Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

10882841 .. 10884196

Gene Structure 1356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG126000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAAGAAAGAATGCATCCCTTTAATCAGGGCCTCTTCAAAGAAACTAAGACCAATGAGATGTGTCTTAGAATTTGCTCTAGAAGTAAAGATGTTGTGGAGCCTATCATAAAGCCTGAGCGTATACTGCTGAATGGAAGAGATGACTTCGTAACATTAGTGATTGGTGTGTCTCGAGACAACTTTGGTGGAGTCACCGTGTTCTGGCACGGAAGTGAGGAAGAGGCTCAAGCATTGGCTGATCAAAAATATGAGGGAAAGAAGTTTCGATTAGAACAGGACTCAGATGTGCTTGACAGGTGGTTTTCGTCTGGTCTTTTCCCATTGTCGGTATTGGGCTGGCCGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

116

Amino Acids

13.38

Weight (kDa)

5.06

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	72 - 116	1.5e-07	tRNA synthetases class I (I, L, M and V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	341
AcsI	RAATTY	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	204, 328
AgsI	TTSAA	1 cut(s)	40
AleI	CACNNNNGTG	1 cut(s)	213
Alw26I	GTCTC	2 cut(s)	171, 177
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	2 cut(s)	31, 341
ApoI	RAATTY	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	174
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	171, 177
BfaI	CTAG	1 cut(s)	81
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 328
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	2 cut(s)	204, 328
BseMII	CTCAG	2 cut(s)	108, 297
BshFI	GGCC	2 cut(s)	33, 343
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	204, 328
BsmAI	GTCTC	2 cut(s)	171, 177
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	33, 343
BsoBI	CYCGRG	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	241
BspANI	GGCC	2 cut(s)	33, 343
BspCNI	CTCAG	2 cut(s)	109, 296
BspLI	GGNNCC	1 cut(s)	102
BssMI	GATC	1 cut(s)	241
BssNAI	GTATAC	1 cut(s)	125
Bst1107I	GTATAC	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	3 cut(s)	41, 133, 216
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	4 cut(s)	48, 68, 117, 283
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	2 cut(s)	171, 177
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstZ17I	GTATAC	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	33, 343
BtsCI	GGATG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	31
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviJI	RGCY	7 cut(s)	33, 103, 115, 227, 239, 339, 343
CviKI_1	RGCY	7 cut(s)	33, 103, 115, 227, 239, 339, 343
DdeI	CTNAG	4 cut(s)	48, 68, 117, 283
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	341
Eam1104I	CTCTTC	3 cut(s)	41, 133, 216
EarI	CTCTTC	3 cut(s)	41, 133, 216
Eco88I	CYCGRG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	18
FaiI	YATR	3 cut(s)	110, 125, 252
FbaI	TGATCA	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	124
FokI	GGATG	1 cut(s)	3
FspBI	CTAG	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	33, 343
HapII	CCGG	1 cut(s)	344
HinfI	GANTC	2 cut(s)	192, 281
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	3 cut(s)	81, 174, 176
Hpy8I	GTNNAC	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	4 cut(s)	48, 68, 117, 283
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	7 cut(s)	14, 129, 190, 263, 283, 297, 325
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	151, 193
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	4 cut(s)	17, 28, 150, 233
MluCI	AATT	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	201, 275
MnlI	CCTC	4 cut(s)	44, 211, 217, 247
Mph1103I	ATGCAT	1 cut(s)	18
MseI	TTAA	2 cut(s)	24, 349
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	193
NsiI	ATGCAT	1 cut(s)	18
OliI	CACNNNNGTG	1 cut(s)	213
PaeR7I	CTCGAG	1 cut(s)	174
PctI	GAATGC	1 cut(s)	18
PleI	GAGTC	2 cut(s)	200, 275
PpsI	GAGTC	2 cut(s)	200, 275
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	24, 349
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	2 cut(s)	201, 275
SetI	ASST	1 cut(s)	302
SfaNI	GCATC	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	174
SlaI	CTCGAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	174, 228
SmoI	CTYRAG	2 cut(s)	174, 228
Sse9I	AATT	1 cut(s)	72
SspMI	CTAG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	175, 268
TasI	AATT	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	24, 349
Tru9I	TTAA	2 cut(s)	24, 349
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspGWI	ACGGA	1 cut(s)	225
XapI	RAATTY	1 cut(s)	72
XbaI	TCTAGA	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	124
XspI	CTAG	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.