BshVI ATCGAT 1 cut(s) 1163
BsiSI CCGG 2 cut(s) 158, 377
BslI CCNNNNNNNGG 3 cut(s) 22, 157, 1405
BsmAI GTCTC 1 cut(s) 1214
BsmI GAATGC 1 cut(s) 760
BsnI GGCC 1 cut(s) 376
Bsp143I GATC 6 cut(s) 60, 82, 313, 391, 849, 1003
BspACI CCGC 2 cut(s) 23, 151
BspANI GGCC 1 cut(s) 376
BspCNI CTCAG 4 cut(s) 490, 682, 869, 1237
BspDI ATCGAT 1 cut(s) 1163
BspFNI CGCG 1 cut(s) 23
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 489, 851
BspPI GGATC 4 cut(s) 308, 844, 857, 998
BspQI GCTCTTC 1 cut(s) 660
BsrI ACTGG 6 cut(s) 92, 740, 844, 1069, 1348, 1426
BssMI GATC 6 cut(s) 60, 82, 313, 391, 849, 1003
Bst4CI ACNGT 5 cut(s) 527, 750, 886, 1386, 1476
Bst6I CTCTTC 7 cut(s) 86, 237, 356, 660, 1320, 1398, 1425
BstAPI GCANNNNNTGC 2 cut(s) 167, 260
BstDEI CTNAG 6 cut(s) 492, 498, 690, 856, 1224, 1310
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 4 cut(s) 385, 793, 1081, 1430
BstFNI CGCG 1 cut(s) 23
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 6 cut(s) 63, 85, 316, 394, 852, 1006
BstMAI GTCTC 1 cut(s) 1214
BstMBI GATC 6 cut(s) 60, 82, 313, 391, 849, 1003
BstMWI GCNNNNNNNGC 6 cut(s) 20, 167, 260, 503, 926, 929
BstPI GGTNACC 1 cut(s) 146
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 8 cut(s) 247, 916, 932, 1028, 1062, 1129, 1310, 1356
BstV2I GAAGAC 2 cut(s) 219, 1115
BstX2I RGATCY 3 cut(s) 313, 391, 849
BstYI RGATCY 3 cut(s) 313, 391, 849
Bsu15I ATCGAT 1 cut(s) 1163
Bsu36I CCTNAGG 1 cut(s) 492
BsuRI GGCC 1 cut(s) 376
BsuTUI ATCGAT 1 cut(s) 1163
BtsCI GGATG 4 cut(s) 385, 793, 1081, 1430
BtsIMutI CAGTG 5 cut(s) 85, 733, 851, 1062, 1355
CciI TCATGA 1 cut(s) 112
CfoI GCGC 1 cut(s) 462
Cfr13I GGNCC 1 cut(s) 488
ClaI ATCGAT 1 cut(s) 1163
CseI GACGC 1 cut(s) 1109
Csp6I GTAC 1 cut(s) 860
CviQI GTAC 1 cut(s) 860
DdeI CTNAG 6 cut(s) 492, 498, 690, 856, 1224, 1310
DpnI GATC 6 cut(s) 62, 84, 315, 393, 851, 1005
DpnII GATC 6 cut(s) 60, 82, 313, 391, 849, 1003
DraI TTTAAA 1 cut(s) 297
EaeI YGGCCR 1 cut(s) 374
Eam1104I CTCTTC 7 cut(s) 86, 237, 356, 660, 1320, 1398, 1425
EarI CTCTTC 7 cut(s) 86, 237, 356, 660, 1320, 1398, 1425
Eco47I GGWCC 1 cut(s) 488
Eco57I CTGAAG 1 cut(s) 212
Eco81I CCTNAGG 1 cut(s) 492
Eco91I GGTNACC 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 488
EcoO65I GGTNACC 1 cut(s) 146
EcoRI GAATTC 2 cut(s) 412, 1255
EcoT22I ATGCAT 1 cut(s) 1190
FalI AAGNNNNNCTT 4 cut(s) 554, 586, 602, 634
FbaI TGATCA 1 cut(s) 82
FblI GTMKAC 1 cut(s) 544
Fnu4HI GCNGC 8 cut(s) 261, 921, 930, 1017, 1076, 1118, 1299, 1345
FokI GGATG 4 cut(s) 392, 800, 1068, 1437
Fsp4HI GCNGC 8 cut(s) 261, 921, 930, 1017, 1076, 1118, 1299, 1345
FspAI RTGCGCAY 1 cut(s) 461
FspBI CTAG 3 cut(s) 231, 309, 704
FspI TGCGCA 1 cut(s) 461
GlaI GCGC 1 cut(s) 461
GluI GCNGC 8 cut(s) 261, 921, 930, 1017, 1076, 1118, 1299, 1345
HaeIII GGCC 1 cut(s) 376
HapII CCGG 2 cut(s) 158, 377
HgaI GACGC 1 cut(s) 1109
HhaI GCGC 1 cut(s) 462
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HindIII AAGCTT 3 cut(s) 53, 235, 554
HinfI GANTC 4 cut(s) 899, 949, 1222, 1433
HpaII CCGG 2 cut(s) 158, 377
HphI GGTGA 3 cut(s) 140, 194, 1421
Hpy166II GTNNAC 2 cut(s) 545, 1289
Hpy188I TCNGA 6 cut(s) 411, 476, 822, 916, 1227, 1467
Hpy188III TCNNGA 7 cut(s) 113, 317, 422, 536, 704, 1058, 1286
Hpy8I GTNNAC 2 cut(s) 545, 1289
Hpy99I CGWCG 1 cut(s) 1296
HpyAV CCTTC 8 cut(s) 26, 187, 272, 533, 574, 813, 1105, 1274
HpyCH4III ACNGT 5 cut(s) 527, 750, 886, 1386, 1476
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 167, 260, 503, 926, 929
HpyF3I CTNAG 6 cut(s) 492, 498, 690, 856, 1224, 1310
HspAI GCGC 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 6 cut(s) 60, 82, 313, 391, 849, 1003
LguI GCTCTTC 1 cut(s) 660
LmnI GCTCC 1 cut(s) 1420
Lsp1109I GCAGC 8 cut(s) 247, 916, 932, 1028, 1062, 1129, 1310, 1356
LweI GCATC 4 cut(s) 640, 907, 1142, 1402
MaeI CTAG 3 cut(s) 231, 309, 704
MaeIII GTNAC 4 cut(s) 146, 731, 1175, 1380
MalI GATC 6 cut(s) 62, 84, 315, 393, 851, 1005
MboI GATC 6 cut(s) 60, 82, 313, 391, 849, 1003
MfeI CAATTG 1 cut(s) 873
MflI RGATCY 3 cut(s) 313, 391, 849
MluCI AATT 7 cut(s) 269, 412, 477, 813, 873, 1109, 1255
MlyI GAGTC 3 cut(s) 908, 1216, 1442
MmeI TCCRAC 1 cut(s) 1442
MnlI CCTC 9 cut(s) 123, 172, 238, 493, 583, 595, 863, 1323, 1399
Mph1103I ATGCAT 1 cut(s) 1190
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 3 cut(s) 296, 816, 1070
MslI CAYNNNNRTG 2 cut(s) 370, 467
MspI CCGG 2 cut(s) 158, 377
MunI CAATTG 1 cut(s) 873
Mva1269I GAATGC 1 cut(s) 760
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 6 cut(s) 20, 167, 260, 503, 926, 929
NdeII GATC 6 cut(s) 60, 82, 313, 391, 849, 1003
NlaIV GGNNCC 2 cut(s) 489, 851
NmuCI GTSAC 4 cut(s) 146, 731, 1175, 1380
NsbI TGCGCA 1 cut(s) 461
NsiI ATGCAT 1 cut(s) 1190
PagI TCATGA 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 660
PcsI WCGNNNNNNNCGW 1 cut(s) 1291
PctI GAATGC 1 cut(s) 760
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 949
PkrI GCNGC 8 cut(s) 262, 922, 931, 1018, 1077, 1119, 1300, 1346
PleI GAGTC 3 cut(s) 907, 1216, 1441
PpsI GAGTC 3 cut(s) 907, 1216, 1441
PpuMI RGGWCCY 1 cut(s) 488
PshBI ATTAAT 1 cut(s) 816
Psp5II RGGWCCY 1 cut(s) 488
PspEI GGTNACC 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 489, 851
PspPI GGNCC 1 cut(s) 488
PspPPI RGGWCCY 1 cut(s) 488
PsuI RGATCY 3 cut(s) 313, 391, 849
RsaI GTAC 1 cut(s) 861
RsaNI GTAC 1 cut(s) 860
RseI CAYNNNNRTG 2 cut(s) 370, 467
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 3 cut(s) 296, 816, 1070
SatI GCNGC 8 cut(s) 261, 921, 930, 1017, 1076, 1118, 1299, 1345
Sau3AI GATC 6 cut(s) 60, 82, 313, 391, 849, 1003
Sau96I GGNCC 1 cut(s) 488
ScaI AGTACT 1 cut(s) 861
SchI GAGTC 3 cut(s) 908, 1216, 1442
SfaNI GCATC 4 cut(s) 640, 907, 1142, 1402
SinI GGWCC 1 cut(s) 488
SmiI ATTTAAAT 1 cut(s) 297
SmiMI CAYNNNNRTG 2 cut(s) 370, 467
SmlI CTYRAG 2 cut(s) 56, 101
SmoI CTYRAG 2 cut(s) 56, 101
Sse9I AATT 7 cut(s) 269, 412, 477, 813, 873, 1109, 1255
SsiI CCGC 2 cut(s) 23, 151
SspMI CTAG 3 cut(s) 231, 309, 704
SwaI ATTTAAAT 1 cut(s) 297
TaaI ACNGT 5 cut(s) 527, 750, 886, 1386, 1476
TaqI TCGA 5 cut(s) 128, 177, 806, 972, 1163
TasI AATT 7 cut(s) 269, 412, 477, 813, 873, 1109, 1255
TatI WGTACW 1 cut(s) 859
TfiI GAWTC 1 cut(s) 949
Tru1I TTAA 3 cut(s) 296, 816, 1070
Tru9I TTAA 3 cut(s) 296, 816, 1070
TscAI CASTG 5 cut(s) 92, 740, 851, 1069, 1355
TseFI GTSAC 4 cut(s) 146, 731, 1175, 1380
TseI GCWGC 8 cut(s) 260, 920, 929, 1016, 1075, 1117, 1298, 1344
Tsp45I GTSAC 4 cut(s) 146, 731, 1175, 1380
TspRI CASTG 5 cut(s) 92, 740, 851, 1069, 1355
VpaK11BI GGWCC 1 cut(s) 488
VspI ATTAAT 1 cut(s) 816
XapI RAATTY 3 cut(s) 269, 412, 1255
XbaI TCTAGA 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 544
XmnI GAANNNNTTC 1 cut(s) 15
XspI CTAG 3 cut(s) 231, 309, 704
ZrmI AGTACT 1 cut(s) 861
Zsp2I ATGCAT 1 cut(s) 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.