Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

13050837 .. 13052611

Gene Structure 1775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAAAACCTTCAAACCAGGGTCCAAATCCTTCTTGGTTCTTGCTAAGGAGGTTGAGGCGAGTTCAATGAGACAAGAATCACAAGGATTGATGCCCTGTAGCATGAGATATCTCGATTGGAACCAAAACGGGCTCAAACCGGGCGGAGCTTCCCGCCGTTCTTTGGCGGCGGTGTTGCGGCGCAAGGTTGCCCCCGGTAGGCTGCGCAAGGCCGATACGAAGTTAATGGAGGTGGTCCGACGCCGTTTGGTGGCCGGTGGAGGGAGAGAGAGACCGGAGAAGCTGTGCTATGTTTTCGAATGGGTTTCGGACGAGAAAGAGAGTGTGCGAGGCCTCTTCAAAGAAACTAAGACGAATGAGATGTGTCTTAGAATTTGCTCTAGAAATAAAGATGTTGTGGACCCTATGATAAAGCTCCAGTGGTACATTAAATGCAGCGATATGGGAAATGAAGCTCTCAATGCTGTCGCCGATGATGAAAATAGGAGCCGGAGATTATCCCTAGACAAGATATCGCTGATTGGAAAGGCCGGTGCTCACTTTTTCCTTATTGTGCTGTATGAAATTTCTGGTTTATATGCATTGCCAGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

198

Amino Acids

22.41

Weight (kDa)

9.73

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	206
AciI	CCGC	5 cut(s)	144, 154, 167, 170, 178
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	2 cut(s)	372, 564
AcyI	GRCGYC	1 cut(s)	241
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	4 cut(s)	163, 198, 250, 261
AgsI	TTSAA	3 cut(s)	13, 66, 340
AjnI	CCWGG	2 cut(s)	16, 586
AluBI	AGCT	4 cut(s)	149, 283, 415, 455
AluI	AGCT	4 cut(s)	149, 283, 415, 455
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	2 cut(s)	64, 265
AoxI	GGCC	4 cut(s)	210, 252, 331, 528
ApeKI	GCWGC	2 cut(s)	202, 435
ApoI	RAATTY	2 cut(s)	372, 564
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	183, 207
AspS9I	GGNCC	3 cut(s)	21, 235, 400
AsuC2I	CCSGG	2 cut(s)	141, 195
AsuII	TTCGAA	1 cut(s)	297
AvaII	GGWCC	3 cut(s)	21, 235, 400
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	2 cut(s)	189, 447
BceAI	ACGGC	2 cut(s)	141, 228
BciT130I	CCWGG	2 cut(s)	18, 588
BcnI	CCSGG	2 cut(s)	141, 195
BcoDI	GTCTC	2 cut(s)	64, 265
BfaI	CTAG	2 cut(s)	381, 503
BfmI	CTRYAG	1 cut(s)	97
BisI	GCNGC	4 cut(s)	168, 179, 203, 436
BlsI	GCNGC	4 cut(s)	169, 180, 204, 437
Bme1390I	CCNGG	4 cut(s)	18, 141, 195, 588
Bme18I	GGWCC	3 cut(s)	21, 235, 400
BmgT120I	GGNCC	3 cut(s)	21, 235, 400
BmiI	GGNNCC	4 cut(s)	22, 122, 402, 488
BmrFI	CCNGG	4 cut(s)	18, 141, 195, 588
BmsI	GCATC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	401
Bpu10I	CCTNAGC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	297
BpuMI	CCSGG	2 cut(s)	141, 195
BsaHI	GRCGYC	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	17, 193
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 198, 250, 261
Bse118I	RCCGGY	2 cut(s)	254, 530
Bse1I	ACTGG	1 cut(s)	418
Bse3DI	GCAATG	1 cut(s)	581
BseBI	CCWGG	2 cut(s)	18, 588
BseDI	CCNNGG	2 cut(s)	17, 193
BseLI	CCNNNNNNNGG	4 cut(s)	163, 198, 250, 261
BseMI	GCAATG	1 cut(s)	581
BseNI	ACTGG	1 cut(s)	418
BseXI	GCAGC	2 cut(s)	189, 447
BshFI	GGCC	4 cut(s)	212, 254, 333, 530
BsiHKAI	GWGCWC	1 cut(s)	538
BsiSI	CCGG	6 cut(s)	140, 195, 255, 275, 490, 531
BslI	CCNNNNNNNGG	4 cut(s)	163, 198, 250, 261
BsmAI	GTCTC	2 cut(s)	64, 265
BsnI	GGCC	4 cut(s)	212, 254, 333, 530
Bso31I	GGTCTC	1 cut(s)	265
Bsp119I	TTCGAA	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	135, 538
BspACI	CCGC	5 cut(s)	144, 154, 167, 170, 178
BspANI	GGCC	4 cut(s)	212, 254, 333, 530
BspLI	GGNNCC	4 cut(s)	22, 122, 402, 488
BspT104I	TTCGAA	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	581
BsrFI	RCCGGY	2 cut(s)	254, 530
BsrI	ACTGG	1 cut(s)	418
BssAI	RCCGGY	2 cut(s)	254, 530
BssECI	CCNNGG	2 cut(s)	17, 193
BssNI	GRCGYC	1 cut(s)	241
Bst2UI	CCWGG	2 cut(s)	18, 588
Bst6I	CTCTTC	1 cut(s)	341
BstACI	GRCGYC	1 cut(s)	241
BstBI	TTCGAA	1 cut(s)	297
BstDEI	CTNAG	3 cut(s)	45, 348, 368
BstHHI	GCGC	2 cut(s)	183, 207
BstMAI	GTCTC	2 cut(s)	64, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	2 cut(s)	18, 588
BstSCI	CCNGG	4 cut(s)	16, 139, 193, 586
BstSFI	CTRYAG	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	189, 447
BsuRI	GGCC	4 cut(s)	212, 254, 333, 530
BtsIMutI	CAGTG	1 cut(s)	425
CfoI	GCGC	2 cut(s)	183, 207
Cfr10I	RCCGGY	2 cut(s)	254, 530
Cfr13I	GGNCC	3 cut(s)	21, 235, 400
CseI	GACGC	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	1 cut(s)	103
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	3 cut(s)	45, 348, 368
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
EciI	GGCGGA	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	265
Eco32I	GATATC	2 cut(s)	110, 513
Eco47I	GGWCC	3 cut(s)	21, 235, 400
EcoRII	CCWGG	2 cut(s)	16, 586
EcoRV	GATATC	2 cut(s)	110, 513
EcoT22I	ATGCAT	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	1 cut(s)	106
FaiI	YATR	7 cut(s)	104, 291, 407, 443, 561, 577, 579
FatI	CATG	1 cut(s)	102
FauI	CCCGC	1 cut(s)	161
Fnu4HI	GCNGC	4 cut(s)	168, 179, 203, 436
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	4 cut(s)	168, 179, 203, 436
FspBI	CTAG	2 cut(s)	381, 503
FspI	TGCGCA	1 cut(s)	206
GlaI	GCGC	2 cut(s)	182, 206
GluI	GCNGC	4 cut(s)	168, 179, 203, 436
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	4 cut(s)	212, 254, 333, 530
HapII	CCGG	6 cut(s)	140, 195, 255, 275, 490, 531
HgaI	GACGC	1 cut(s)	249
HhaI	GCGC	2 cut(s)	183, 207
Hin1I	GRCGYC	1 cut(s)	241
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	2 cut(s)	181, 205
HinP1I	GCGC	2 cut(s)	181, 205
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	6 cut(s)	140, 195, 255, 275, 490, 531
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	2 cut(s)	239, 310
Hpy188III	TCNNGA	2 cut(s)	113, 381
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	2 cut(s)	19, 40
HpyCH4V	TGCA	2 cut(s)	435, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	3 cut(s)	45, 348, 368
Hsp92I	GRCGYC	1 cut(s)	241
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	2 cut(s)	181, 205
LmnI	GCTCC	3 cut(s)	146, 420, 486
Lsp1109I	GCAGC	2 cut(s)	189, 447
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	381, 503
MboII	GAAGA	1 cut(s)	328
MhlI	GDGCHC	2 cut(s)	135, 538
MluCI	AATT	2 cut(s)	372, 564
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	6 cut(s)	43, 49, 223, 254, 323, 344
Mph1103I	ATGCAT	1 cut(s)	583
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	224, 429
MspI	CCGG	6 cut(s)	140, 195, 255, 275, 490, 531
MspR9I	CCNGG	4 cut(s)	18, 141, 195, 588
MvaI	CCWGG	2 cut(s)	18, 588
MwoI	GCNNNNNNNGC	1 cut(s)	461
NciI	CCSGG	2 cut(s)	141, 195
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	4 cut(s)	22, 122, 402, 488
NsbI	TGCGCA	1 cut(s)	206
NsiI	ATGCAT	1 cut(s)	583
NspV	TTCGAA	1 cut(s)	297
PceI	AGGCCT	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	4 cut(s)	169, 180, 204, 437
Psp6I	CCWGG	2 cut(s)	16, 586
PspGI	CCWGG	2 cut(s)	16, 586
PspN4I	GGNNCC	4 cut(s)	22, 122, 402, 488
PspPI	GGNCC	3 cut(s)	21, 235, 400
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SaqAI	TTAA	2 cut(s)	224, 429
SatI	GCNGC	4 cut(s)	168, 179, 203, 436
Sau96I	GGNCC	3 cut(s)	21, 235, 400
ScrFI	CCNGG	4 cut(s)	18, 141, 195, 588
SduI	GDGCHC	2 cut(s)	135, 538
SetI	ASST	8 cut(s)	11, 54, 151, 189, 234, 285, 417, 457
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	297
SinI	GGWCC	3 cut(s)	21, 235, 400
Sse9I	AATT	2 cut(s)	372, 564
SseBI	AGGCCT	1 cut(s)	333
SsiI	CCGC	5 cut(s)	144, 154, 167, 170, 178
SspMI	CTAG	2 cut(s)	381, 503
StuI	AGGCCT	1 cut(s)	333
StyD4I	CCNGG	4 cut(s)	16, 139, 193, 586
TaqI	TCGA	2 cut(s)	114, 297
TasI	AATT	2 cut(s)	372, 564
TauI	GCSGC	2 cut(s)	170, 181
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	2 cut(s)	224, 429
Tru9I	TTAA	2 cut(s)	224, 429
TscAI	CASTG	1 cut(s)	425
TseI	GCWGC	2 cut(s)	202, 435
TspDTI	ATGAA	4 cut(s)	17, 465, 492, 576
TspRI	CASTG	1 cut(s)	425
VpaK11BI	GGWCC	3 cut(s)	21, 235, 400
XapI	RAATTY	2 cut(s)	372, 564
XbaI	TCTAGA	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	381, 503
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.