RchiOBHm_Chr7g0232291

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
56260840 .. 56264818
3979 bp
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UTR
Exon/CDS
Intron
PRQ20820

Sequence Viewer

Length: 534 bp
ATGGTCGGGAAGCGCCATAATCTTGAGTTTATCAACATCTTTACTGATGATGAGAAGATAAACCAGTATGGGGGAGCATTTGAAGGGATTCCACCCTTCAGAGCCCGAGAGGCTGTGACTGATGCATTAAAGAAGAAGGGCCTCTTCAAAGAAACTAGGATCAAAGAAACTAAGACCAATGAGATGTGTCTTAGAATTTGCTCTAGAAGTAAAGATGTTGTGGAGCCTATTATAAAGCCCCAATGGTACATTAAATGCAGCGATATGGGAAATGAAGCTCTCAATGCTGTCGCCGATGATGAAAATAGGAAGCTGGAGATTATCCCTAGACAGTATACTGCTGGTTGGAAAGATGGCTTCATAACATTCATGATTGGTGTGTCTCGAGGCAACTTTGGTGGGGTCACCGTGTTCCGGCATGGTATGTTGTTTTTGAGGGTGATAACAACGAAGAATTTGGAAGACTTTTTGAGCGATGGGTGGTTCCGAGAAGTGAAGAAGAGGCTCAAGCAAAGTTGCCTCGAGAAACATTAA

Protein Analysis

177

Amino Acids

20.47

Weight (kDa)

9.28

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 233
AccI GTMKAC 1 cut(s) 335
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 2 cut(s) 195, 454
AcuI CTGAAG 1 cut(s) 82
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 70, 414
AgsI TTSAA 2 cut(s) 83, 148
AluBI AGCT 2 cut(s) 278, 313
AluI AGCT 2 cut(s) 278, 313
Alw26I GTCTC 1 cut(s) 387
AlwI GGATC 1 cut(s) 167
Ama87I CYCGRG 3 cut(s) 105, 384, 521
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 258
ApoI RAATTY 2 cut(s) 195, 454
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 397, 451
AvaI CYCGRG 3 cut(s) 105, 384, 521
BanII GRGCYC 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 270
BccI CCATC 2 cut(s) 347, 470
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 3 cut(s) 156, 204, 327
BfoI RGCGCY 1 cut(s) 16
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
BmeT110I CYCGRG 3 cut(s) 105, 384, 521
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 225, 485
BmsI GCATC 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 468
BpmI CTGGAG 1 cut(s) 335
BpuEI CTTGAG 2 cut(s) 44, 491
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 414
Bse1I ACTGG 1 cut(s) 64
BseLI CCNNNNNNNGG 2 cut(s) 70, 414
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 270
BshFI GGCC 1 cut(s) 141
BsiHKCI CYCGRG 3 cut(s) 105, 384, 521
BsiSI CCGG 1 cut(s) 415
BslI CCNNNNNNNGG 2 cut(s) 70, 414
BsmAI GTCTC 1 cut(s) 387
BsnI GGCC 1 cut(s) 141
BsoBI CYCGRG 3 cut(s) 105, 384, 521
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 159
BspANI GGCC 1 cut(s) 141
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 225, 485
BspPI GGATC 1 cut(s) 167
BsrI ACTGG 1 cut(s) 64
BssMI GATC 1 cut(s) 159
BssNAI GTATAC 1 cut(s) 336
Bst1107I GTATAC 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 333, 409
Bst6I CTCTTC 2 cut(s) 149, 494
BstDEI CTNAG 2 cut(s) 171, 191
BstEII GGTNACC 1 cut(s) 403
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 1 cut(s) 162
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 110, 284
BstPI GGTNACC 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 468
BstZ17I GTATAC 1 cut(s) 336
BsuRI GGCC 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 489
CciI TCATGA 1 cut(s) 369
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 247
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 2 cut(s) 370, 419
CviJI RGCY 9 cut(s) 104, 113, 141, 226, 238, 278, 313, 357, 505
CviKI_1 RGCY 9 cut(s) 104, 113, 141, 226, 238, 278, 313, 357, 505
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 171, 191
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 149, 494
EarI CTCTTC 2 cut(s) 149, 494
Eco24I GRGCYC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 82
Eco88I CYCGRG 3 cut(s) 105, 384, 521
Eco91I GGTNACC 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 139
EcoO65I GGTNACC 1 cut(s) 403
EcoT22I ATGCAT 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 106
FaeI CATG 2 cut(s) 373, 422
FaiI YATR 9 cut(s) 18, 69, 233, 266, 336, 362, 371, 420, 425
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 2 cut(s) 369, 418
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 259
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 259
FspBI CTAG 3 cut(s) 156, 204, 327
GlaI GCGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 259
GsuI CTGGAG 1 cut(s) 335
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 415
HhaI GCGC 1 cut(s) 15
Hin1II CATG 2 cut(s) 373, 422
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 1 cut(s) 88
HpaII CCGG 1 cut(s) 415
HphI GGTGA 2 cut(s) 397, 451
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 101, 488
Hpy188III TCNNGA 6 cut(s) 7, 23, 204, 370, 384, 523
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 3 cut(s) 77, 106, 130
HpyCH4III ACNGT 2 cut(s) 333, 409
HpyCH4V TGCA 2 cut(s) 125, 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 284
HpyF3I CTNAG 2 cut(s) 171, 191
Hsp92II CATG 2 cut(s) 373, 422
HspAI GCGC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 159
LmnI GCTCC 2 cut(s) 74, 223
LpnPI CCDG 4 cut(s) 77, 299, 327, 428
Lsp1109I GCAGC 1 cut(s) 270
LweI GCATC 1 cut(s) 112
MaeI CTAG 3 cut(s) 156, 204, 327
MaeIII GTNAC 2 cut(s) 115, 403
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MboII GAAGA 7 cut(s) 67, 136, 145, 463, 473, 508, 511
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 2 cut(s) 195, 454
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 6 cut(s) 103, 152, 380, 429, 495, 530
Mph1103I ATGCAT 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 3 cut(s) 128, 252, 532
MspI CCGG 1 cut(s) 415
MwoI GCNNNNNNNGC 2 cut(s) 110, 284
NdeII GATC 1 cut(s) 159
NlaIII CATG 2 cut(s) 373, 422
NlaIV GGNNCC 2 cut(s) 225, 485
NmuCI GTSAC 2 cut(s) 115, 403
NsiI ATGCAT 1 cut(s) 127
PaeR7I CTCGAG 2 cut(s) 384, 521
PagI TCATGA 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 260
PsiI TTATAA 1 cut(s) 233
PspEI GGTNACC 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 225, 485
PspPI GGNCC 1 cut(s) 139
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 3 cut(s) 128, 252, 532
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 1 cut(s) 159
Sau96I GGNCC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 106
SetI ASST 2 cut(s) 280, 315
SfaNI GCATC 1 cut(s) 112
Sfr274I CTCGAG 2 cut(s) 384, 521
SlaI CTCGAG 2 cut(s) 384, 521
SmlI CTYRAG 4 cut(s) 23, 384, 506, 521
SmoI CTYRAG 4 cut(s) 23, 384, 506, 521
Sse9I AATT 2 cut(s) 195, 454
SspMI CTAG 3 cut(s) 156, 204, 327
TaaI ACNGT 2 cut(s) 333, 409
TaqI TCGA 2 cut(s) 385, 522
TasI AATT 2 cut(s) 195, 454
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 3 cut(s) 128, 252, 532
Tru9I TTAA 3 cut(s) 128, 252, 532
TseFI GTSAC 2 cut(s) 115, 403
TseI GCWGC 1 cut(s) 258
Tsp45I GTSAC 2 cut(s) 115, 403
TspDTI ATGAA 4 cut(s) 288, 315, 349, 358
XapI RAATTY 2 cut(s) 195, 454
XbaI TCTAGA 1 cut(s) 203
XhoI CTCGAG 2 cut(s) 384, 521
XmiI GTMKAC 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 87
XspI CTAG 3 cut(s) 156, 204, 327
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.