Rh1AG413400

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
64575678 .. 64583288
7611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG413400.1

Sequence Viewer

Length: 3144 bp
ATGGACACTGGAATCGAAGACCCGGAGAAGAAGAAGAAGAAGGAAGAGAAGGCAAGAGAGAAAGAATTGAAAAAGCAAAAAGCTTTAGAGAAAGCTGCCAAGTTCCAGGCACAACAAGCGAATGCTGCTTCGAAGAAGAGTGAGAAGAAGAGTGTGAAGCGTGGGAATGAAGAGGATGAAAATGCAGCTGATTTTGTTGATCCTCCGACTCCGGTTGGCGAGAAGAAGCAGATGTCTAAGCAGATGGCCAAGCAGTACAGTCCAAGTGCTGTCGAGAAGGCGTGGTATGAGTGGTGGGAGGAAGTGGGGTTCTTTGTGCCAGATGCTAAGAGCTCTAAACCTCCGTTTGTGATTGTTTTCCCGCCCCCCAATGTGACTGGCGCGCTTCATATAGGCCATGCCCTTACTGCTGCTATTGAGGACACTATGATTCGTTGGCGAAGAATGTCGGGTTACAATGCCTTGTGGGTGCCTGGAATGGACCATGCTGGGATTGCAACTCAGGTTGTTGTAGAAAAGAAGCTGATGCGTGAACGCAATTTAACCCGACATGATATTGGTCGCGACGAGTTTGTGTCTGAAGTTTGGAAATGGAAAAATAATTACGGGGGCACTATACTAAAGCAGCTACGTCGTCTGGGTGCTTCATTGGATTGGTCCCGTGAGTGCTTTACAATGGATGAGAAGAGGTCAAATGCTGTGACGGAGGCTTTTGTGAGGCTTCATAAGCAAGGGCTTATCTACAGGGATAACCGCCTAGTGAATTGGGATTGTGTCTTGCGAACGGCAATATCTGAAATTGAGGTGGACTATATAGATATAAAAGAAAGAACATCTCTTGAGGTTCCTGGATACAAGAACCGTGTTGAATTTGGCGTTTTAACATCATTTGCATACCCTCTGGAAGACAATTTGGGTGAGATAGTTGTGGCAACCACCAGAGTGGAAACTATGCTCGGTGATACTGCTATTGCTGTACATCCAGATGATGACAGATATAAGCATCTTCATGGAAAGCATGCCATTCATCCATTTAATGGAAGAAGGATTCGTATAATCTGTGATGCAATTCTCGTTGATCCAGAGTTTGGGACTGGTGCTGTGAAGATTACTCCGGCCCATGATCCTAATGACTTTAACGTCGGAAAGCGCCATAATCTGGACTTTATAAACGTCTTCACTGATGATGGAGAAATAAACCAGGATGGTGGAGAGTTTGCAGGGATGCCACGCTTCAAAGCCCGGGAGGCAGTTACTGAAGCATTAAAGAAGAAGGGCCTCTTTAAAGAAGCAACGACAAATGAGATGCGTCTTGGTATATGCTCTAGAAGCAAGGATGTTGTTGAACCCATGATAAAGCCCCAGTGGTATGTCAAATGTAGTGGTATGGCCAAGGGAGCCCTTGATGCTGCTGTAGATGATGATAATAGAAAGCTTGACATCATTCCGAGACAGTATAATGCTGATTGGAAGAGATGGCTTGAGAACATTCGTGATTGGTGCGTCTCACGGCAACTTTGGTGGGGTCACCGCATTCCTGCATGGTATGCCGTTTTGGATGGTGACAAGCCAGAAGATTTAGGATCATTAGATGACCGATGGGTGGTTGCAAGAAATGAGGAAGAGGCTAAAGCACTGGCTAGTCAAAGATATGAGGGAAAGGAGGTTAAACTAGAACAGGATCCTGATGTGCTTGACACGTGGTTTTCTTCTGGTCTCTTCCCATTGTCCGTGTTGGGTTGGCCGGAAGATACAGAAGATTTGAGAGCTTTCTATCCAACTTCAGTTCTTGAAACTGGGCATGACATTATCTTTTTCTGGGTCTCTCGTATGGTAATGCTTGGAAGTACATTGGGTGGTAATGTACCTTTCACAAAGGTGTATTTGCATCCAATGATTCGTGATGCGCATGGGCGTAAAATGTCCAAGTCCTTGGGGAATGTCATTGATCCTCTTGATGTGATCAATGGTGTTTCGCTGGAAGATCTACACAAGAAGCTTTCAGAGGGAAATTTGGACCTGAGGGAAATAGCTATAGCCAAAGAAGGCCAAAAAAAGGATTTTCCTGATGGTATTGCTGAATGTGGTTCTGATGCGCTACATTTTGCTCTGGTCTCATACACTGCTCAGTCTGATAAGATAAATCTGGATATCCAAAGGGTTGTCGGTTACCGGCAGTGGTGTAATAAACTTTGGAACGCCGTACGATTTGCTATGAGCAAACTTGGGGATGATTATGTTCCGCCGTCAACAGTAATCCCGGATGTGCTTCCATTTAGTTGCCGGTGGATACTCTCGGTACTTAATAAAGCCATCTCCAAAACTATTTTGTCATTGGAATCGTACGAGTTTTCAGATGCAGCCACTGCAGTGTATGCTTGGTGGCAGTACCAATTGTGTGATGTGTTCATTGAAGCCATAAAACCCTACTTTGCTGGAAACAATCCAAAGTTTGCATCTGAAAGGGGTTTTGCACAAGACACGCTCTGGTTGTGTCTGGATACTGGACTACGGCTGCTTCACCCATTTATGCCTTTCGTTACCGAAGAACTATGGCAGCGTCTCCCATCATCCAAGCATCACAATAGGGCAGCATCAATTATGATATGCGACTACCCATCCATCGTGGAGTGCTGGACAAATGAAAGGGTGGAGTCTGAAATGAGTCTTATTGACTCTATTGTTAGATCTCTCCGGTCACTGTCTCAAGAGAGTCGTGAAAGACGACCAGCTTTTGTGCTGTGTCGATCAATGTCAGATCGAGAGATAATATGTAGACAACAACTAGAGATTGAAACTCTTGCCAATCTGTCATCTCTGACGGTAATCAGTGAGAATGAAGCTGCCCCAACTGGATGTGCTGTGTCTGTTGTAAACGAAAACCTATCTGTTTATCTGAAGGTTCTAGGATCTCGTTCTGCAGAAATAGATCTTGAAAAGATCCGGAAAAAGATGGAAGACATTAAATTGCAACGGGAGAAGATTACGAAGGTGATGAATGCTGCTGGTTACAAAGAAAAGGTCCCCGAGAAGATACAAAAAGCTAATGCTGATAAACTTGAATCCCTCGAGAAGGAAAAACTGTCTCTTGAAGAGGCAAGCCAACATATGGAAGCGCAGATATCAAGCAATAAACAAGATTGA

Protein Analysis

1047

Amino Acids

119.19

Weight (kDa)

6.09

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1 PF00133 95 - 716 2.3e-143 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g PF09334 121 - 183 6.6e-07 tRNA synthetases class I (M)
tRNA-synt_1_2 PF13603 337 - 397 5.5e-07 Leucyl-tRNA synthetase, editing domain
Anticodon_1 PF08264 762 - 902 2.7e-33 Anticodon-binding domain of tRNA ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1169
AasI GACNNNNNNGTC 1 cut(s) 1139
Acc16I TGCGCA 1 cut(s) 1908
AccB1I GGYRCC 1 cut(s) 469
AccB7I CCANNNNNTGG 4 cut(s) 1037, 1088, 1159, 3109
AccI GTMKAC 1 cut(s) 2776
AccII CGCG 2 cut(s) 383, 564
AccIII TCCGGA 1 cut(s) 2943
AciI CCGC 4 cut(s) 362, 754, 1531, 2243
AclWI GGATC 9 cut(s) 194, 1073, 1118, 1591, 1676, 1689, 1943, 2917, 2935
AcoI YGGCCR 3 cut(s) 246, 1389, 1742
AcsI RAATTY 2 cut(s) 869, 2011
AcuI CTGAAG 4 cut(s) 600, 1278, 1767, 2918
AcvI CACGTG 1 cut(s) 1701
AfaI GTAC 8 cut(s) 257, 978, 1849, 1866, 2205, 2301, 2345, 2390
AfiI CCNNNNNNNGG 7 cut(s) 1037, 1088, 1159, 1603, 2056, 3073, 3109
AflIII ACRYGT 1 cut(s) 1698
AjnI CCWGG 4 cut(s) 105, 472, 847, 1200
AleI CACNNNNGTG 3 cut(s) 941, 1877, 2369
AloI GAACNNNNNNTCC 2 cut(s) 293, 325
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 8 cut(s) 1444, 1510, 1721, 1828, 2119, 2567, 2709, 3090
AlwI GGATC 9 cut(s) 194, 1073, 1118, 1591, 1676, 1689, 1943, 2917, 2935
AlwNI CAGNNNCTG 2 cut(s) 1256, 2366
Ama87I CYCGRG 3 cut(s) 1242, 3026, 3068
Aor13HI TCCGGA 1 cut(s) 2943
AoxI GGCC 7 cut(s) 246, 394, 1116, 1276, 1389, 1742, 2047
ApoI RAATTY 2 cut(s) 869, 2011
ArsI GACNNNNNNTTYG 2 cut(s) 3006, 3038
AspLEI GCGC 6 cut(s) 383, 385, 1152, 1909, 2098, 3118
AspS9I GGNCC 6 cut(s) 481, 657, 1117, 1276, 2017, 3022
AsuC2I CCSGG 4 cut(s) 23, 1243, 1244, 2261
AsuHPI GGTGA 6 cut(s) 929, 971, 1520, 1574, 2513, 3004
AsuII TTCGAA 1 cut(s) 131
AvaI CYCGRG 3 cut(s) 1242, 3026, 3068
AvaII GGWCC 4 cut(s) 481, 657, 2017, 3022
AxyI CCTNAGG 1 cut(s) 2021
BaeGI GKGCMC 1 cut(s) 614
BalI TGGCCA 2 cut(s) 248, 1391
BamHI GGATCC 1 cut(s) 1681
BanI GGYRCC 1 cut(s) 469
BanII GRGCYC 2 cut(s) 335, 1402
BbrPI CACGTG 1 cut(s) 1701
BbsI GAAGAC 4 cut(s) 24, 912, 1168, 2964
Bbv12I GWGCWC 1 cut(s) 335
BceAI ACGGC 6 cut(s) 801, 1526, 1535, 2186, 2230, 2528
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 4 cut(s) 107, 474, 849, 1202
BciVI GTATCC 3 cut(s) 845, 2283, 2494
BclI TGATCA 1 cut(s) 1962
BcnI CCSGG 4 cut(s) 23, 1243, 1244, 2261
BcoDI GTCTC 8 cut(s) 1444, 1510, 1721, 1828, 2119, 2567, 2709, 3090
BfaI CTAG 6 cut(s) 758, 1326, 1641, 1673, 2786, 2906
BfmI CTRYAG 5 cut(s) 742, 1413, 2034, 2367, 2919
BfoI RGCGCY 1 cut(s) 1153
BfuI GTATCC 3 cut(s) 845, 2283, 2494
BglI GCCNNNNNGGC 1 cut(s) 1247
BglII AGATCT 3 cut(s) 1984, 2687, 2929
Bme1390I CCNGG 8 cut(s) 23, 107, 474, 849, 1202, 1243, 1244, 2261
Bme18I GGWCC 4 cut(s) 481, 657, 2017, 3022
BmeT110I CYCGRG 3 cut(s) 1242, 3026, 3068
BmgT120I GGNCC 6 cut(s) 481, 657, 1117, 1276, 2017, 3022
BmiI GGNNCC 6 cut(s) 471, 659, 846, 1399, 1683, 3024
BmrFI CCNGG 8 cut(s) 23, 107, 474, 849, 1202, 1243, 1244, 2261
BmrI ACTGGG 2 cut(s) 1357, 1806
BmuI ACTGGG 2 cut(s) 1357, 1806
BpiI GAAGAC 4 cut(s) 24, 912, 1168, 2964
Bpu14I TTCGAA 1 cut(s) 131
BpuEI CTTGAG 3 cut(s) 860, 1502, 2691
BpuMI CCSGG 4 cut(s) 23, 1243, 1244, 2261
BsaAI YACGTR 1 cut(s) 1701
BsaI GGTCTC 3 cut(s) 1721, 1828, 2119
BsaJI CCNNGG 3 cut(s) 1242, 1392, 1932
BsaWI WCCGGW 3 cut(s) 211, 2694, 2943
Bsc4I CCNNNNNNNGG 7 cut(s) 1037, 1088, 1159, 1603, 2056, 3073, 3109
Bse118I RCCGGY 2 cut(s) 2172, 2283
Bse1I ACTGG 8 cut(s) 13, 382, 1099, 1363, 1641, 1801, 2509, 2857
Bse21I CCTNAGG 1 cut(s) 2021
BseAI TCCGGA 1 cut(s) 2943
BseBI CCWGG 4 cut(s) 107, 474, 849, 1202
BseDI CCNNGG 3 cut(s) 1242, 1392, 1932
BseLI CCNNNNNNNGG 7 cut(s) 1037, 1088, 1159, 1603, 2056, 3073, 3109
BseMII CTCAG 3 cut(s) 515, 2012, 2141
BseNI ACTGG 8 cut(s) 13, 382, 1099, 1363, 1641, 1801, 2509, 2857
BsePI GCGCGC 1 cut(s) 381
BseSI GKGCMC 1 cut(s) 614
BseYI CCCAGC 1 cut(s) 488
Bsh1236I CGCG 2 cut(s) 383, 564
BshFI GGCC 7 cut(s) 248, 396, 1118, 1278, 1391, 1744, 2049
BshNI GGYRCC 1 cut(s) 469
BsiHKAI GWGCWC 1 cut(s) 335
BsiHKCI CYCGRG 3 cut(s) 1242, 3026, 3068
BsiWI CGTACG 2 cut(s) 2203, 2343
BslFI GGGAC 3 cut(s) 643, 1105, 3008
BslI CCNNNNNNNGG 7 cut(s) 1037, 1088, 1159, 1603, 2056, 3073, 3109
BsmAI GTCTC 8 cut(s) 1444, 1510, 1721, 1828, 2119, 2567, 2709, 3090
BsmBI CGTCTC 2 cut(s) 1510, 2567
BsmFI GGGAC 3 cut(s) 643, 1105, 3008
BsmI GAATGC 3 cut(s) 127, 1533, 3004
BsnI GGCC 7 cut(s) 248, 396, 1118, 1278, 1391, 1744, 2049
Bso31I GGTCTC 3 cut(s) 1721, 1828, 2119
BsoBI CYCGRG 3 cut(s) 1242, 3026, 3068
Bsp119I TTCGAA 1 cut(s) 131
Bsp1286I GDGCHC 3 cut(s) 335, 614, 1402
Bsp13I TCCGGA 1 cut(s) 2943
Bsp1407I TGTACA 1 cut(s) 976
Bsp68I TCGCGA 1 cut(s) 564
BspACI CCGC 4 cut(s) 362, 754, 1531, 2243
BspANI GGCC 7 cut(s) 248, 396, 1118, 1278, 1391, 1744, 2049
BspCNI CTCAG 3 cut(s) 514, 2013, 2140
BspEI TCCGGA 1 cut(s) 2943
BspFNI CGCG 2 cut(s) 383, 564
BspLI GGNNCC 6 cut(s) 471, 659, 846, 1399, 1683, 3024
BspMAI CTGCAG 2 cut(s) 2371, 2923
BspPI GGATC 9 cut(s) 194, 1073, 1118, 1591, 1676, 1689, 1943, 2917, 2935
BspT104I TTCGAA 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 469
BspTNI GGTCTC 3 cut(s) 1721, 1828, 2119
BsrFI RCCGGY 2 cut(s) 2172, 2283
BsrGI TGTACA 1 cut(s) 976
BsrI ACTGG 8 cut(s) 13, 382, 1099, 1363, 1641, 1801, 2509, 2857
BssAI RCCGGY 2 cut(s) 2172, 2283
BssECI CCNNGG 3 cut(s) 1242, 1392, 1932
BssHII GCGCGC 1 cut(s) 381
BssT1I CCWWGG 2 cut(s) 1392, 1932
Bst2UI CCWGG 4 cut(s) 107, 474, 849, 1202
Bst4CI ACNGT 7 cut(s) 260, 863, 1455, 2254, 2703, 2824, 3084
Bst6I CTCTTC 9 cut(s) 39, 131, 143, 165, 680, 1466, 1617, 1724, 3087
BstAPI GCANNNNNTGC 3 cut(s) 1547, 2366, 2375
BstAUI TGTACA 1 cut(s) 976
BstBAI YACGTR 1 cut(s) 1701
BstBI TTCGAA 1 cut(s) 131
BstC8I GCNNGC 3 cut(s) 383, 1020, 3100
BstDEI CTNAG 5 cut(s) 237, 327, 501, 2021, 2127
BstEII GGTNACC 2 cut(s) 1526, 2168
BstENI CCTNNNNNAGG 1 cut(s) 3071
BstFNI CGCG 2 cut(s) 383, 564
BstH2I RGCGCY 1 cut(s) 1153
BstHHI GCGC 6 cut(s) 383, 385, 1152, 1909, 2098, 3118
BstMAI GTCTC 8 cut(s) 1444, 1510, 1721, 1828, 2119, 2567, 2709, 3090
BstNI CCWGG 4 cut(s) 107, 474, 849, 1202
BstNSI RCATGY 1 cut(s) 1022
BstPI GGTNACC 2 cut(s) 1526, 2168
BstSCI CCNGG 8 cut(s) 21, 105, 472, 847, 1200, 1241, 1242, 2259
BstSFI CTRYAG 5 cut(s) 742, 1413, 2034, 2367, 2919
BstSLI GKGCMC 1 cut(s) 614
BstUI CGCG 2 cut(s) 383, 564
BstV2I GAAGAC 4 cut(s) 24, 912, 1168, 2964
BstX2I RGATCY 6 cut(s) 1681, 1984, 2687, 2909, 2929, 2940
BstXI CCANNNNNNTGG 3 cut(s) 943, 1208, 1933
BstYI RGATCY 6 cut(s) 1681, 1984, 2687, 2909, 2929, 2940
Bsu36I CCTNAGG 1 cut(s) 2021
BsuI GTATCC 3 cut(s) 845, 2283, 2494
BsuRI GGCC 7 cut(s) 248, 396, 1118, 1278, 1391, 1744, 2049
BtsI GCAGTG 4 cut(s) 2121, 2183, 2364, 2376
BtuMI TCGCGA 1 cut(s) 564
Cac8I GCNNGC 3 cut(s) 383, 1020, 3100
CaiI CAGNNNCTG 2 cut(s) 1256, 2366
CfoI GCGC 6 cut(s) 383, 385, 1152, 1909, 2098, 3118
Cfr10I RCCGGY 2 cut(s) 2172, 2283
Cfr13I GGNCC 6 cut(s) 481, 657, 1117, 1276, 2017, 3022
Cfr9I CCCGGG 1 cut(s) 1242
CseI GACGC 3 cut(s) 1298, 1492, 2549
Csp6I GTAC 8 cut(s) 256, 977, 1848, 1865, 2204, 2300, 2344, 2389
CspCI CAANNNNNGTGG 4 cut(s) 1363, 1398, 1502, 1537
CviQI GTAC 8 cut(s) 256, 977, 1848, 1865, 2204, 2300, 2344, 2389
DdeI CTNAG 5 cut(s) 237, 327, 501, 2021, 2127
DraI TTTAAA 1 cut(s) 1285
DrdI GACNNNNNNGTC 1 cut(s) 1139
DseDI GACNNNNNNGTC 1 cut(s) 1139
EaeI YGGCCR 3 cut(s) 246, 1389, 1742
Eam1104I CTCTTC 9 cut(s) 39, 131, 143, 165, 680, 1466, 1617, 1724, 3087
EarI CTCTTC 9 cut(s) 39, 131, 143, 165, 680, 1466, 1617, 1724, 3087
EciI GGCGGA 1 cut(s) 2232
Ecl136II GAGCTC 1 cut(s) 333
Eco130I CCWWGG 2 cut(s) 1392, 1932
Eco24I GRGCYC 2 cut(s) 335, 1402
Eco31I GGTCTC 3 cut(s) 1721, 1828, 2119
Eco32I GATATC 2 cut(s) 2152, 3123
Eco47I GGWCC 4 cut(s) 481, 657, 2017, 3022
Eco53kI GAGCTC 1 cut(s) 333
Eco57I CTGAAG 4 cut(s) 600, 1278, 1767, 2918
Eco72I CACGTG 1 cut(s) 1701
Eco81I CCTNAGG 1 cut(s) 2021
Eco88I CYCGRG 3 cut(s) 1242, 3026, 3068
Eco91I GGTNACC 2 cut(s) 1526, 2168
EcoICRI GAGCTC 1 cut(s) 333
EcoNI CCTNNNNNAGG 1 cut(s) 3071
EcoO109I RGGNCCY 2 cut(s) 1276, 3022
EcoO65I GGTNACC 2 cut(s) 1526, 2168
EcoRII CCWGG 4 cut(s) 105, 472, 847, 1200
EcoRV GATATC 2 cut(s) 2152, 3123
EcoT14I CCWWGG 2 cut(s) 1392, 1932
EcoT38I GRGCYC 2 cut(s) 335, 1402
ErhI CCWWGG 2 cut(s) 1392, 1932
Esp3I CGTCTC 2 cut(s) 1510, 2567
FalI AAGNNNNNCTT 2 cut(s) 1265, 1297
FaqI GGGAC 3 cut(s) 643, 1105, 3008
FauI CCCGC 1 cut(s) 369
FauNDI CATATG 1 cut(s) 3108
FbaI TGATCA 1 cut(s) 1962
FblI GTMKAC 1 cut(s) 2776
FriOI GRGCYC 2 cut(s) 335, 1402
FspAI RTGCGCAY 1 cut(s) 1908
FspBI CTAG 6 cut(s) 758, 1326, 1641, 1673, 2786, 2906
FspI TGCGCA 1 cut(s) 1908
GlaI GCGC 6 cut(s) 382, 384, 1151, 1908, 2097, 3117
GsaI CCCAGC 1 cut(s) 492
HaeII RGCGCY 1 cut(s) 1153
HaeIII GGCC 7 cut(s) 248, 396, 1118, 1278, 1391, 1744, 2049
HgaI GACGC 3 cut(s) 1298, 1492, 2549
HhaI GCGC 6 cut(s) 383, 385, 1152, 1909, 2098, 3118
Hin6I GCGC 6 cut(s) 381, 383, 1150, 1907, 2096, 3116
HinP1I GCGC 6 cut(s) 381, 383, 1150, 1907, 2096, 3116
HincII GTYRAC 1 cut(s) 2250
HindII GTYRAC 1 cut(s) 2250
HindIII AAGCTT 3 cut(s) 81, 1433, 1997
HphI GGTGA 6 cut(s) 929, 971, 1520, 1574, 2513, 3004
Hpy166II GTNNAC 5 cut(s) 533, 808, 2250, 2777, 2875
Hpy8I GTNNAC 5 cut(s) 533, 808, 2250, 2777, 2875
Hpy99I CGWCG 3 cut(s) 569, 636, 1145
HpyAV CCTTC 9 cut(s) 34, 43, 271, 1038, 1267, 2039, 2893, 2983, 3067
HpyCH4III ACNGT 7 cut(s) 260, 863, 1455, 2254, 2703, 2824, 3084
HpyCH4IV ACGT 4 cut(s) 631, 1140, 1173, 1700
HpyF3I CTNAG 5 cut(s) 237, 327, 501, 2021, 2127
HpySE526I ACGT 4 cut(s) 631, 1140, 1173, 1700
HspAI GCGC 6 cut(s) 381, 383, 1150, 1907, 2096, 3116
Kpn2I TCCGGA 1 cut(s) 2943
Ksp22I TGATCA 1 cut(s) 1962
LmnI GCTCC 1 cut(s) 1397
MaeI CTAG 6 cut(s) 758, 1326, 1641, 1673, 2786, 2906
MaeII ACGT 4 cut(s) 631, 1140, 1173, 1700
MfeI CAATTG 1 cut(s) 2393
MflI RGATCY 6 cut(s) 1681, 1984, 2687, 2909, 2929, 2940
MhlI GDGCHC 3 cut(s) 335, 614, 1402
MlsI TGGCCA 2 cut(s) 248, 1391
MluNI TGGCCA 2 cut(s) 248, 1391
MlyI GAGTC 5 cut(s) 202, 2663, 2669, 2674, 2722
MmeI TCCRAC 3 cut(s) 230, 1123, 1802
Mox20I TGGCCA 2 cut(s) 248, 1391
MroI TCCGGA 1 cut(s) 2943
MscI TGGCCA 2 cut(s) 248, 1391
MseI TTAA 9 cut(s) 542, 881, 1035, 1137, 1265, 1284, 1668, 2304, 2964
MslI CAYNNNNRTG 5 cut(s) 941, 984, 1008, 1877, 2369
Msp20I TGGCCA 2 cut(s) 248, 1391
MspA1I CMGCKG 1 cut(s) 188
MspR9I CCNGG 8 cut(s) 23, 107, 474, 849, 1202, 1243, 1244, 2261
MunI CAATTG 1 cut(s) 2393
Mva1269I GAATGC 3 cut(s) 127, 1533, 3004
MvaI CCWGG 4 cut(s) 107, 474, 849, 1202
MvnI CGCG 2 cut(s) 383, 564
NciI CCSGG 4 cut(s) 23, 1243, 1244, 2261
NdeI CATATG 1 cut(s) 3108
NlaIV GGNNCC 6 cut(s) 471, 659, 846, 1399, 1683, 3024
NmuCI GTSAC 5 cut(s) 373, 700, 1526, 1562, 2697
NruI TCGCGA 1 cut(s) 564
NsbI TGCGCA 1 cut(s) 1908
NspI RCATGY 1 cut(s) 1022
NspV TTCGAA 1 cut(s) 131
OliI CACNNNNGTG 3 cut(s) 941, 1877, 2369
PaeI GCATGC 1 cut(s) 1022
PaeR7I CTCGAG 1 cut(s) 3068
PauI GCGCGC 1 cut(s) 381
PcsI WCGNNNNNNNCGW 1 cut(s) 2722
PctI GAATGC 3 cut(s) 127, 1533, 3004
PfeI GAWTC 6 cut(s) 12, 430, 1048, 1897, 2339, 3062
Pfl23II CGTACG 2 cut(s) 2203, 2343
PflMI CCANNNNNTGG 4 cut(s) 1037, 1088, 1159, 3109
PfoI TCCNGGA 2 cut(s) 847, 2259
PleI GAGTC 5 cut(s) 202, 2662, 2669, 2673, 2721
PmaCI CACGTG 1 cut(s) 1701
PmlI CACGTG 1 cut(s) 1701
PpsI GAGTC 5 cut(s) 202, 2662, 2669, 2673, 2721
Ppu21I YACGTR 1 cut(s) 1701
PpuMI RGGWCCY 1 cut(s) 3022
PsiI TTATAA 1 cut(s) 1169
Psp124BI GAGCTC 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 3022
Psp6I CCWGG 4 cut(s) 105, 472, 847, 1200
PspCI CACGTG 1 cut(s) 1701
PspEI GGTNACC 2 cut(s) 1526, 2168
PspFI CCCAGC 1 cut(s) 488
PspGI CCWGG 4 cut(s) 105, 472, 847, 1200
PspLI CGTACG 2 cut(s) 2203, 2343
PspN4I GGNNCC 6 cut(s) 471, 659, 846, 1399, 1683, 3024
PspPI GGNCC 6 cut(s) 481, 657, 1117, 1276, 2017, 3022
PspPPI RGGWCCY 1 cut(s) 3022
PstI CTGCAG 2 cut(s) 2371, 2923
PstNI CAGNNNCTG 2 cut(s) 1256, 2366
PsuI RGATCY 6 cut(s) 1681, 1984, 2687, 2909, 2929, 2940
PteI GCGCGC 1 cut(s) 381
PvuII CAGCTG 1 cut(s) 188
RruI TCGCGA 1 cut(s) 564
RsaI GTAC 8 cut(s) 257, 978, 1849, 1866, 2205, 2301, 2345, 2390
RsaNI GTAC 8 cut(s) 256, 977, 1848, 1865, 2204, 2300, 2344, 2389
RseI CAYNNNNRTG 5 cut(s) 941, 984, 1008, 1877, 2369
SacI GAGCTC 1 cut(s) 335
SaqAI TTAA 9 cut(s) 542, 881, 1035, 1137, 1265, 1284, 1668, 2304, 2964
Sau96I GGNCC 6 cut(s) 481, 657, 1117, 1276, 2017, 3022
SchI GAGTC 5 cut(s) 202, 2663, 2669, 2674, 2722
ScrFI CCNGG 8 cut(s) 23, 107, 474, 849, 1202, 1243, 1244, 2261
SduI GDGCHC 3 cut(s) 335, 614, 1402
SfcI CTRYAG 5 cut(s) 742, 1413, 2034, 2367, 2919
Sfr274I CTCGAG 1 cut(s) 3068
SfuI TTCGAA 1 cut(s) 131
SinI GGWCC 4 cut(s) 481, 657, 2017, 3022
SlaI CTCGAG 1 cut(s) 3068
SmaI CCCGGG 1 cut(s) 1244
SmiMI CAYNNNNRTG 5 cut(s) 941, 984, 1008, 1877, 2369
SmlI CTYRAG 4 cut(s) 839, 1481, 2706, 3068
SmoI CTYRAG 4 cut(s) 839, 1481, 2706, 3068
SphI GCATGC 1 cut(s) 1022
SsiI CCGC 4 cut(s) 362, 754, 1531, 2243
SspMI CTAG 6 cut(s) 758, 1326, 1641, 1673, 2786, 2906
SstI GAGCTC 1 cut(s) 335
StyD4I CCNGG 8 cut(s) 21, 105, 472, 847, 1200, 1241, 1242, 2259
StyI CCWWGG 2 cut(s) 1392, 1932
TaaI ACNGT 7 cut(s) 260, 863, 1455, 2254, 2703, 2824, 3084
TaiI ACGT 4 cut(s) 634, 1143, 1176, 1703
TaqI TCGA 6 cut(s) 15, 131, 273, 2746, 2761, 3069
TaqII GACCGA 1 cut(s) 1611
TatI WGTACW 3 cut(s) 255, 976, 1847
TfiI GAWTC 6 cut(s) 12, 430, 1048, 1897, 2339, 3062
Tru1I TTAA 9 cut(s) 542, 881, 1035, 1137, 1265, 1284, 1668, 2304, 2964
Tru9I TTAA 9 cut(s) 542, 881, 1035, 1137, 1265, 1284, 1668, 2304, 2964
TseFI GTSAC 5 cut(s) 373, 700, 1526, 1562, 2697
Tsp45I GTSAC 5 cut(s) 373, 700, 1526, 1562, 2697
TspGWI ACGGA 3 cut(s) 333, 719, 1720
TspMI CCCGGG 1 cut(s) 1242
Van91I CCANNNNNTGG 4 cut(s) 1037, 1088, 1159, 3109
VpaK11BI GGWCC 4 cut(s) 481, 657, 2017, 3022
XagI CCTNNNNNAGG 1 cut(s) 3071
XapI RAATTY 2 cut(s) 869, 2011
XbaI TCTAGA 1 cut(s) 1325
XceI RCATGY 1 cut(s) 1022
XhoI CTCGAG 1 cut(s) 3068
XmaI CCCGGG 1 cut(s) 1242
XmiI GTMKAC 1 cut(s) 2776
XspI CTAG 6 cut(s) 758, 1326, 1641, 1673, 2786, 2906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.