Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

36436777 .. 36439042

Gene Structure 2266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19550

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCCACGCTTCAGAGCCCAAGAGGCTGTGACTGATTCATTAAAGAAATCTGGCCTCTTCAAAGAAACTAAGACCAATGAGATGTGTCTTAGAATTTGCTCTAGAAGTAAAGATGTTGTGGAGCCTATGATAAAGCCCCAGTGGTATGTTCAATGCAGCGATATGGGAAATGAAGCTCTCAATGCTCTCGCTGTGATGAAAATAGGAAGCTGGAGATTATCCCAAGCCAGTATACTGCTGATTGGAAGAGTAAATTTATGGCTTCATAACATTCGTGATTGGTGTGTCTCGAGGCAACTTTGGTGGGGTCACCGTGTTCCGGCATGGTATGTTGTTTTTGAGGGTGATAACAATGAAGAATTTGGAAGATTTTTTGAGCGATGGGTGGTTGCGAGAAGTGAGGAAGAGGCTCAAGCATTGGCCGATCAAAAATATGAGGGAAAGAAGTTTCGATTAGAACAGGACTCAGATGTGCTTGACAGGTGGTTTTCGTCTGGTCTTTTCCCATTGTCTGTATTGGGCTGGCCGGATGATACAAAAGATTTCAGAACTTTTTATCCAAATTCAGTTGTTGAAACTGTGCACGACATTCTCTTTTTCTGGGTTGCTCGTATGGTAATGCTTGGAATTATTTTGGGTGGTAATGTTCCCTTTAGAAAGGTATACTTACACCCAATGGTTCGTGATGCGCACGGGCGTAAAATGTCAAAGGGCTTGGGGAATGTCATTGACCTTGTAGACATAATAAATGGTATCACCCTAGAGTGTCTACATGATAGACTTTTAGAGGGAAATCTGGACCGCAAGGAATTAGATAAGGTCAGAGAGGGGCAATTAAAGGACTTCCCTGATGGTATTGCTGAGTGTGGTGCGGATGCTCTGCGGTTTTCTCTTATCTCGTACACTGCTCAGACCGATAAGATAAATCTGGTTATCCAAAGGGTTGTGGTTACCGTCAGTGGTGTAACAAACTTTGGAATGCAGTACGGTTTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

332

Amino Acids

38.16

Weight (kDa)

6.62

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	35 - 310	5.4e-65	tRNA synthetases class I (I, L, M and V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	690
AccI	GTMKAC	4 cut(s)	232, 663, 738, 769
AciI	CCGC	3 cut(s)	802, 872, 883
AcoI	YGGCCR	2 cut(s)	420, 524
AcsI	RAATTY	4 cut(s)	93, 253, 359, 562
AfaI	GTAC	2 cut(s)	902, 986
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	3 cut(s)	61, 152, 575
AloI	GAACNNNNNNTCC	2 cut(s)	541, 573
AluBI	AGCT	2 cut(s)	176, 210
AluI	AGCT	2 cut(s)	176, 210
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	1 cut(s)	292
Alw44I	GTGCAC	1 cut(s)	581
Ama87I	CYCGRG	1 cut(s)	289
AoxI	GGCC	3 cut(s)	52, 420, 524
ApaLI	GTGCAC	1 cut(s)	581
ApeKI	GCWGC	1 cut(s)	156
ApoI	RAATTY	4 cut(s)	93, 253, 359, 562
AspLEI	GCGC	1 cut(s)	691
AspS9I	GGNCC	1 cut(s)	799
AsuHPI	GGTGA	3 cut(s)	302, 356, 748
AvaI	CYCGRG	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	799
BaeGI	GKGCMC	1 cut(s)	585
BanII	GRGCYC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	2 cut(s)	375, 845
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	102, 761
BglI	GCCNNNNNGGC	1 cut(s)	23
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	799
BmeT110I	CYCGRG	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	799
BmiI	GGNNCC	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	2 cut(s)	676, 865
BmuI	ACTGGG	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	2 cut(s)	139, 228
BseGI	GGATG	2 cut(s)	535, 880
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMII	CTCAG	3 cut(s)	480, 852, 923
BseNI	ACTGG	2 cut(s)	139, 228
BseSI	GKGCMC	1 cut(s)	585
BseXI	GCAGC	1 cut(s)	168
BshFI	GGCC	3 cut(s)	54, 422, 526
BsiHKAI	GWGCWC	1 cut(s)	585
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	320, 527
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	984
BsnI	GGCC	3 cut(s)	54, 422, 526
BsoBI	CYCGRG	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	19, 585
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	3 cut(s)	802, 872, 883
BspANI	GGCC	3 cut(s)	54, 422, 526
BspCNI	CTCAG	3 cut(s)	479, 853, 922
BspLI	GGNNCC	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	139, 228
BssMI	GATC	1 cut(s)	424
BssNAI	GTATAC	2 cut(s)	233, 664
Bst1107I	GTATAC	2 cut(s)	233, 664
Bst4CI	ACNGT	4 cut(s)	314, 580, 955, 989
Bst6I	CTCTTC	3 cut(s)	62, 241, 399
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	5 cut(s)	69, 89, 466, 861, 909
BstEII	GGTNACC	2 cut(s)	308, 949
BstF5I	GGATG	2 cut(s)	535, 880
BstHHI	GCGC	1 cut(s)	691
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 182
BstPI	GGTNACC	2 cut(s)	308, 949
BstSLI	GKGCMC	1 cut(s)	585
BstV1I	GCAGC	1 cut(s)	168
BstZ17I	GTATAC	2 cut(s)	233, 664
BsuRI	GGCC	3 cut(s)	54, 422, 526
BtgZI	GCGATG	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	535, 880
BtsI	GCAGTG	1 cut(s)	903
BtsIMutI	CAGTG	3 cut(s)	146, 903, 964
Cac8I	GCNNGC	1 cut(s)	524
CfoI	GCGC	1 cut(s)	691
Cfr13I	GGNCC	1 cut(s)	799
Csp6I	GTAC	2 cut(s)	901, 985
CspCI	CAANNNNNGTGG	2 cut(s)	284, 319
CviAII	CATG	2 cut(s)	324, 773
CviQI	GTAC	2 cut(s)	901, 985
DdeI	CTNAG	5 cut(s)	69, 89, 466, 861, 909
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
EaeI	YGGCCR	2 cut(s)	420, 524
Eam1104I	CTCTTC	3 cut(s)	62, 241, 399
EarI	CTCTTC	3 cut(s)	62, 241, 399
Eco24I	GRGCYC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	799
Eco88I	CYCGRG	1 cut(s)	289
Eco91I	GGTNACC	2 cut(s)	308, 949
EcoO65I	GGTNACC	2 cut(s)	308, 949
EcoT38I	GRGCYC	1 cut(s)	19
FaeI	CATG	2 cut(s)	327, 776
FalI	AAGNNNNNCTT	2 cut(s)	650, 682
FatI	CATG	2 cut(s)	323, 772
FblI	GTMKAC	4 cut(s)	232, 663, 738, 769
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	2 cut(s)	542, 887
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	157
FspAI	RTGCGCAY	1 cut(s)	690
FspBI	CTAG	2 cut(s)	102, 761
FspI	TGCGCA	1 cut(s)	690
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	232
HaeIII	GGCC	3 cut(s)	54, 422, 526
HapII	CCGG	2 cut(s)	320, 527
HhaI	GCGC	1 cut(s)	691
Hin1II	CATG	2 cut(s)	327, 776
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HinfI	GANTC	2 cut(s)	35, 464
HpaII	CCGG	2 cut(s)	320, 527
HphI	GGTGA	3 cut(s)	302, 356, 748
Hpy166II	GTNNAC	6 cut(s)	233, 583, 664, 739, 770, 903
Hpy188I	TCNGA	5 cut(s)	14, 469, 548, 824, 912
Hpy188III	TCNNGA	5 cut(s)	102, 275, 289, 683, 797
Hpy8I	GTNNAC	6 cut(s)	233, 583, 664, 739, 770, 903
HpyCH4III	ACNGT	4 cut(s)	314, 580, 955, 989
HpyCH4V	TGCA	3 cut(s)	156, 583, 982
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 182
HpyF3I	CTNAG	5 cut(s)	69, 89, 466, 861, 909
Hsp92II	CATG	2 cut(s)	327, 776
HspAI	GCGC	1 cut(s)	689
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	2 cut(s)	676, 865
MaeI	CTAG	2 cut(s)	102, 761
MaeIII	GTNAC	4 cut(s)	28, 308, 949, 964
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	5 cut(s)	49, 258, 368, 378, 416
MhlI	GDGCHC	2 cut(s)	19, 585
MluCI	AATT	7 cut(s)	93, 253, 359, 562, 627, 809, 833
MlyI	GAGTC	1 cut(s)	458
MnlI	CCTC	9 cut(s)	16, 65, 285, 334, 394, 400, 430, 781, 820
MseI	TTAA	2 cut(s)	41, 836
MspI	CCGG	2 cut(s)	320, 527
Mva1269I	GAATGC	1 cut(s)	984
MwoI	GCNNNNNNNGC	2 cut(s)	23, 182
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	2 cut(s)	327, 776
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	2 cut(s)	28, 308
NsbI	TGCGCA	1 cut(s)	690
PaeR7I	CTCGAG	1 cut(s)	289
PctI	GAATGC	1 cut(s)	984
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	158
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
PspEI	GGTNACC	2 cut(s)	308, 949
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	799
RsaI	GTAC	2 cut(s)	902, 986
RsaNI	GTAC	2 cut(s)	901, 985
SaqAI	TTAA	2 cut(s)	41, 836
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	1 cut(s)	799
SchI	GAGTC	1 cut(s)	458
SduI	GDGCHC	2 cut(s)	19, 585
SetI	ASST	6 cut(s)	178, 212, 485, 663, 735, 822
SfaNI	GCATC	2 cut(s)	676, 865
Sfr274I	CTCGAG	1 cut(s)	289
SinI	GGWCC	1 cut(s)	799
SlaI	CTCGAG	1 cut(s)	289
SmlI	CTYRAG	2 cut(s)	289, 411
SmoI	CTYRAG	2 cut(s)	289, 411
Sse9I	AATT	7 cut(s)	93, 253, 359, 562, 627, 809, 833
SsiI	CCGC	3 cut(s)	802, 872, 883
SspMI	CTAG	2 cut(s)	102, 761
TaaI	ACNGT	4 cut(s)	314, 580, 955, 989
TaqI	TCGA	2 cut(s)	290, 451
TaqII	GACCGA	1 cut(s)	929
TasI	AATT	7 cut(s)	93, 253, 359, 562, 627, 809, 833
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	41, 836
Tru9I	TTAA	2 cut(s)	41, 836
TscAI	CASTG	3 cut(s)	146, 910, 964
TseFI	GTSAC	2 cut(s)	28, 308
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	2 cut(s)	28, 308
TspDTI	ATGAA	5 cut(s)	27, 186, 212, 254, 369
TspRI	CASTG	3 cut(s)	146, 910, 964
VneI	GTGCAC	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	799
XapI	RAATTY	4 cut(s)	93, 253, 359, 562
XbaI	TCTAGA	1 cut(s)	101
XhoI	CTCGAG	1 cut(s)	289
XmiI	GTMKAC	4 cut(s)	232, 663, 738, 769
XspI	CTAG	2 cut(s)	102, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.