Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037577.1

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

2011 .. 2595

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037577.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgctcggaattactttgggtcctgaagctgagggtgcaggaggtaatgtgccttttccaaaggtgtacttgcacctgatgatttgtgatgcgcaagggcgtaaaatgtcaaagtctttggggaatgtggttgatccagttgatgtgataaacggtattagtcttgaaggtctacatgagaagctttcaaagggaaacttggacaagaaggaaatagaggttgcgaaagaggggcaaaagaagtcctttcctaatggtattgaagaatgtggtgcagatgctcttcgttttgctctcattacctacacccatcaggctgagaatataaatctagacatcaacagggtgatgggttatcgtcactggtgcaacaaactgtggaatgcagtaaggtttgctatgctcaaacttggggatggttatgttccaccttcgagtgaaattaatccgaatgagcttccattcatttgccagtggatcctctcagtactaaacaaagaaattgacagaactgtttcgtcaatggagtcctataagctgtgcagccaaagctgtgtatgggtggtggcagaatcagttgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

194

Amino Acids

21.48

Weight (kDa)

5.83

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	172
AclWI	GGATC	3 cut(s)	128, 472, 485
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	2 cut(s)	68, 489
AgsI	TTSAA	3 cut(s)	167, 189, 263
AluBI	AGCT	5 cut(s)	29, 184, 457, 538, 552
AluI	AGCT	5 cut(s)	29, 184, 457, 538, 552
AlwI	GGATC	3 cut(s)	128, 472, 485
ApeKI	GCWGC	1 cut(s)	543
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	514
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	477
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	555
BccI	CCATC	3 cut(s)	318, 343, 410
BfaI	CTAG	1 cut(s)	332
BisI	GCNGC	1 cut(s)	544
BlsI	GCNGC	1 cut(s)	545
BmcAI	AGTACT	1 cut(s)	489
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	21, 479
BmsI	GCATC	2 cut(s)	79, 268
Bpu10I	CCTNAGC	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bse1I	ACTGG	3 cut(s)	137, 368, 472
BseGI	GGATG	1 cut(s)	421
BseMII	CTCAG	3 cut(s)	21, 309, 498
BseNI	ACTGG	3 cut(s)	137, 368, 472
BseXI	GCAGC	1 cut(s)	555
BsgI	GTGCAG	3 cut(s)	57, 294, 562
BsmI	GAATGC	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	133, 477
BspCNI	CTCAG	3 cut(s)	22, 310, 497
BspLI	GGNNCC	2 cut(s)	21, 479
BspPI	GGATC	3 cut(s)	128, 472, 485
BspQI	GCTCTTC	1 cut(s)	288
BsrI	ACTGG	3 cut(s)	137, 368, 472
BssMI	GATC	2 cut(s)	133, 477
Bst4CI	ACNGT	3 cut(s)	155, 378, 514
Bst6I	CTCTTC	1 cut(s)	288
BstDEI	CTNAG	3 cut(s)	30, 318, 484
BstF5I	GGATG	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	2 cut(s)	136, 480
BstMBI	GATC	2 cut(s)	133, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 549
BstV1I	GCAGC	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	361, 479
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	67, 488
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	7 cut(s)	29, 184, 317, 457, 538, 546, 552
CviKI_1	RGCY	7 cut(s)	29, 184, 317, 457, 538, 546, 552
CviQI	GTAC	2 cut(s)	67, 488
DdeI	CTNAG	3 cut(s)	30, 318, 484
DpnI	GATC	2 cut(s)	135, 479
DpnII	GATC	2 cut(s)	133, 477
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	20
FaeI	CATG	1 cut(s)	179
FaiI	YATR	6 cut(s)	177, 326, 401, 423, 534, 559
FalI	AAGNNNNNCTT	6 cut(s)	53, 85, 182, 214, 230, 262
FatI	CATG	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	544
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	1 cut(s)	544
FspBI	CTAG	1 cut(s)	332
FspI	TGCGCA	1 cut(s)	93
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	544
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	2 cut(s)	527, 572
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	2 cut(s)	67, 173
Hpy188I	TCNGA	2 cut(s)	8, 450
Hpy188III	TCNNGA	3 cut(s)	23, 164, 332
Hpy8I	GTNNAC	2 cut(s)	67, 173
HpyAV	CCTTC	3 cut(s)	161, 202, 441
HpyCH4III	ACNGT	3 cut(s)	155, 378, 514
HpyCH4V	TGCA	6 cut(s)	38, 73, 275, 369, 386, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 549
HpyF3I	CTNAG	3 cut(s)	30, 318, 484
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	133, 477
LguI	GCTCTTC	1 cut(s)	288
LpnPI	CCDG	8 cut(s)	24, 36, 89, 150, 299, 328, 349, 485
Lsp1109I	GCAGC	1 cut(s)	555
LweI	GCATC	2 cut(s)	79, 268
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	2 cut(s)	135, 479
MboI	GATC	2 cut(s)	133, 477
MboII	GAAGA	2 cut(s)	275, 275
MflI	RGATCY	1 cut(s)	477
MluCI	AATT	3 cut(s)	9, 441, 501
MlyI	GAGTC	1 cut(s)	536
MnlI	CCTC	5 cut(s)	25, 35, 211, 223, 491
MroXI	GAANNNNTTC	1 cut(s)	514
MseI	TTAA	1 cut(s)	444
Mva1269I	GAATGC	1 cut(s)	388
MwoI	GCNNNNNNNGC	2 cut(s)	35, 549
NdeII	GATC	2 cut(s)	133, 477
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	2 cut(s)	21, 479
NmuCI	GTSAC	1 cut(s)	359
NsbI	TGCGCA	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	288
PctI	GAATGC	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	572
PkrI	GCNGC	1 cut(s)	545
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
PpuMI	RGGWCCY	1 cut(s)	20
PshBI	ATTAAT	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	21, 479
PspPI	GGNCC	1 cut(s)	20
PspPPI	RGGWCCY	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	477
RsaI	GTAC	2 cut(s)	68, 489
RsaNI	GTAC	2 cut(s)	67, 488
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	1 cut(s)	544
Sau3AI	GATC	2 cut(s)	133, 477
Sau96I	GGNCC	1 cut(s)	20
ScaI	AGTACT	1 cut(s)	489
SchI	GAGTC	1 cut(s)	536
SfaNI	GCATC	2 cut(s)	79, 268
SinI	GGWCC	1 cut(s)	20
Sse9I	AATT	3 cut(s)	9, 441, 501
SspMI	CTAG	1 cut(s)	332
TaaI	ACNGT	3 cut(s)	155, 378, 514
TaqI	TCGA	1 cut(s)	434
TasI	AATT	3 cut(s)	9, 441, 501
TatI	WGTACW	2 cut(s)	66, 487
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	368, 479
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	1 cut(s)	543
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	454
TspRI	CASTG	2 cut(s)	368, 479
VpaK11BI	GGWCC	1 cut(s)	20
VspI	ATTAAT	1 cut(s)	444
XbaI	TCTAGA	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	514
XspI	CTAG	1 cut(s)	332
ZrmI	AGTACT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.