Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

3492925 .. 3493176

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG050800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGATAGAGTGCTGGAAGAATGAAGAAGTGGAGACTCAGATGGATAATGTTATTATTTCGGTTGTGAATTCTATACGCTCACTTGCAAAAGAAGGTCGTGAACGACGAGCAGCATTTGTGCTTAGTGGGATAAGAGAAGAGAGGGAGTTGATGTACAGCCAGTGTGCAATCATTGAAAAGTTAGCGAATGTGTCACCGTTGGCGATAATCCATGAAGAGGGTGCTGCTCCAACTGGATGTGCACTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

83

Amino Acids

9.23

Weight (kDa)

4.94

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	67
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	26
Alw44I	GTGCAC	1 cut(s)	240
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	110, 224
ApoI	RAATTY	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	186
BaeGI	GKGCMC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	122, 211
BccI	CCATC	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	111, 225
BlsI	GCNGC	2 cut(s)	112, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	2 cut(s)	160, 238
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	160, 238
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	122, 211
BsiHKAI	GWGCWC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp1407I	TGTACA	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	49
BsrGI	TGTACA	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	160, 238
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	2 cut(s)	132, 210
BstAUI	TGTACA	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	36, 122
BstF5I	GGATG	1 cut(s)	242
BstMAI	GTCTC	1 cut(s)	26
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	122, 211
BtsCI	GGATG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	1 cut(s)	159
CviKI_1	RGCY	1 cut(s)	159
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	36, 122
Eam1104I	CTCTTC	2 cut(s)	132, 210
EarI	CTCTTC	2 cut(s)	132, 210
EcoRI	GAATTC	1 cut(s)	67
FaeI	CATG	1 cut(s)	215
FaiI	YATR	2 cut(s)	74, 213
FatI	CATG	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	111, 225
Fsp4HI	GCNGC	2 cut(s)	111, 225
GluI	GCNGC	2 cut(s)	111, 225
Hin1II	CATG	1 cut(s)	215
HinfI	GANTC	1 cut(s)	34
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	101, 242
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	2 cut(s)	101, 242
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	3 cut(s)	86, 167, 242
HpyF3I	CTNAG	2 cut(s)	36, 122
Hsp92II	CATG	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	2 cut(s)	173, 219
Lsp1109I	GCAGC	2 cut(s)	122, 211
MaeIII	GTNAC	1 cut(s)	192
MboII	GAAGA	4 cut(s)	28, 35, 149, 227
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	2 cut(s)	135, 211
NlaIII	CATG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	112, 226
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SatI	GCNGC	2 cut(s)	111, 225
SchI	GAGTC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	1 cut(s)	97
SgeI	CNNG	7 cut(s)	25, 95, 110, 119, 172, 224, 246
Sse9I	AATT	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	198
TasI	AATT	1 cut(s)	67
TatI	WGTACW	1 cut(s)	153
TscAI	CASTG	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	2 cut(s)	110, 224
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	2 cut(s)	36, 228
TspRI	CASTG	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	240
XapI	RAATTY	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.