Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8457289.1

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1358

Gene Structure 1358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8457289.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atggacgtcacagtcatggacgacaattcatcgaaggagaagaagaagaaaaaggaggaaaaggcaagatttcacgaactgaaaaagcaaaaggctttagagaaagcttccaagcttcaggcacaaaaagctaatcctacgaacagtgaaaagaagaaacttcgcaacgaggacgccggcgacaatgccaaccctccgaccccagtcggcgagaagaaacgattgtctcctcaaatggctaaacactacagtccaagtgatgtagagatggcgtggtacccgttttgggagacacaaggctactttgtcgcagatgctaaaagtcacaaacctccatttgccttggacactttgattcgtcatcggagaatgtcaggttataataccttgtggtctcctggacttgaccatgctggcatagcaacacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

143

Amino Acids

16.31

Weight (kDa)

9.59

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AasI	GACNNNNNNGTC	1 cut(s)	11
AatII	GACGTC	1 cut(s)	9
Acc65I	GGTACC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	2 cut(s)	6, 174
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	3 cut(s)	107, 115, 131
AluI	AGCT	3 cut(s)	107, 115, 131
Alw26I	GTCTC	3 cut(s)	231, 284, 399
Asp718I	GGTACC	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	276
BccI	CCATC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	399
BcoDI	GTCTC	3 cut(s)	231, 284, 399
BfmI	CTRYAG	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	399
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	399
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	304
BmuI	ACTGGG	1 cut(s)	197
BoxI	GACNNNNGTC	1 cut(s)	203
BsaHI	GRCGYC	2 cut(s)	6, 174
BsaI	GGTCTC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	3 cut(s)	231, 284, 399
Bso31I	GGTCTC	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	342
BssNI	GRCGYC	2 cut(s)	6, 174
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	3 cut(s)	13, 146, 251
BstACI	GRCGYC	2 cut(s)	6, 174
BstC8I	GCNNGC	2 cut(s)	178, 415
BstMAI	GTCTC	3 cut(s)	231, 284, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 419
BstNI	CCWGG	1 cut(s)	399
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	178, 415
Cfr10I	RCCGGY	1 cut(s)	176
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	2 cut(s)	16, 410
CviJI	RGCY	6 cut(s)	95, 107, 115, 131, 239, 300
CviKI_1	RGCY	6 cut(s)	95, 107, 115, 131, 239, 300
CviQI	GTAC	1 cut(s)	277
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	2 cut(s)	19, 413
FaiI	YATR	4 cut(s)	17, 381, 411, 419
FatI	CATG	2 cut(s)	15, 409
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	1 cut(s)	182
Hin1I	GRCGYC	2 cut(s)	6, 174
Hin1II	CATG	2 cut(s)	19, 413
HindIII	AAGCTT	2 cut(s)	105, 113
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	1 cut(s)	177
Hpy188I	TCNGA	2 cut(s)	198, 366
Hpy188III	TCNNGA	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	3 cut(s)	13, 146, 251
HpyCH4IV	ACGT	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 419
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	2 cut(s)	6, 174
Hsp92II	CATG	2 cut(s)	19, 413
KpnI	GGTACC	1 cut(s)	280
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
LpnPI	CCDG	7 cut(s)	104, 190, 216, 360, 384, 399, 411
LweI	GCATC	1 cut(s)	304
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	7, 323
MboII	GAAGA	5 cut(s)	52, 55, 58, 166, 226
MluCI	AATT	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	5 cut(s)	49, 163, 204, 240, 342
MreI	CGCCGGCG	1 cut(s)	176
MroNI	GCCGGC	1 cut(s)	176
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	128, 419
NaeI	GCCGGC	1 cut(s)	178
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	2 cut(s)	19, 413
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	2 cut(s)	7, 323
PdiI	GCCGGC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	355
PfoI	TCCNGGA	1 cut(s)	397
PshAI	GACNNNNGTC	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	278
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	399
SetI	ASST	7 cut(s)	9, 109, 117, 133, 334, 379, 389
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	247
SgrAI	CRCCGGYG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	13, 146, 251
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	25
TfiI	GAWTC	1 cut(s)	355
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	2 cut(s)	7, 323
Tsp45I	GTSAC	2 cut(s)	7, 323
TspDTI	ATGAA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	151
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.