Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002042.1

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

59261 .. 60135

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002042.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgtgtcttagaattttctctagaagtaaagatgttgaggagcctatgataaagcccagtggtacattaaatgcagcgatatgggaaatgaagctctcaatgctgtcgctgatgatgaaaataggaagctggagattatcccaagacagtatactgctgaatggaagagatggcttcgtaacattagtgattggtgtgtctcgaggcaactttggtggagtcacagtgttctggcacggaagtgaggaagaggctcaagcattggctgatcaaaaatatgagggaaagaagtttcgattagaacaggactcagatgtgcttgagaggtggttttcgtttggtcttttcccattgtcggtattgggctggccggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

125

Amino Acids

14.16

Weight (kDa)

5.43

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	12
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	355
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	2 cut(s)	94, 129
AluI	AGCT	2 cut(s)	94, 129
Alw26I	GTCTC	1 cut(s)	204
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	12
AvaI	CYCGRG	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	21
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	42
BmrI	ACTGGG	1 cut(s)	51
BmuI	ACTGGG	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	151
BpuEI	CTTGAG	2 cut(s)	240, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	86
BshFI	GGCC	1 cut(s)	370
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	370
BsoBI	CYCGRG	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	268
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	268
BssNAI	GTATAC	1 cut(s)	152
Bst1107I	GTATAC	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	149, 226
Bst6I	CTCTTC	2 cut(s)	160, 243
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	2 cut(s)	8, 310
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	86
BstZ17I	GTATAC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	370
BtsIMutI	CAGTG	2 cut(s)	64, 231
Cac8I	GCNNGC	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	63
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviJI	RGCY	9 cut(s)	43, 55, 94, 129, 174, 254, 266, 366, 370
CviKI_1	RGCY	9 cut(s)	43, 55, 94, 129, 174, 254, 266, 366, 370
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	2 cut(s)	8, 310
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
EaeI	YGGCCR	1 cut(s)	368
Eam1104I	CTCTTC	2 cut(s)	160, 243
EarI	CTCTTC	2 cut(s)	160, 243
Eco88I	CYCGRG	1 cut(s)	201
FaiI	YATR	4 cut(s)	47, 82, 152, 279
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	1 cut(s)	371
HinfI	GANTC	2 cut(s)	219, 308
HpaII	CCGG	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	21, 201
Hpy8I	GTNNAC	1 cut(s)	152
HpyCH4III	ACNGT	2 cut(s)	149, 226
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	2 cut(s)	8, 310
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	70, 115, 217, 290, 352
Lsp1109I	GCAGC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	178, 220
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	2 cut(s)	177, 260
MluCI	AATT	1 cut(s)	12
MlyI	GAGTC	2 cut(s)	228, 302
MnlI	CCTC	6 cut(s)	31, 197, 238, 244, 274, 318
MseI	TTAA	2 cut(s)	68, 376
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	1 cut(s)	268
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	220
OliI	CACNNNNGTG	1 cut(s)	240
PaeR7I	CTCGAG	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	2 cut(s)	227, 302
PpsI	GAGTC	2 cut(s)	227, 302
PspN4I	GGNNCC	1 cut(s)	42
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	68, 376
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	268
SchI	GAGTC	2 cut(s)	228, 302
SetI	ASST	3 cut(s)	96, 131, 329
Sfr274I	CTCGAG	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	3 cut(s)	201, 255, 320
SmoI	CTYRAG	3 cut(s)	201, 255, 320
Sse9I	AATT	1 cut(s)	12
SspMI	CTAG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	149, 226
TaqI	TCGA	2 cut(s)	202, 295
TasI	AATT	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	68, 376
Tru9I	TTAA	2 cut(s)	68, 376
TscAI	CASTG	2 cut(s)	64, 231
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	104, 131
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	2 cut(s)	64, 231
XapI	RAATTY	1 cut(s)	12
XbaI	TCTAGA	1 cut(s)	20
XhoI	CTCGAG	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.