Rh7BG400000

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
44386747 .. 44387663
917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG400000.1

Sequence Viewer

Length: 486 bp
ATGTCTCTTATTGAGTTGGTTGTGAAGTCTCTCCGATCTCTTGCCCAGGGAAGTCGTGAAAGGAGACAAGGTTATGTGCTTTGTAGAGAAAGTTTGGGAAAGCGCGACCAGGAGGCAATATGCAATCATCAACTGGAAATTAAAACGCTAGCTAATCTGTCGTCTTTGGCGGTAATCGATGAGAACAATGCTGCTCCAACTAGATGTGCGGTGTCTGTTGTGAATGAAAAGCTTTCTGTTTATCTCAAGCTTCATGCATCTGGTTCTCCAGAAACAGATCTTGAAAAGATCCGGAAAAAGATTGAATACATTACATTGGAACATGAGAGACTATCGAAGAAATTGAATATGCTTGCTGCTAATGAAGATAAGGTCCCCGAGAAGGTTACAAGAGATACTGCTGACAAGCTGGAATCCCTTGAGAAGGAAAAGTTGTCTCTTGAAGAGTCGATTCAACTTATGGAAACACAGGAGATGAACTTTTAA

Protein Analysis

161

Amino Acids

18.28

Weight (kDa)

6.0

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 105
AccIII TCCGGA 1 cut(s) 291
AciI CCGC 2 cut(s) 170, 209
AclWI GGATC 1 cut(s) 283
AfiI CCNNNNNNNGG 2 cut(s) 382, 424
AgsI TTSAA 5 cut(s) 284, 305, 346, 443, 455
AjnI CCWGG 2 cut(s) 45, 108
AluBI AGCT 4 cut(s) 152, 232, 250, 409
AluI AGCT 4 cut(s) 152, 232, 250, 409
Alw26I GTCTC 5 cut(s) 9, 33, 58, 322, 441
AlwI GGATC 1 cut(s) 283
Ama87I CYCGRG 1 cut(s) 377
Aor13HI TCCGGA 1 cut(s) 291
ApeKI GCWGC 2 cut(s) 191, 356
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 373
AsuNHI GCTAGC 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 1 cut(s) 373
BbvI GCAGC 2 cut(s) 178, 343
BciT130I CCWGG 2 cut(s) 47, 110
BcoDI GTCTC 5 cut(s) 9, 33, 58, 322, 441
BfaI CTAG 2 cut(s) 149, 201
BglII AGATCT 1 cut(s) 277
BisI GCNGC 2 cut(s) 192, 357
BlsI GCNGC 2 cut(s) 193, 358
Bme1390I CCNGG 2 cut(s) 47, 110
Bme18I GGWCC 1 cut(s) 373
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 2 cut(s) 47, 110
BmsI GCATC 1 cut(s) 266
BmtI GCTAGC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 252
BpuEI CTTGAG 2 cut(s) 230, 440
Bsa29I ATCGAT 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 45, 46
BsaWI WCCGGW 1 cut(s) 291
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 424
Bse1I ACTGG 1 cut(s) 138
BseAI TCCGGA 1 cut(s) 291
BseBI CCWGG 2 cut(s) 47, 110
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 45, 46
BseLI CCNNNNNNNGG 2 cut(s) 382, 424
BseNI ACTGG 1 cut(s) 138
BseXI GCAGC 2 cut(s) 178, 343
Bsh1236I CGCG 1 cut(s) 105
BshVI ATCGAT 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 1 cut(s) 292
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 382, 424
BsmAI GTCTC 5 cut(s) 9, 33, 58, 322, 441
BsmFI GGGAC 1 cut(s) 359
BsoBI CYCGRG 1 cut(s) 377
Bsp13I TCCGGA 1 cut(s) 291
Bsp143I GATC 3 cut(s) 35, 277, 288
BspACI CCGC 2 cut(s) 170, 209
BspDI ATCGAT 1 cut(s) 177
BspEI TCCGGA 1 cut(s) 291
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 375
BspOI GCTAGC 1 cut(s) 152
BspPI GGATC 1 cut(s) 283
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 2 cut(s) 45, 46
BssMI GATC 3 cut(s) 35, 277, 288
Bst2UI CCWGG 2 cut(s) 47, 110
Bst6I CTCTTC 1 cut(s) 438
BstC8I GCNNGC 2 cut(s) 150, 354
BstENI CCTNNNNNAGG 1 cut(s) 422
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 3 cut(s) 38, 280, 291
BstMAI GTCTC 5 cut(s) 9, 33, 58, 322, 441
BstMBI GATC 3 cut(s) 35, 277, 288
BstNI CCWGG 2 cut(s) 47, 110
BstSCI CCNGG 2 cut(s) 45, 108
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 2 cut(s) 178, 343
BstX2I RGATCY 2 cut(s) 277, 288
BstYI RGATCY 2 cut(s) 277, 288
Bsu15I ATCGAT 1 cut(s) 177
BsuTUI ATCGAT 1 cut(s) 177
Cac8I GCNNGC 2 cut(s) 150, 354
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 373
ClaI ATCGAT 1 cut(s) 177
CviAII CATG 2 cut(s) 254, 323
CviJI RGCY 4 cut(s) 152, 232, 250, 409
CviKI_1 RGCY 4 cut(s) 152, 232, 250, 409
DpnI GATC 3 cut(s) 37, 279, 290
DpnII GATC 3 cut(s) 35, 277, 288
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 373
Eco88I CYCGRG 1 cut(s) 377
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 2 cut(s) 45, 108
EcoT22I ATGCAT 1 cut(s) 259
FaeI CATG 2 cut(s) 257, 326
FaiI YATR 6 cut(s) 75, 121, 255, 324, 350, 461
FaqI GGGAC 1 cut(s) 359
FatI CATG 2 cut(s) 253, 322
Fnu4HI GCNGC 2 cut(s) 192, 357
Fsp4HI GCNGC 2 cut(s) 192, 357
FspBI CTAG 2 cut(s) 149, 201
GlaI GCGC 1 cut(s) 104
GluI GCNGC 2 cut(s) 192, 357
GsuI CTGGAG 1 cut(s) 252
HapII CCGG 1 cut(s) 292
HhaI GCGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 257, 326
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HindIII AAGCTT 2 cut(s) 230, 248
HinfI GANTC 3 cut(s) 413, 446, 451
HpaII CCGG 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 5 cut(s) 56, 269, 281, 292, 440
HpyAV CCTTC 2 cut(s) 376, 418
HpyCH4V TGCA 2 cut(s) 123, 257
Hsp92II CATG 2 cut(s) 257, 326
HspAI GCGC 1 cut(s) 103
Kpn2I TCCGGA 1 cut(s) 291
Kzo9I GATC 3 cut(s) 35, 277, 288
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 2 cut(s) 178, 343
LweI GCATC 1 cut(s) 266
MaeI CTAG 2 cut(s) 149, 201
MaeIII GTNAC 1 cut(s) 385
MalI GATC 3 cut(s) 37, 279, 290
MboI GATC 3 cut(s) 35, 277, 288
MboII GAAGA 3 cut(s) 349, 377, 455
MflI RGATCY 2 cut(s) 277, 288
MluCI AATT 2 cut(s) 138, 341
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 1 cut(s) 106
Mph1103I ATGCAT 1 cut(s) 259
MroI TCCGGA 1 cut(s) 291
MseI TTAA 2 cut(s) 141, 484
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 2 cut(s) 47, 110
MvaI CCWGG 2 cut(s) 47, 110
MvnI CGCG 1 cut(s) 105
NdeII GATC 3 cut(s) 35, 277, 288
NheI GCTAGC 1 cut(s) 148
NlaIII CATG 2 cut(s) 257, 326
NlaIV GGNNCC 1 cut(s) 375
NsiI ATGCAT 1 cut(s) 259
PasI CCCWGGG 1 cut(s) 46
PfeI GAWTC 2 cut(s) 413, 451
PkrI GCNGC 2 cut(s) 193, 358
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PpuMI RGGWCCY 1 cut(s) 373
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 2 cut(s) 45, 108
PspGI CCWGG 2 cut(s) 45, 108
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 1 cut(s) 373
PspPPI RGGWCCY 1 cut(s) 373
PsuI RGATCY 2 cut(s) 277, 288
SaqAI TTAA 2 cut(s) 141, 484
SatI GCNGC 2 cut(s) 192, 357
Sau3AI GATC 3 cut(s) 35, 277, 288
Sau96I GGNCC 1 cut(s) 373
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 2 cut(s) 47, 110
SetI ASST 7 cut(s) 73, 154, 234, 252, 375, 387, 411
SfaNI GCATC 1 cut(s) 266
SinI GGWCC 1 cut(s) 373
SmlI CTYRAG 2 cut(s) 245, 419
SmoI CTYRAG 2 cut(s) 245, 419
Sse9I AATT 2 cut(s) 138, 341
SsiI CCGC 2 cut(s) 170, 209
SspMI CTAG 2 cut(s) 149, 201
StyD4I CCNGG 2 cut(s) 45, 108
TaqI TCGA 3 cut(s) 177, 335, 449
TasI AATT 2 cut(s) 138, 341
TfiI GAWTC 2 cut(s) 413, 451
Tru1I TTAA 2 cut(s) 141, 484
Tru9I TTAA 2 cut(s) 141, 484
TseI GCWGC 2 cut(s) 191, 356
TspDTI ATGAA 3 cut(s) 240, 242, 378
VpaK11BI GGWCC 1 cut(s) 373
XagI CCTNNNNNAGG 1 cut(s) 422
XspI CTAG 2 cut(s) 149, 201
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.