Rroxscaffold_3G00228530

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
12975946 .. 12977882
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228530.1

Sequence Viewer

Length: 1071 bp
ATGTCAAAGTCGTTGGGGAATGTGATTGATCCAGTTGATGTGATCAATAGTATTACCCTTGAAGGTTTACACGAGAAGCTTTCAAAAGGAAACTTGGACAAAAAGGAAATAGAAGTAGCCAAAGAAGGGCAAAAGAAGTCATTCCCTAATGGTATCAAGGAATGTGGTGCAGATGCTCTTCGTTTTGCTCTCATTGACTACACTGCACAGTCTGAAAATATAAATCTGGACATCAAGAGGGTGGTGGGATATCGACACTGGTGCAATAAACTATGGAATGCAGTAAGGTTTGCTATTCTGACACTTGGGGACGGTTATGTTCCACCCTCAAATGCAATTAATCCAGAGGAGCTTCCATTTATTTGTCAGTGGATACTCTCAGTACTAAACAAAACAATTGATAAGACTGTGTCCTCATTGGAGTCCTATAAGTTATCTGATGCAGCTAAGGCTGTATATAGTTGGTGGCAGTACCAGTTATGCGATATTTTTATTGAAGGTATCAAGCCTTTCCTTTTTTATAATGATCCAACAGCAGAGTTTGCGAAACACACGCTATGGTTATGTCTTGACAATGGCCTGAGGTTGCTTCATCCTTTTATGCCCTTCATCACAGAAGAGTTGTGGCAACGTCTTCATCTTCATGCAGCACCATCATCGATAATGATAAGTGAATATCCATCCATGGTAGATTGCTGGAAGAATGAAAAAGTAGAGAATGAGATGGATAATCTTGTTATGTTTGTTGTGAATGCTCTGCGTTCACTAGCAAAAGGAAGTCGTCAACGGCGGCCAGGTTTTGTGCTATCTCAGGTGAAAGAAGAGACACAATTGATATCCACTCAATCTGTCATTATTTCTCAATTAGCCAATGTGTGGCCGTTGGTGATAATGGATGAGAAGGATACTGCTCCAACTGGATGGGCAATTCTTGGGCTTGCATCTGAGATATGGCATGCCCTCTTGGGAGTTGTGACTTCTCAACTTGAAGAGCAGCCAAGGACCTCAAAGAAGTTAGGTTTTCCAGCATCGAGTGAATTAGTCTTCGAAGCTGTGAAAACAATGTTTTAG

Protein Analysis

356

Amino Acids

40.28

Weight (kDa)

5.74

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1 PF00133 1 - 77 3e-07 tRNA synthetases class I (I, L, M and V)
Anticodon_1 PF08264 123 - 256 1.9e-29 Anticodon-binding domain of tRNA ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AccB7I CCANNNNNTGG 1 cut(s) 876
AciI CCGC 1 cut(s) 790
AclWI GGATC 2 cut(s) 23, 521
AcoI YGGCCR 2 cut(s) 791, 878
AfaI GTAC 2 cut(s) 384, 473
AfiI CCNNNNNNNGG 2 cut(s) 126, 876
AgsI TTSAA 4 cut(s) 62, 84, 497, 989
AjnI CCWGG 1 cut(s) 793
AluBI AGCT 4 cut(s) 79, 352, 446, 1052
AluI AGCT 4 cut(s) 79, 352, 446, 1052
Alw26I GTCTC 1 cut(s) 818
AlwI GGATC 2 cut(s) 23, 521
AoxI GGCC 3 cut(s) 577, 791, 878
ApeKI GCWGC 3 cut(s) 443, 647, 994
AseI ATTAAT 1 cut(s) 339
Asp700I GAANNNNTTC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 1002
AsuHPI GGTGA 2 cut(s) 826, 898
AsuII TTCGAA 1 cut(s) 1047
AvaII GGWCC 1 cut(s) 1002
AxyI CCTNAGG 1 cut(s) 581
BauI CACGAG 1 cut(s) 71
BbsI GAAGAC 2 cut(s) 626, 1036
BbvI GCAGC 3 cut(s) 455, 659, 1006
BccI CCATC 4 cut(s) 661, 688, 718, 915
BceAI ACGGC 2 cut(s) 803, 865
BcgI CGANNNNNNTGC 4 cut(s) 243, 277, 639, 673
BciT130I CCWGG 1 cut(s) 795
BciVI GTATCC 2 cut(s) 366, 898
BclI TGATCA 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 818
BfaI CTAG 1 cut(s) 767
BfuI GTATCC 2 cut(s) 366, 898
BisI GCNGC 4 cut(s) 444, 648, 791, 995
BlsI GCNGC 4 cut(s) 445, 649, 792, 996
BmcAI AGTACT 1 cut(s) 384
Bme1390I CCNGG 1 cut(s) 795
Bme18I GGWCC 1 cut(s) 1002
BmgT120I GGNCC 1 cut(s) 1002
BmrFI CCNGG 1 cut(s) 795
BmsI GCATC 4 cut(s) 163, 430, 950, 1037
BpiI GAAGAC 2 cut(s) 626, 1036
Bpu10I CCTNAGC 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 1047
Bsa29I ATCGAT 1 cut(s) 659
BsaJI CCNNGG 2 cut(s) 684, 998
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 876
Bse1I ACTGG 4 cut(s) 32, 263, 475, 922
Bse21I CCTNAGG 1 cut(s) 581
BseBI CCWGG 1 cut(s) 795
BseCI ATCGAT 1 cut(s) 659
BseDI CCNNGG 2 cut(s) 684, 998
BseGI GGATG 4 cut(s) 592, 680, 901, 926
BseLI CCNNNNNNNGG 2 cut(s) 126, 876
BseMII CTCAG 4 cut(s) 393, 572, 824, 936
BseNI ACTGG 4 cut(s) 32, 263, 475, 922
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 3 cut(s) 455, 659, 1006
BsgI GTGCAG 2 cut(s) 189, 189
BshFI GGCC 3 cut(s) 579, 793, 880
BshVI ATCGAT 1 cut(s) 659
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 126, 876
BsmAI GTCTC 1 cut(s) 818
BsmFI GGGAC 1 cut(s) 323
BsmI GAATGC 2 cut(s) 283, 757
BsnI GGCC 3 cut(s) 579, 793, 880
Bsp119I TTCGAA 1 cut(s) 1047
Bsp143I GATC 3 cut(s) 28, 42, 526
Bsp19I CCATGG 1 cut(s) 684
BspACI CCGC 1 cut(s) 790
BspANI GGCC 3 cut(s) 579, 793, 880
BspCNI CTCAG 4 cut(s) 392, 573, 823, 937
BspDI ATCGAT 1 cut(s) 659
BspPI GGATC 2 cut(s) 23, 521
BspQI GCTCTTC 2 cut(s) 183, 984
BspT104I TTCGAA 1 cut(s) 1047
BsrI ACTGG 4 cut(s) 32, 263, 475, 922
BssECI CCNNGG 2 cut(s) 684, 998
BssMI GATC 3 cut(s) 28, 42, 526
BssSI CACGAG 1 cut(s) 71
BssT1I CCWWGG 2 cut(s) 684, 998
Bst2BI CACGAG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 795
Bst4CI ACNGT 3 cut(s) 210, 314, 409
Bst6I CTCTTC 4 cut(s) 183, 612, 816, 984
BstAPI GCANNNNNTGC 1 cut(s) 542
BstBI TTCGAA 1 cut(s) 1047
BstC8I GCNNGC 2 cut(s) 939, 957
BstDEI CTNAG 5 cut(s) 379, 447, 581, 810, 945
BstDSI CCRYGG 1 cut(s) 684
BstF5I GGATG 4 cut(s) 592, 680, 901, 926
BstKTI GATC 3 cut(s) 31, 45, 529
BstMAI GTCTC 1 cut(s) 818
BstMBI GATC 3 cut(s) 28, 42, 526
BstMWI GCNNNNNNNGC 2 cut(s) 449, 542
BstNI CCWGG 1 cut(s) 795
BstNSI RCATGY 1 cut(s) 959
BstSCI CCNGG 1 cut(s) 793
BstV1I GCAGC 3 cut(s) 455, 659, 1006
BstV2I GAAGAC 2 cut(s) 626, 1036
BstXI CCANNNNNNTGG 1 cut(s) 921
Bsu15I ATCGAT 1 cut(s) 659
Bsu36I CCTNAGG 1 cut(s) 581
BsuI GTATCC 2 cut(s) 366, 898
BsuRI GGCC 3 cut(s) 579, 793, 880
BsuTUI ATCGAT 1 cut(s) 659
BtgI CCRYGG 1 cut(s) 684
BtsCI GGATG 4 cut(s) 592, 680, 901, 926
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 3 cut(s) 201, 256, 374
Cac8I GCNNGC 2 cut(s) 939, 957
Cfr13I GGNCC 1 cut(s) 1002
ClaI ATCGAT 1 cut(s) 659
Csp6I GTAC 2 cut(s) 383, 472
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviAII CATG 3 cut(s) 644, 685, 956
CviQI GTAC 2 cut(s) 383, 472
DdeI CTNAG 5 cut(s) 379, 447, 581, 810, 945
DpnI GATC 3 cut(s) 30, 44, 528
DpnII GATC 3 cut(s) 28, 42, 526
EaeI YGGCCR 2 cut(s) 791, 878
Eam1104I CTCTTC 4 cut(s) 183, 612, 816, 984
EarI CTCTTC 4 cut(s) 183, 612, 816, 984
Eco130I CCWWGG 2 cut(s) 684, 998
Eco32I GATATC 2 cut(s) 251, 837
Eco47I GGWCC 1 cut(s) 1002
Eco81I CCTNAGG 1 cut(s) 581
EcoO109I RGGNCCY 1 cut(s) 1002
EcoRII CCWGG 1 cut(s) 793
EcoRV GATATC 2 cut(s) 251, 837
EcoT14I CCWWGG 2 cut(s) 684, 998
ErhI CCWWGG 2 cut(s) 684, 998
FaeI CATG 3 cut(s) 647, 688, 959
FaqI GGGAC 1 cut(s) 323
FatI CATG 3 cut(s) 643, 684, 955
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 4 cut(s) 444, 648, 791, 995
FokI GGATG 4 cut(s) 579, 667, 908, 933
Fsp4HI GCNGC 4 cut(s) 444, 648, 791, 995
FspBI CTAG 1 cut(s) 767
GluI GCNGC 4 cut(s) 444, 648, 791, 995
HaeIII GGCC 3 cut(s) 579, 793, 880
Hin1II CATG 3 cut(s) 647, 688, 959
HincII GTYRAC 1 cut(s) 785
HindII GTYRAC 1 cut(s) 785
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 1 cut(s) 422
HphI GGTGA 2 cut(s) 826, 898
Hpy166II GTNNAC 3 cut(s) 68, 764, 785
Hpy188I TCNGA 4 cut(s) 214, 300, 439, 946
Hpy188III TCNNGA 4 cut(s) 227, 235, 344, 569
Hpy8I GTNNAC 3 cut(s) 68, 764, 785
HpyAV CCTTC 5 cut(s) 56, 119, 491, 616, 895
HpyCH4III ACNGT 3 cut(s) 210, 314, 409
HpyCH4IV ACGT 1 cut(s) 631
HpyCH4V TGCA 8 cut(s) 170, 206, 264, 281, 335, 443, 647, 941
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 542
HpyF3I CTNAG 5 cut(s) 379, 447, 581, 810, 945
HpySE526I ACGT 1 cut(s) 631
Hsp92II CATG 3 cut(s) 647, 688, 959
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 3 cut(s) 28, 42, 526
LguI GCTCTTC 2 cut(s) 183, 984
LmnI GCTCC 2 cut(s) 349, 916
Lsp1109I GCAGC 3 cut(s) 455, 659, 1006
LweI GCATC 4 cut(s) 163, 430, 950, 1037
MaeI CTAG 1 cut(s) 767
MaeII ACGT 1 cut(s) 631
MaeIII GTNAC 1 cut(s) 973
MalI GATC 3 cut(s) 30, 44, 528
MboI GATC 3 cut(s) 28, 42, 526
MboII GAAGA 8 cut(s) 170, 626, 629, 632, 712, 833, 1001, 1036
MfeI CAATTG 2 cut(s) 396, 830
MluCI AATT 6 cut(s) 336, 396, 830, 863, 927, 1037
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 554, 938
MnlI CCTC 7 cut(s) 231, 337, 340, 424, 576, 971, 1015
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 642
MspR9I CCNGG 1 cut(s) 795
MunI CAATTG 2 cut(s) 396, 830
Mva1269I GAATGC 2 cut(s) 283, 757
MvaI CCWGG 1 cut(s) 795
MwoI GCNNNNNNNGC 2 cut(s) 449, 542
NcoI CCATGG 1 cut(s) 684
NdeII GATC 3 cut(s) 28, 42, 526
NlaIII CATG 3 cut(s) 647, 688, 959
NmuCI GTSAC 1 cut(s) 973
NspI RCATGY 1 cut(s) 959
NspV TTCGAA 1 cut(s) 1047
PaeI GCATGC 1 cut(s) 959
PciSI GCTCTTC 2 cut(s) 183, 984
PctI GAATGC 2 cut(s) 283, 757
PdmI GAANNNNTTC 1 cut(s) 140
PflFI GACNNNGTC 1 cut(s) 409
PflMI CCANNNNNTGG 1 cut(s) 876
PkrI GCNGC 4 cut(s) 445, 649, 792, 996
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PpuMI RGGWCCY 1 cut(s) 1002
PshBI ATTAAT 1 cut(s) 339
PsiI TTATAA 1 cut(s) 522
Psp5II RGGWCCY 1 cut(s) 1002
Psp6I CCWGG 1 cut(s) 793
PspGI CCWGG 1 cut(s) 793
PspPI GGNCC 1 cut(s) 1002
PspPPI RGGWCCY 1 cut(s) 1002
PsyI GACNNNGTC 1 cut(s) 409
RsaI GTAC 2 cut(s) 384, 473
RsaNI GTAC 2 cut(s) 383, 472
RseI CAYNNNNRTG 1 cut(s) 642
SapI GCTCTTC 2 cut(s) 183, 984
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 4 cut(s) 444, 648, 791, 995
Sau3AI GATC 3 cut(s) 28, 42, 526
Sau96I GGNCC 1 cut(s) 1002
ScaI AGTACT 1 cut(s) 384
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 795
SfaNI GCATC 4 cut(s) 163, 430, 950, 1037
SfuI TTCGAA 1 cut(s) 1047
SinI GGWCC 1 cut(s) 1002
SmiMI CAYNNNNRTG 1 cut(s) 642
SphI GCATGC 1 cut(s) 959
Sse9I AATT 6 cut(s) 336, 396, 830, 863, 927, 1037
SsiI CCGC 1 cut(s) 790
SspMI CTAG 1 cut(s) 767
StyD4I CCNGG 1 cut(s) 793
StyI CCWWGG 2 cut(s) 684, 998
TaaI ACNGT 3 cut(s) 210, 314, 409
TaiI ACGT 1 cut(s) 634
TaqI TCGA 4 cut(s) 253, 659, 1031, 1047
TasI AATT 6 cut(s) 336, 396, 830, 863, 927, 1037
TatI WGTACW 1 cut(s) 382
TauI GCSGC 1 cut(s) 793
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 3 cut(s) 208, 263, 374
TseFI GTSAC 1 cut(s) 973
TseI GCWGC 3 cut(s) 443, 647, 994
Tsp45I GTSAC 1 cut(s) 973
TspDTI ATGAA 5 cut(s) 581, 598, 626, 632, 720
TspRI CASTG 3 cut(s) 208, 263, 374
Tth111I GACNNNGTC 1 cut(s) 409
Van91I CCANNNNNTGG 1 cut(s) 876
VpaK11BI GGWCC 1 cut(s) 1002
VspI ATTAAT 1 cut(s) 339
XceI RCATGY 1 cut(s) 959
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 1 cut(s) 767
ZrmI AGTACT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.