Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

25733654 .. 25737397

Gene Structure 3744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0272000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAAACTATGCTGCAAGAGCAGGAGCGAGGATCGCTCAGGCGGAGCTTGTCGAGGAGGCGTTCGTTTCGGTCTGGGGCGGGTATGGATGATAGGGGATGGACTCTGCTGCATGTCGGTTCTCGCAAGGGTGATCTGAAACAGGTGAGGCGACTTCTTGACGAGGGAATGGATGTGAATGTAGCTGCTTGGGGTCCCAAATCTAAAGGGATTACCCCTCTTCACCTCGCTGCTGAGGGTGGCCATCTTGAGGTTATGGATGAGTTGCTTGAGCGTGGTGCCAACATTGATGCCAGAACCAAGGGTGCTTGCGGCTGGACTCCGCTTCACAATGCAGCCAAAGAAAGGAGGAGGGAAGCAGTCAAATTTCTAGTAGAGAATGGGGCATTCTTGCCAGATGACATGTATGATTGTAGGTTTAATCCTCCACTCCATTACTGCCCTGGTCTTGAGTGGGCTTACGAGGAGATGAAGCGTCTCCAGTTAGAAACATCATCGTCAGGGGACAGCTCTTACAGCTCTGAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

176

Amino Acids

19.84

Weight (kDa)

6.53

Isoelectric Point (pI)

63.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	29 - 99	1.5e-11	Ankyrin repeats (3 copies)
Ank_2	PF12796	69 - 129	7.3e-14	Ankyrin repeats (3 copies)
Ank	PF00023	70 - 101	8.5e-10	Ankyrin repeat
Ank_3	PF13606	70 - 98	1.4e-06	Ankyrin repeat
Ank_4	PF13637	74 - 125	9e-12	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AciI	CCGC	4 cut(s)	43, 80, 312, 323
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	250, 345
AflIII	ACRYGT	1 cut(s)	402
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	5 cut(s)	48, 185, 510, 519, 528
AluI	AGCT	5 cut(s)	48, 185, 510, 519, 528
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	40
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	5 cut(s)	13, 109, 185, 230, 335
ApoI	RAATTY	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	3 cut(s)	143, 157, 215
AvaII	GGWCC	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	278
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	4 cut(s)	96, 172, 217, 347
BccI	CCATC	2 cut(s)	93, 252
BciT130I	CCWGG	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	1 cut(s)	371
BisI	GCNGC	6 cut(s)	14, 110, 186, 231, 313, 336
BlsI	GCNGC	6 cut(s)	15, 111, 187, 232, 314, 337
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	3 cut(s)	195, 196, 280
BmrFI	CCNGG	1 cut(s)	444
BmsI	GCATC	1 cut(s)	280
BplI	GAGNNNNNCTC	2 cut(s)	21, 53
BpmI	CTGGAG	1 cut(s)	464
Bpu10I	CCTNAGC	2 cut(s)	38, 234
BpuEI	CTTGAG	3 cut(s)	269, 290, 470
BsaJI	CCNNGG	2 cut(s)	300, 442
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 345
Bse1I	ACTGG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	300, 442
BseGI	GGATG	4 cut(s)	94, 104, 178, 265
BseLI	CCNNNNNNNGG	2 cut(s)	250, 345
BseMII	CTCAG	3 cut(s)	52, 225, 513
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	3 cut(s)	70, 364, 479
BseXI	GCAGC	4 cut(s)	96, 172, 217, 347
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	278
BslFI	GGGAC	2 cut(s)	180, 518
BslI	CCNNNNNNNGG	2 cut(s)	250, 345
BsmAI	GTCTC	1 cut(s)	482
BsmBI	CGTCTC	1 cut(s)	482
BsmFI	GGGAC	2 cut(s)	180, 518
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	32, 133
BspACI	CCGC	4 cut(s)	43, 80, 312, 323
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	3 cut(s)	51, 226, 514
BspLI	GGNNCC	3 cut(s)	195, 196, 280
BspPI	GGATC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	300, 442
BssMI	GATC	2 cut(s)	32, 133
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	444
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	3 cut(s)	38, 234, 522
BstF5I	GGATG	4 cut(s)	94, 104, 178, 265
BstKTI	GATC	2 cut(s)	35, 136
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	2 cut(s)	32, 133
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 34, 516, 525
BstNI	CCWGG	1 cut(s)	444
BstNSI	RCATGY	2 cut(s)	116, 406
BstSCI	CCNGG	1 cut(s)	442
BstV1I	GCAGC	4 cut(s)	96, 172, 217, 347
BsuRI	GGCC	1 cut(s)	243
BtsCI	GGATG	4 cut(s)	94, 104, 178, 265
Cac8I	GCNNGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	1 cut(s)	464
CviAII	CATG	2 cut(s)	113, 403
CviJI	RGCY	9 cut(s)	48, 185, 243, 315, 338, 458, 510, 519, 528
CviKI_1	RGCY	9 cut(s)	48, 185, 243, 315, 338, 458, 510, 519, 528
DdeI	CTNAG	3 cut(s)	38, 234, 522
DpnI	GATC	2 cut(s)	34, 135
DpnII	GATC	2 cut(s)	32, 133
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
EciI	GGCGGA	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	482
FaeI	CATG	2 cut(s)	116, 406
FaiI	YATR	6 cut(s)	11, 86, 114, 257, 404, 408
FaqI	GGGAC	2 cut(s)	180, 518
FatI	CATG	2 cut(s)	112, 402
FauI	CCCGC	1 cut(s)	73
Fnu4HI	GCNGC	6 cut(s)	14, 110, 186, 231, 313, 336
FokI	GGATG	4 cut(s)	101, 111, 185, 272
Fsp4HI	GCNGC	6 cut(s)	14, 110, 186, 231, 313, 336
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	6 cut(s)	14, 110, 186, 231, 313, 336
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	243
HgaI	GACGC	1 cut(s)	464
Hin1II	CATG	2 cut(s)	116, 406
HinfI	GANTC	2 cut(s)	103, 319
HphI	GGTGA	3 cut(s)	143, 157, 215
Hpy188I	TCNGA	2 cut(s)	138, 523
Hpy188III	TCNNGA	3 cut(s)	158, 248, 449
HpyCH4V	TGCA	3 cut(s)	16, 112, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 34, 516, 525
HpyF3I	CTNAG	3 cut(s)	38, 234, 522
Hsp92II	CATG	2 cut(s)	116, 406
KflI	GGGWCCC	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	32, 133
LmnI	GCTCC	2 cut(s)	25, 45
Lsp1109I	GCAGC	4 cut(s)	96, 172, 217, 347
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	371
MalI	GATC	2 cut(s)	34, 135
MboI	GATC	2 cut(s)	32, 133
MboII	GAAGA	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	1 cut(s)	365
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	97, 313
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	444
Mva1269I	GAATGC	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	4 cut(s)	19, 34, 516, 525
NdeII	GATC	2 cut(s)	32, 133
NlaIII	CATG	2 cut(s)	116, 406
NlaIV	GGNNCC	3 cut(s)	195, 196, 280
NspI	RCATGY	2 cut(s)	116, 406
PciI	ACATGT	1 cut(s)	402
PctI	GAATGC	1 cut(s)	386
PkrI	GCNGC	6 cut(s)	15, 111, 187, 232, 314, 337
PleI	GAGTC	2 cut(s)	97, 313
PpsI	GAGTC	2 cut(s)	97, 313
PpuMI	RGGWCCY	1 cut(s)	194
PscI	ACATGT	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	3 cut(s)	195, 196, 280
PspPI	GGNCC	1 cut(s)	194
PspPPI	RGGWCCY	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	6 cut(s)	14, 110, 186, 231, 313, 336
Sau3AI	GATC	2 cut(s)	32, 133
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	2 cut(s)	97, 313
ScrFI	CCNGG	1 cut(s)	444
SetI	ASST	9 cut(s)	50, 147, 187, 228, 255, 419, 512, 521, 530
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	194
SmlI	CTYRAG	3 cut(s)	248, 269, 449
SmoI	CTYRAG	3 cut(s)	248, 269, 449
Sse9I	AATT	1 cut(s)	365
SsiI	CCGC	4 cut(s)	43, 80, 312, 323
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	442
StyI	CCWWGG	1 cut(s)	300
TaqI	TCGA	1 cut(s)	53
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	365
TauI	GCSGC	1 cut(s)	315
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseI	GCWGC	5 cut(s)	13, 109, 185, 230, 335
TspDTI	ATGAA	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	2 cut(s)	116, 406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.