Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8187388.1

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 668

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8187388.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 667 bp

atggacaaacactacaatccaagtgctgtggagaagtcaaggtgtgagtggtgggagataaggggcttgtttatggcagatgctaaaagctccaaacctccctttgtgatgttgtatccgcctccgaatgtcacaggtgtgcttcatctaggccatgctctcactgctgctaatggggacactataatacgctggcggcggatgtctggcgacaacaccttgtatcagcctggaatggaccacgctgggatagcaactcaggttgttgtggagaagaagctcatgtccgaaaccgggaaaaccaggcatgatcttggtagagaagagtttgtgaaacaagtttgggagtggaaaaaagaacacggtggcaccattttgcagcagctacgccgtctcggtgcttcattggacttttcgagggagagctttacaatggacgagaaatgctcaaaggctgtggtagaagcctttgtaaggctttataacaaaggacttatctacagggataatcgtatagtcaactgggattgctccctgaaaacagcaatatcagaaattgaggtggactctctggatattcaaggaaggacgttactgaaggttcctggttatgagaacaaggtagagttcggccttttgactacattcgcataccctttggaagaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

222

Amino Acids

25.38

Weight (kDa)

7.02

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	3 cut(s)	119, 196, 199
AcuI	CTGAAG	1 cut(s)	617
AfiI	CCNNNNNNNGG	2 cut(s)	294, 474
AgsI	TTSAA	1 cut(s)	581
AjnI	CCWGG	3 cut(s)	229, 302, 604
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	4 cut(s)	90, 280, 385, 426
AluI	AGCT	4 cut(s)	90, 280, 385, 426
Alw26I	GTCTC	1 cut(s)	398
AoxI	GGCC	2 cut(s)	151, 631
ApeKI	GCWGC	3 cut(s)	167, 379, 382
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	368
BbvI	GCAGC	3 cut(s)	154, 391, 394
BceAI	ACGGC	1 cut(s)	375
BciT130I	CCWGG	3 cut(s)	231, 304, 606
BciVI	GTATCC	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	499
BfuI	GTATCC	1 cut(s)	126
BisI	GCNGC	4 cut(s)	168, 197, 380, 383
BlsI	GCNGC	4 cut(s)	169, 198, 381, 384
Bme1390I	CCNGG	4 cut(s)	231, 295, 304, 606
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	370, 603
BmrFI	CCNGG	4 cut(s)	231, 295, 304, 606
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	532
BplI	GAGNNNNNCTC	4 cut(s)	431, 463, 551, 583
BpuMI	CCSGG	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 474
Bse1I	ACTGG	1 cut(s)	527
BseBI	CCWGG	3 cut(s)	231, 304, 606
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	294, 474
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	527
BseXI	GCAGC	3 cut(s)	154, 391, 394
BseYI	CCCAGC	1 cut(s)	245
BshFI	GGCC	2 cut(s)	153, 633
BshNI	GGYRCC	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	294, 474
BsmAI	GTCTC	1 cut(s)	398
BsmBI	CGTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	153, 633
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	3 cut(s)	119, 196, 199
BspANI	GGCC	2 cut(s)	153, 633
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	370, 603
BspT107I	GGYRCC	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	527
BssMI	GATC	1 cut(s)	310
Bst2UI	CCWGG	3 cut(s)	231, 304, 606
Bst4CI	ACNGT	1 cut(s)	365
Bst6I	CTCTTC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	258
BstENI	CCTNNNNNAGG	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 251
BstNI	CCWGG	3 cut(s)	231, 304, 606
BstSCI	CCNGG	4 cut(s)	229, 293, 302, 604
BstSFI	CTRYAG	1 cut(s)	499
BstV1I	GCAGC	3 cut(s)	154, 391, 394
BsuI	GTATCC	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	153, 633
BtsCI	GGATG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	238
CspCI	CAANNNNNGTGG	4 cut(s)	9, 44, 438, 473
CviAII	CATG	3 cut(s)	155, 283, 308
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
EciI	GGCGGA	2 cut(s)	108, 214
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	617
EcoNI	CCTNNNNNAGG	1 cut(s)	472
EcoRII	CCWGG	3 cut(s)	229, 302, 604
Esp3I	CGTCTC	1 cut(s)	398
FaeI	CATG	3 cut(s)	158, 286, 311
FaiI	YATR	9 cut(s)	74, 156, 185, 284, 309, 483, 515, 612, 652
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	3 cut(s)	154, 282, 307
Fnu4HI	GCNGC	4 cut(s)	168, 197, 380, 383
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	4 cut(s)	168, 197, 380, 383
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	4 cut(s)	168, 197, 380, 383
GsaI	CCCAGC	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	153, 633
HapII	CCGG	1 cut(s)	294
Hin1II	CATG	3 cut(s)	158, 286, 311
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	1 cut(s)	566
HpaII	CCGG	1 cut(s)	294
Hpy166II	GTNNAC	2 cut(s)	520, 565
Hpy188I	TCNGA	3 cut(s)	126, 289, 553
Hpy188III	TCNNGA	1 cut(s)	572
Hpy8I	GTNNAC	2 cut(s)	520, 565
HpyAV	CCTTC	2 cut(s)	579, 592
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	1 cut(s)	590
HpyCH4V	TGCA	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 251
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	590
Hsp92II	CATG	3 cut(s)	158, 286, 311
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	2 cut(s)	95, 536
Lsp1109I	GCAGC	3 cut(s)	154, 391, 394
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	590
MaeIII	GTNAC	2 cut(s)	130, 591
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	2 cut(s)	286, 335
MluCI	AATT	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	560
MnlI	CCTC	4 cut(s)	108, 132, 411, 553
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	4 cut(s)	231, 295, 304, 606
MvaI	CCWGG	3 cut(s)	231, 304, 606
MwoI	GCNNNNNNNGC	2 cut(s)	164, 251
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	3 cut(s)	158, 286, 311
NlaIV	GGNNCC	2 cut(s)	370, 603
NmuCI	GTSAC	1 cut(s)	130
OliI	CACNNNNGTG	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	169, 198, 381, 384
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PsiI	TTATAA	1 cut(s)	483
Psp6I	CCWGG	3 cut(s)	229, 302, 604
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	3 cut(s)	229, 302, 604
PspN4I	GGNNCC	2 cut(s)	370, 603
PspPI	GGNCC	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	137
SatI	GCNGC	4 cut(s)	168, 197, 380, 383
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	4 cut(s)	231, 295, 304, 606
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	555
SsiI	CCGC	3 cut(s)	119, 196, 199
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	4 cut(s)	229, 293, 302, 604
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	1 cut(s)	416
TasI	AATT	1 cut(s)	555
TauI	GCSGC	1 cut(s)	199
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	3 cut(s)	167, 379, 382
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	134, 393
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	472
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.