Rmu_sc0017871.1_g000001

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017871.1
Physical Location & Seq
Reverse (-)
384 .. 2636
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017871.1_g000001.1.cds

Sequence Viewer

Length: 1254 bp
atggttcgagatgcacacgggcgtaaaatgtcaaagggcttgggcaatgtcattgaccctgttgacataataaatggtatcaccctagaacgtctacatgatagacttttagagggaaatctggaccccaaggaattagataaggccagagagggacaattgaaggacttccctgatggtattcctgagtgtggtgcggatgctctgcggttttctcttatctcgtacactgctcagtccgataagataaatctggatatccaaagggttgtgggttaccgtcagtggtgtaacaaactttggaatgcagtgcgatttggtttgagtatacttggggatgattatgttccgccctcaaatgtaaatccagatgtgttgccattcagttgccgatggattctctcagtgctaaatgaagccatatccaaaactgttatgtcattggaatcatacgagttctcagatgcagcaactgctgtttatgcttggtggcagtaccagctgtgtgatgtcttcattgagactatcaaaccttacttttctggcaatgatccaaagtttgcaacagagaggggttttgcacgggacactctgtgggtatgtcttgacaatggcctgaggttacttcatcctttcatgccatatgtgacagaagaactgtggcaacgtctgccgtcgccagggcattacaaaagggcatcatcaattatgatgagcgagtacccattgatcatagagagctggaaaaatgaaagggtggagcttgatatgtctcttattgagttggttgtgaagtctctccgatctcttgcccagggaagtcgtgaaaggagacaaggttatgtgctttgtagagcaagtttgggaaagcgcgaccaggaggcaataagcaatcatcaactggaaattaaaacgcttgctaatgtgtcgtctttgacggtaatcgatgagaacaatgctgctccaactagatgtgcagtgtctgttgtgaatgaaaagctttctgtttatctcaagcttcatgcatctggttctccaggaacagatcttgaaaagatccggaaaaggattgaatacattacattggaacatgagaggctatcgaagaaattgaatatgcttgctgctaatgaagataaggtccccgagaaggttacaagagatactgctgacaagctggaatcccttgagaaggaaaagttgtctcttgaagagtcgattcaacttatggaaacacaggagatgaacttttaa

Protein Analysis

417

Amino Acids

47.54

Weight (kDa)

5.59

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 94, 328
AccII CGCG 1 cut(s) 873
AccIII TCCGGA 1 cut(s) 1059
AciI CCGC 3 cut(s) 197, 208, 350
AclWI GGATC 2 cut(s) 545, 1051
AdeI CACNNNGTG 1 cut(s) 594
AfaI GTAC 3 cut(s) 227, 497, 722
AfiI CCNNNNNNNGG 4 cut(s) 191, 680, 1150, 1192
AgsI TTSAA 6 cut(s) 163, 1052, 1073, 1114, 1211, 1223
AjnI CCWGG 4 cut(s) 679, 813, 876, 1036
AluBI AGCT 6 cut(s) 502, 741, 763, 1000, 1018, 1177
AluI AGCT 6 cut(s) 502, 741, 763, 1000, 1018, 1177
Alw26I GTCTC 5 cut(s) 515, 777, 801, 826, 1209
AlwI GGATC 2 cut(s) 545, 1051
AlwNI CAGNNNCTG 2 cut(s) 473, 983
Ama87I CYCGRG 1 cut(s) 1145
Aor13HI TCCGGA 1 cut(s) 1059
AoxI GGCC 2 cut(s) 144, 613
ApeKI GCWGC 3 cut(s) 467, 959, 1124
Asp700I GAANNNNTTC 1 cut(s) 167
AspLEI GCGC 1 cut(s) 873
AspS9I GGNCC 2 cut(s) 124, 1141
AsuHPI GGTGA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 1145
AvaII GGWCC 2 cut(s) 124, 1141
AxyI CCTNAGG 1 cut(s) 617
BbsI GAAGAC 1 cut(s) 505
BbvI GCAGC 3 cut(s) 479, 946, 1111
BccI CCATC 2 cut(s) 170, 387
BceAI ACGGC 1 cut(s) 658
BciT130I CCWGG 4 cut(s) 681, 815, 878, 1038
BclI TGATCA 1 cut(s) 729
BcoDI GTCTC 5 cut(s) 515, 777, 801, 826, 1209
BfaI CTAG 2 cut(s) 86, 969
BglII AGATCT 1 cut(s) 1045
BisI GCNGC 3 cut(s) 468, 960, 1125
BlsI GCNGC 3 cut(s) 469, 961, 1126
Bme1390I CCNGG 4 cut(s) 681, 815, 878, 1038
Bme18I GGWCC 2 cut(s) 124, 1141
BmeT110I CYCGRG 1 cut(s) 1145
BmgT120I GGNCC 2 cut(s) 124, 1141
BmiI GGNNCC 2 cut(s) 126, 1143
BmrFI CCNGG 4 cut(s) 681, 815, 878, 1038
BmsI GCATC 4 cut(s) 190, 454, 707, 1034
BpiI GAAGAC 1 cut(s) 505
BpmI CTGGAG 1 cut(s) 1020
BpuEI CTTGAG 2 cut(s) 998, 1208
Bsa29I ATCGAT 1 cut(s) 945
BsaJI CCNNGG 4 cut(s) 129, 680, 813, 814
BsaWI WCCGGW 1 cut(s) 1059
BsaXI ACNNNNNCTCC 2 cut(s) 823, 853
Bsc4I CCNNNNNNNGG 4 cut(s) 191, 680, 1150, 1192
Bse1I ACTGG 1 cut(s) 906
Bse21I CCTNAGG 1 cut(s) 617
Bse3DI GCAATG 2 cut(s) 52, 553
BseAI TCCGGA 1 cut(s) 1059
BseBI CCWGG 4 cut(s) 681, 815, 878, 1038
BseCI ATCGAT 1 cut(s) 945
BseDI CCNNGG 4 cut(s) 129, 680, 813, 814
BseGI GGATG 3 cut(s) 205, 343, 628
BseLI CCNNNNNNNGG 4 cut(s) 191, 680, 1150, 1192
BseMI GCAATG 2 cut(s) 52, 553
BseMII CTCAG 5 cut(s) 177, 248, 417, 474, 608
BseNI ACTGG 1 cut(s) 906
BseXI GCAGC 3 cut(s) 479, 946, 1111
BsgI GTGCAG 1 cut(s) 996
Bsh1236I CGCG 1 cut(s) 873
BshFI GGCC 2 cut(s) 146, 615
BshVI ATCGAT 1 cut(s) 945
BsiHKCI CYCGRG 1 cut(s) 1145
BsiSI CCGG 1 cut(s) 1060
BslFI GGGAC 3 cut(s) 168, 599, 1127
BslI CCNNNNNNNGG 4 cut(s) 191, 680, 1150, 1192
BsmAI GTCTC 5 cut(s) 515, 777, 801, 826, 1209
BsmFI GGGAC 3 cut(s) 168, 599, 1127
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 2 cut(s) 146, 615
BsoBI CYCGRG 1 cut(s) 1145
Bsp13I TCCGGA 1 cut(s) 1059
Bsp143I GATC 5 cut(s) 550, 729, 803, 1045, 1056
BspACI CCGC 3 cut(s) 197, 208, 350
BspANI GGCC 2 cut(s) 146, 615
BspCNI CTCAG 5 cut(s) 178, 247, 416, 473, 609
BspDI ATCGAT 1 cut(s) 945
BspEI TCCGGA 1 cut(s) 1059
BspFNI CGCG 1 cut(s) 873
BspLI GGNNCC 2 cut(s) 126, 1143
BspPI GGATC 2 cut(s) 545, 1051
BsrDI GCAATG 2 cut(s) 52, 553
BsrI ACTGG 1 cut(s) 906
BssECI CCNNGG 4 cut(s) 129, 680, 813, 814
BssMI GATC 5 cut(s) 550, 729, 803, 1045, 1056
BssNAI GTATAC 1 cut(s) 329
BssT1I CCWWGG 1 cut(s) 129
Bst1107I GTATAC 1 cut(s) 329
Bst2UI CCWGG 4 cut(s) 681, 815, 878, 1038
Bst4CI ACNGT 4 cut(s) 281, 433, 660, 940
Bst6I CTCTTC 1 cut(s) 1206
BstAPI GCANNNNNTGC 2 cut(s) 473, 670
BstC8I GCNNGC 2 cut(s) 918, 1122
BstDEI CTNAG 5 cut(s) 186, 234, 403, 460, 617
BstEII GGTNACC 1 cut(s) 275
BstENI CCTNNNNNAGG 1 cut(s) 1190
BstF5I GGATG 3 cut(s) 205, 343, 628
BstFNI CGCG 1 cut(s) 873
BstHHI GCGC 1 cut(s) 873
BstKTI GATC 5 cut(s) 553, 732, 806, 1048, 1059
BstMAI GTCTC 5 cut(s) 515, 777, 801, 826, 1209
BstMBI GATC 5 cut(s) 550, 729, 803, 1045, 1056
BstMWI GCNNNNNNNGC 4 cut(s) 473, 482, 499, 670
BstNI CCWGG 4 cut(s) 681, 815, 878, 1038
BstPI GGTNACC 1 cut(s) 275
BstSCI CCNGG 4 cut(s) 679, 813, 876, 1036
BstUI CGCG 1 cut(s) 873
BstV1I GCAGC 3 cut(s) 479, 946, 1111
BstV2I GAAGAC 1 cut(s) 505
BstX2I RGATCY 2 cut(s) 1045, 1056
BstYI RGATCY 2 cut(s) 1045, 1056
BstZ17I GTATAC 1 cut(s) 329
Bsu15I ATCGAT 1 cut(s) 945
Bsu36I CCTNAGG 1 cut(s) 617
BsuRI GGCC 2 cut(s) 146, 615
BsuTUI ATCGAT 1 cut(s) 945
BtsCI GGATG 3 cut(s) 205, 343, 628
BtsI GCAGTG 3 cut(s) 228, 315, 984
BtsIMutI CAGTG 5 cut(s) 228, 290, 315, 411, 984
Cac8I GCNNGC 2 cut(s) 918, 1122
CaiI CAGNNNCTG 2 cut(s) 473, 983
CfoI GCGC 1 cut(s) 873
Cfr13I GGNCC 2 cut(s) 124, 1141
ClaI ATCGAT 1 cut(s) 945
Csp6I GTAC 3 cut(s) 226, 496, 721
CviAII CATG 4 cut(s) 98, 637, 1022, 1091
CviQI GTAC 3 cut(s) 226, 496, 721
DdeI CTNAG 5 cut(s) 186, 234, 403, 460, 617
DpnI GATC 5 cut(s) 552, 731, 805, 1047, 1058
DpnII GATC 5 cut(s) 550, 729, 803, 1045, 1056
DraIII CACNNNGTG 1 cut(s) 594
Eam1104I CTCTTC 1 cut(s) 1206
EarI CTCTTC 1 cut(s) 1206
EciI GGCGGA 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 129
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 124, 1141
Eco81I CCTNAGG 1 cut(s) 617
Eco88I CYCGRG 1 cut(s) 1145
Eco91I GGTNACC 1 cut(s) 275
EcoNI CCTNNNNNAGG 1 cut(s) 1190
EcoO109I RGGNCCY 1 cut(s) 1141
EcoO65I GGTNACC 1 cut(s) 275
EcoRII CCWGG 4 cut(s) 679, 813, 876, 1036
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 129
EcoT22I ATGCAT 1 cut(s) 1027
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 4 cut(s) 101, 640, 1025, 1094
FaqI GGGAC 3 cut(s) 168, 599, 1127
FatI CATG 4 cut(s) 97, 636, 1021, 1090
FauNDI CATATG 1 cut(s) 643
FbaI TGATCA 1 cut(s) 729
FblI GTMKAC 2 cut(s) 94, 328
Fnu4HI GCNGC 3 cut(s) 468, 960, 1125
FokI GGATG 3 cut(s) 212, 350, 615
Fsp4HI GCNGC 3 cut(s) 468, 960, 1125
FspBI CTAG 2 cut(s) 86, 969
GlaI GCGC 1 cut(s) 872
GluI GCNGC 3 cut(s) 468, 960, 1125
GsuI CTGGAG 1 cut(s) 1020
HaeIII GGCC 2 cut(s) 146, 615
HapII CCGG 1 cut(s) 1060
HhaI GCGC 1 cut(s) 873
Hin1II CATG 4 cut(s) 101, 640, 1025, 1094
Hin6I GCGC 1 cut(s) 871
HinP1I GCGC 1 cut(s) 871
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HindIII AAGCTT 2 cut(s) 998, 1016
HinfI GANTC 5 cut(s) 397, 446, 1181, 1214, 1219
HpaII CCGG 1 cut(s) 1060
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 4 cut(s) 64, 95, 228, 329
Hpy188I TCNGA 3 cut(s) 241, 463, 803
Hpy8I GTNNAC 4 cut(s) 64, 95, 228, 329
Hpy99I CGWCG 1 cut(s) 679
HpyAV CCTTC 3 cut(s) 157, 1144, 1186
HpyCH4III ACNGT 4 cut(s) 281, 433, 660, 940
HpyCH4IV ACGT 2 cut(s) 91, 667
HpyCH4V TGCA 7 cut(s) 14, 308, 467, 563, 581, 977, 1025
HpyF10VI GCNNNNNNNGC 4 cut(s) 473, 482, 499, 670
HpyF3I CTNAG 5 cut(s) 186, 234, 403, 460, 617
HpySE526I ACGT 2 cut(s) 91, 667
Hsp92II CATG 4 cut(s) 101, 640, 1025, 1094
HspAI GCGC 1 cut(s) 871
Kpn2I TCCGGA 1 cut(s) 1059
Ksp22I TGATCA 1 cut(s) 729
Kzo9I GATC 5 cut(s) 550, 729, 803, 1045, 1056
LmnI GCTCC 2 cut(s) 760, 967
Lsp1109I GCAGC 3 cut(s) 479, 946, 1111
LweI GCATC 4 cut(s) 190, 454, 707, 1034
MaeI CTAG 2 cut(s) 86, 969
MaeII ACGT 2 cut(s) 91, 667
MaeIII GTNAC 5 cut(s) 275, 290, 621, 646, 1153
MalI GATC 5 cut(s) 552, 731, 805, 1047, 1058
MboI GATC 5 cut(s) 550, 729, 803, 1045, 1056
MboII GAAGA 5 cut(s) 505, 665, 1117, 1145, 1223
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 2 cut(s) 1045, 1056
MluCI AATT 5 cut(s) 134, 158, 705, 906, 1109
MlyI GAGTC 1 cut(s) 1223
MmeI TCCRAC 1 cut(s) 989
MnlI CCTC 7 cut(s) 106, 145, 364, 564, 612, 874, 1089
Mph1103I ATGCAT 1 cut(s) 1027
MroI TCCGGA 1 cut(s) 1059
MroXI GAANNNNTTC 1 cut(s) 167
MseI TTAA 2 cut(s) 909, 1252
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 1 cut(s) 1060
MspR9I CCNGG 4 cut(s) 681, 815, 878, 1038
MunI CAATTG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 4 cut(s) 681, 815, 878, 1038
MvnI CGCG 1 cut(s) 873
MwoI GCNNNNNNNGC 4 cut(s) 473, 482, 499, 670
NdeI CATATG 1 cut(s) 643
NdeII GATC 5 cut(s) 550, 729, 803, 1045, 1056
NlaIII CATG 4 cut(s) 101, 640, 1025, 1094
NlaIV GGNNCC 2 cut(s) 126, 1143
NmuCI GTSAC 1 cut(s) 646
NsiI ATGCAT 1 cut(s) 1027
PasI CCCWGGG 1 cut(s) 814
PctI GAATGC 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 4 cut(s) 397, 446, 1181, 1219
PfoI TCCNGGA 1 cut(s) 1036
PkrI GCNGC 3 cut(s) 469, 961, 1126
PleI GAGTC 1 cut(s) 1222
PpsI GAGTC 1 cut(s) 1222
PpuMI RGGWCCY 1 cut(s) 1141
Psp5II RGGWCCY 1 cut(s) 1141
Psp6I CCWGG 4 cut(s) 679, 813, 876, 1036
PspEI GGTNACC 1 cut(s) 275
PspGI CCWGG 4 cut(s) 679, 813, 876, 1036
PspN4I GGNNCC 2 cut(s) 126, 1143
PspPI GGNCC 2 cut(s) 124, 1141
PspPPI RGGWCCY 1 cut(s) 1141
PstNI CAGNNNCTG 2 cut(s) 473, 983
PsuI RGATCY 2 cut(s) 1045, 1056
PvuII CAGCTG 1 cut(s) 502
RsaI GTAC 3 cut(s) 227, 497, 722
RsaNI GTAC 3 cut(s) 226, 496, 721
SaqAI TTAA 2 cut(s) 909, 1252
SatI GCNGC 3 cut(s) 468, 960, 1125
Sau3AI GATC 5 cut(s) 550, 729, 803, 1045, 1056
Sau96I GGNCC 2 cut(s) 124, 1141
SchI GAGTC 1 cut(s) 1223
ScrFI CCNGG 4 cut(s) 681, 815, 878, 1038
SfaNI GCATC 4 cut(s) 190, 454, 707, 1034
SinI GGWCC 2 cut(s) 124, 1141
SmlI CTYRAG 2 cut(s) 1013, 1187
SmoI CTYRAG 2 cut(s) 1013, 1187
Sse9I AATT 5 cut(s) 134, 158, 705, 906, 1109
SsiI CCGC 3 cut(s) 197, 208, 350
SspMI CTAG 2 cut(s) 86, 969
StyD4I CCNGG 4 cut(s) 679, 813, 876, 1036
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 4 cut(s) 281, 433, 660, 940
TaiI ACGT 2 cut(s) 94, 670
TaqI TCGA 4 cut(s) 7, 945, 1103, 1217
TasI AATT 5 cut(s) 134, 158, 705, 906, 1109
TfiI GAWTC 4 cut(s) 397, 446, 1181, 1219
Tru1I TTAA 2 cut(s) 909, 1252
Tru9I TTAA 2 cut(s) 909, 1252
TscAI CASTG 5 cut(s) 235, 290, 315, 411, 984
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 3 cut(s) 467, 959, 1124
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 8 cut(s) 429, 505, 617, 625, 765, 1008, 1010, 1146
TspRI CASTG 5 cut(s) 235, 290, 315, 411, 984
VpaK11BI GGWCC 2 cut(s) 124, 1141
XagI CCTNNNNNAGG 1 cut(s) 1190
XmiI GTMKAC 2 cut(s) 94, 328
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 2 cut(s) 86, 969
Zsp2I ATGCAT 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.