Rroxscaffold_2G00112130

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000332
Physical Location & Seq
Reverse (-)
37092261 .. 37095963
3703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00112130.1

Sequence Viewer

Length: 291 bp
ATGGGTGATATTCGGACAACACATCTAAGAAATTATGTTGTCCGAATGAGATGCTTCGATGCTTGCCTTCAAGAAATTCTTTTGAGCTCCGGAAAGTTGGACGGTTTGCCTCGTGGCATAATACAAGCTAGGTCGGATTTAGAGCTGAGGCCTTTATGGCTGACTAGTTCAAAGTTAACGGGTGATAACAACGAAGAATTTGGAAAAAAAATTGAGCGATGGGTGGTTGCAGGAAGTGAGGAAGAGGCTCAAGCATTGGCTGATAAAAAATATGAGGGAAAGCAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

96

Amino Acids

10.94

Weight (kDa)

6.58

Isoelectric Point (pI)

60.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 89
AcsI RAATTY 2 cut(s) 75, 197
AgsI TTSAA 2 cut(s) 71, 171
AhlI ACTAGT 1 cut(s) 164
AluBI AGCT 3 cut(s) 87, 128, 145
AluI AGCT 3 cut(s) 87, 128, 145
Alw21I GWGCWC 1 cut(s) 89
Aor13HI TCCGGA 1 cut(s) 89
AoxI GGCC 1 cut(s) 149
ApoI RAATTY 2 cut(s) 75, 197
AsuHPI GGTGA 2 cut(s) 17, 194
BanII GRGCYC 1 cut(s) 89
BauI CACGAG 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 89
BbvCI CCTCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 213
BcgI CGANNNNNNTGC 2 cut(s) 33, 67
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 2 cut(s) 129, 165
BglI GCCNNNNNGGC 1 cut(s) 157
BmsI GCATC 2 cut(s) 41, 49
Bpu10I CCTNAGC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 89
BseAI TCCGGA 1 cut(s) 89
BseMII CTCAG 1 cut(s) 137
BshFI GGCC 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 89
BsiSI CCGG 1 cut(s) 90
BsnI GGCC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 89
Bsp13I TCCGGA 1 cut(s) 89
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 138
BspEI TCCGGA 1 cut(s) 89
BssSI CACGAG 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 26, 146
BstMWI GCNNNNNNNGC 1 cut(s) 157
BsuRI GGCC 1 cut(s) 151
BtgZI GCGATG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 64
CviJI RGCY 7 cut(s) 87, 128, 145, 151, 160, 248, 260
CviKI_1 RGCY 7 cut(s) 87, 128, 145, 151, 160, 248, 260
DdeI CTNAG 2 cut(s) 26, 146
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 87
Eco147I AGGCCT 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 89
FaiI YATR 4 cut(s) 36, 119, 157, 273
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FriOI GRGCYC 1 cut(s) 89
FspBI CTAG 2 cut(s) 129, 165
HaeIII GGCC 1 cut(s) 151
HapII CCGG 1 cut(s) 90
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HpaI GTTAAC 1 cut(s) 177
HpaII CCGG 1 cut(s) 90
HphI GGTGA 2 cut(s) 17, 194
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 3 cut(s) 15, 44, 136
Hpy188III TCNNGA 2 cut(s) 71, 90
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 2 cut(s) 26, 146
Kpn2I TCCGGA 1 cut(s) 89
KspAI GTTAAC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 2 cut(s) 103, 216
LweI GCATC 2 cut(s) 41, 49
MaeI CTAG 2 cut(s) 129, 165
MboII GAAGA 2 cut(s) 206, 254
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 4 cut(s) 31, 75, 197, 210
MmeI TCCRAC 2 cut(s) 78, 114
MnlI CCTC 5 cut(s) 120, 141, 232, 238, 268
MroI TCCGGA 1 cut(s) 89
MseI TTAA 1 cut(s) 176
MspI CCGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 157
PceI AGGCCT 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 89
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 176
SduI GDGCHC 1 cut(s) 89
SetI ASST 4 cut(s) 89, 130, 134, 147
SfaNI GCATC 2 cut(s) 41, 49
SmlI CTYRAG 1 cut(s) 249
SmoI CTYRAG 1 cut(s) 249
SpeI ACTAGT 1 cut(s) 164
Sse9I AATT 4 cut(s) 31, 75, 197, 210
SseBI AGGCCT 1 cut(s) 151
SspMI CTAG 2 cut(s) 129, 165
SstI GAGCTC 1 cut(s) 89
StuI AGGCCT 1 cut(s) 151
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 1 cut(s) 57
TasI AATT 4 cut(s) 31, 75, 197, 210
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
XapI RAATTY 2 cut(s) 75, 197
XspI CTAG 2 cut(s) 129, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.