Rh7AG425000

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
57097128 .. 57099766
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG425000.1

Sequence Viewer

Length: 1071 bp
ATGGTGAACTGGGATTGTGTGTTGCGGACCGCAATATCTGGTATTGAGGTGGATCCTCCAATTGAAATAAAAGAAAGGACACTACTAGAAGTTTCTGGATATGAGAACCCTGTCGAATTTGGTGTTATGACTTTATTTGCATATCCTGTGGAAGAAGATTTAGGTGAGATAGTTGTAGCAACTACCCGAATAGAGACGATGCTCGGTGATACTGCTATCGCAGTGCATCCTGATGACGAAAGATATAAGCATCTTCATGGAAAACATGCAATCCATCCATTTAATGGAAGAAGGATTCCTATAATTACCCCGGCCCATGATCCTAATGACTTTATGGTTGGGAAGCGCCATAATCTTGAGTTTATCAACATCTTTACTGATGATGGAAAAATAAACCAGTATGGGGGAGCATTTGAAGGGATGCCACGCTTCAGAGCCCGAGAGGCTGTGACTGATGCATTAAAGAAGAAGGGCCTCTTCAAAGAAACTAAGACCAATAAGATGTGTCTTAGAATTTGCTCTAGAAGTAAAGATGTTGTGGAGCCTATGATAAAGCCCCAGTGGTATATTAAATGCAGCGACATGGGAAATGAAGCTCTCAATGCTGTCGCTGATGATGAAAATAGGAAGCTGGAGATTATCCCAAGACAGTATACTGCTGAATGGAAGAGGCCAGATGTGTTGCCATTCAGTTGCCGATGGATTCTCTCAGTGCTAAATGAAGCCATATCCAAAACTGTTATGTCATTGGAATCATTTGAGTTCTCGGATGCAGCAACTGCTGTTTATGCTTGGTGGCAGTACCAGCTGTGTGATGTCTTCATTGAGAATGTCAAACCTTACTTTTCTGGTAATGATCCAAAGTTTGCAACAGAGAGGGGTTTTGCACGGGACAGTCTGTGGGTATGTCTTGACAATGGCCTGAGGTTACTTCATCCTTTCATGCCGTATGTGACAGAAGAACTGTGGCAACGTCTGCCATCGCCAGGGGATTACAAAAGGGCATCATCAATTAGGAGTGCTCTGATAGTGGAGGAGTGTAGGGTCATGGAGTTAGCGGACTCCTGTTAA

Protein Analysis

356

Amino Acids

40.81

Weight (kDa)

5.43

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Anticodon_1 PF08264 233 - 338 2.9e-25 Anticodon-binding domain of tRNA ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 284
AccI GTMKAC 1 cut(s) 653
AciI CCGC 3 cut(s) 25, 30, 1058
AclWI GGATC 4 cut(s) 47, 60, 314, 851
AcsI RAATTY 2 cut(s) 116, 513
AcuI CTGAAG 1 cut(s) 415
AfaI GTAC 1 cut(s) 803
AfiI CCNNNNNNNGG 3 cut(s) 284, 403, 986
AgsI TTSAA 3 cut(s) 65, 416, 481
AjnI CCWGG 1 cut(s) 985
AluBI AGCT 3 cut(s) 596, 631, 808
AluI AGCT 3 cut(s) 596, 631, 808
Alw21I GWGCWC 1 cut(s) 1024
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 4 cut(s) 47, 60, 314, 851
AlwNI CAGNNNCTG 1 cut(s) 779
Ama87I CYCGRG 1 cut(s) 438
AoxI GGCC 4 cut(s) 312, 472, 671, 919
ApeKI GCWGC 2 cut(s) 576, 773
ApoI RAATTY 2 cut(s) 116, 513
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 3 cut(s) 27, 313, 472
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 3 cut(s) 16, 176, 218
AvaI CYCGRG 1 cut(s) 438
AvaII GGWCC 1 cut(s) 27
AxyI CCTNAGG 1 cut(s) 923
BamHI GGATCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 811
Bbv12I GWGCWC 1 cut(s) 1024
BbvI GCAGC 2 cut(s) 588, 785
BccI CCATC 4 cut(s) 282, 377, 693, 988
BceAI ACGGC 1 cut(s) 931
BciT130I CCWGG 1 cut(s) 987
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 2 cut(s) 86, 522
BfoI RGCGCY 1 cut(s) 349
BglI GCCNNNNNGGC 1 cut(s) 443
BisI GCNGC 2 cut(s) 577, 774
BlsI GCNGC 2 cut(s) 578, 775
Bme1390I CCNGG 2 cut(s) 311, 987
Bme18I GGWCC 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 438
BmgT120I GGNCC 3 cut(s) 27, 313, 472
BmiI GGNNCC 2 cut(s) 54, 543
BmrFI CCNGG 2 cut(s) 311, 987
BmrI ACTGGG 2 cut(s) 19, 553
BmsI GCATC 7 cut(s) 189, 235, 259, 411, 445, 760, 1013
BmuI ACTGGG 2 cut(s) 19, 553
BpiI GAAGAC 1 cut(s) 811
BpmI CTGGAG 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 309, 986
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 403, 986
Bse1I ACTGG 3 cut(s) 14, 397, 559
Bse21I CCTNAGG 1 cut(s) 923
BseBI CCWGG 1 cut(s) 987
BseDI CCNNGG 2 cut(s) 309, 986
BseGI GGATG 5 cut(s) 226, 274, 426, 775, 934
BseLI CCNNNNNNNGG 3 cut(s) 284, 403, 986
BseMII CTCAG 2 cut(s) 723, 914
BseNI ACTGG 3 cut(s) 14, 397, 559
BseRI GAGGAG 1 cut(s) 1049
BseXI GCAGC 2 cut(s) 588, 785
BshFI GGCC 4 cut(s) 314, 474, 673, 921
BsiHKAI GWGCWC 1 cut(s) 1024
BsiHKCI CYCGRG 1 cut(s) 438
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 905
BslI CCNNNNNNNGG 3 cut(s) 284, 403, 986
BsmAI GTCTC 1 cut(s) 188
BsmBI CGTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 905
BsnI GGCC 4 cut(s) 314, 474, 673, 921
BsoBI CYCGRG 1 cut(s) 438
Bsp1286I GDGCHC 2 cut(s) 439, 1024
Bsp143I GATC 3 cut(s) 52, 319, 856
BspACI CCGC 3 cut(s) 25, 30, 1058
BspANI GGCC 4 cut(s) 314, 474, 673, 921
BspCNI CTCAG 2 cut(s) 722, 915
BspLI GGNNCC 2 cut(s) 54, 543
BspPI GGATC 4 cut(s) 47, 60, 314, 851
BsrI ACTGG 3 cut(s) 14, 397, 559
BssECI CCNNGG 2 cut(s) 309, 986
BssMI GATC 3 cut(s) 52, 319, 856
BssNAI GTATAC 1 cut(s) 654
Bst1107I GTATAC 1 cut(s) 654
Bst2UI CCWGG 1 cut(s) 987
Bst4CI ACNGT 4 cut(s) 651, 739, 896, 966
Bst6I CTCTTC 2 cut(s) 482, 662
BstAPI GCANNNNNTGC 2 cut(s) 779, 976
BstDEI CTNAG 4 cut(s) 489, 509, 709, 923
BstF5I GGATG 5 cut(s) 226, 274, 426, 775, 934
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 3 cut(s) 55, 322, 859
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 3 cut(s) 52, 319, 856
BstMWI GCNNNNNNNGC 6 cut(s) 443, 602, 779, 788, 805, 976
BstNI CCWGG 1 cut(s) 987
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 2 cut(s) 309, 985
BstV1I GCAGC 2 cut(s) 588, 785
BstV2I GAAGAC 1 cut(s) 811
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BstZ17I GTATAC 1 cut(s) 654
Bsu36I CCTNAGG 1 cut(s) 923
BsuRI GGCC 4 cut(s) 314, 474, 673, 921
BtgZI GCGATG 1 cut(s) 966
BtsCI GGATG 5 cut(s) 226, 274, 426, 775, 934
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 3 cut(s) 228, 566, 717
CaiI CAGNNNCTG 1 cut(s) 779
CfoI GCGC 1 cut(s) 348
Cfr13I GGNCC 3 cut(s) 27, 313, 472
CpoI CGGWCCG 1 cut(s) 27
Csp6I GTAC 1 cut(s) 802
CspI CGGWCCG 1 cut(s) 27
CviAII CATG 6 cut(s) 257, 266, 317, 583, 943, 1048
CviQI GTAC 1 cut(s) 802
DdeI CTNAG 4 cut(s) 489, 509, 709, 923
DpnI GATC 3 cut(s) 54, 321, 858
DpnII GATC 3 cut(s) 52, 319, 856
Eam1104I CTCTTC 2 cut(s) 482, 662
EarI CTCTTC 2 cut(s) 482, 662
Eco24I GRGCYC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 415
Eco81I CCTNAGG 1 cut(s) 923
Eco88I CYCGRG 1 cut(s) 438
EcoO109I RGGNCCY 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 985
EcoT22I ATGCAT 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 439
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 6 cut(s) 260, 269, 320, 586, 946, 1051
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 1 cut(s) 905
FatI CATG 6 cut(s) 256, 265, 316, 582, 942, 1047
FblI GTMKAC 1 cut(s) 653
Fnu4HI GCNGC 2 cut(s) 577, 774
FokI GGATG 5 cut(s) 213, 261, 433, 782, 921
FriOI GRGCYC 1 cut(s) 439
Fsp4HI GCNGC 2 cut(s) 577, 774
FspBI CTAG 2 cut(s) 86, 522
GlaI GCGC 1 cut(s) 347
GluI GCNGC 2 cut(s) 577, 774
GsuI CTGGAG 1 cut(s) 653
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 4 cut(s) 314, 474, 673, 921
HapII CCGG 1 cut(s) 311
HhaI GCGC 1 cut(s) 348
Hin1II CATG 6 cut(s) 260, 269, 320, 586, 946, 1051
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HinfI GANTC 4 cut(s) 295, 703, 752, 1061
HpaII CCGG 1 cut(s) 311
HphI GGTGA 3 cut(s) 16, 176, 218
Hpy166II GTNNAC 2 cut(s) 7, 654
Hpy188I TCNGA 3 cut(s) 434, 769, 1026
Hpy188III TCNNGA 5 cut(s) 96, 230, 356, 522, 911
Hpy8I GTNNAC 2 cut(s) 7, 654
HpyAV CCTTC 3 cut(s) 285, 410, 463
HpyCH4III ACNGT 4 cut(s) 651, 739, 896, 966
HpyCH4IV ACGT 1 cut(s) 973
HpyCH4V TGCA 8 cut(s) 140, 226, 269, 458, 576, 773, 869, 887
HpyF10VI GCNNNNNNNGC 6 cut(s) 443, 602, 779, 788, 805, 976
HpyF3I CTNAG 4 cut(s) 489, 509, 709, 923
HpySE526I ACGT 1 cut(s) 973
Hsp92II CATG 6 cut(s) 260, 269, 320, 586, 946, 1051
HspAI GCGC 1 cut(s) 346
Kzo9I GATC 3 cut(s) 52, 319, 856
LmnI GCTCC 2 cut(s) 407, 541
Lsp1109I GCAGC 2 cut(s) 588, 785
LweI GCATC 7 cut(s) 189, 235, 259, 411, 445, 760, 1013
MaeI CTAG 2 cut(s) 86, 522
MaeII ACGT 1 cut(s) 973
MaeIII GTNAC 3 cut(s) 448, 927, 952
MalI GATC 3 cut(s) 54, 321, 858
MboI GATC 3 cut(s) 52, 319, 856
MboII GAAGA 9 cut(s) 164, 167, 245, 300, 469, 478, 679, 811, 971
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 2 cut(s) 439, 1024
MluCI AATT 5 cut(s) 60, 116, 303, 513, 1011
MlyI GAGTC 1 cut(s) 1055
MnlI CCTC 8 cut(s) 40, 66, 436, 485, 663, 870, 918, 1027
Mph1103I ATGCAT 1 cut(s) 460
MseI TTAA 4 cut(s) 282, 461, 570, 1069
MslI CAYNNNNRTG 2 cut(s) 231, 255
MspA1I CMGCKG 1 cut(s) 808
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 2 cut(s) 311, 987
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 987
MwoI GCNNNNNNNGC 6 cut(s) 443, 602, 779, 788, 805, 976
NciI CCSGG 1 cut(s) 311
NdeII GATC 3 cut(s) 52, 319, 856
NlaIII CATG 6 cut(s) 260, 269, 320, 586, 946, 1051
NlaIV GGNNCC 2 cut(s) 54, 543
NmuCI GTSAC 2 cut(s) 448, 952
NsiI ATGCAT 1 cut(s) 460
NspI RCATGY 1 cut(s) 269
PfeI GAWTC 3 cut(s) 295, 703, 752
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 2 cut(s) 578, 775
PleI GAGTC 1 cut(s) 1055
PpsI GAGTC 1 cut(s) 1055
Psp6I CCWGG 1 cut(s) 985
PspGI CCWGG 1 cut(s) 985
PspN4I GGNNCC 2 cut(s) 54, 543
PspPI GGNCC 3 cut(s) 27, 313, 472
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 808
RsaI GTAC 1 cut(s) 803
RsaNI GTAC 1 cut(s) 802
RseI CAYNNNNRTG 2 cut(s) 231, 255
Rsr2I CGGWCCG 1 cut(s) 27
RsrII CGGWCCG 1 cut(s) 27
SaqAI TTAA 4 cut(s) 282, 461, 570, 1069
SatI GCNGC 2 cut(s) 577, 774
Sau3AI GATC 3 cut(s) 52, 319, 856
Sau96I GGNCC 3 cut(s) 27, 313, 472
SchI GAGTC 1 cut(s) 1055
ScrFI CCNGG 2 cut(s) 311, 987
SduI GDGCHC 2 cut(s) 439, 1024
SetI ASST 8 cut(s) 51, 166, 598, 633, 810, 841, 929, 976
SfaNI GCATC 7 cut(s) 189, 235, 259, 411, 445, 760, 1013
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 2 cut(s) 231, 255
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 5 cut(s) 60, 116, 303, 513, 1011
SsiI CCGC 3 cut(s) 25, 30, 1058
SspMI CTAG 2 cut(s) 86, 522
StyD4I CCNGG 2 cut(s) 309, 985
TaaI ACNGT 4 cut(s) 651, 739, 896, 966
TaiI ACGT 1 cut(s) 976
TaqI TCGA 1 cut(s) 114
TasI AATT 5 cut(s) 60, 116, 303, 513, 1011
TfiI GAWTC 3 cut(s) 295, 703, 752
Tru1I TTAA 4 cut(s) 282, 461, 570, 1069
Tru9I TTAA 4 cut(s) 282, 461, 570, 1069
TscAI CASTG 3 cut(s) 228, 566, 717
TseFI GTSAC 2 cut(s) 448, 952
TseI GCWGC 2 cut(s) 576, 773
Tsp45I GTSAC 2 cut(s) 448, 952
TspDTI ATGAA 7 cut(s) 245, 606, 633, 735, 811, 923, 931
TspRI CASTG 3 cut(s) 228, 566, 717
Van91I CCANNNNNTGG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 2 cut(s) 116, 513
XbaI TCTAGA 1 cut(s) 521
XceI RCATGY 1 cut(s) 269
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 653
XspI CTAG 2 cut(s) 86, 522
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.