Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8421977.1

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 887

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8421977.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 340 bp

ggtatgtcttgacaatggcctgaggttacttcatcctttcatgccatatgtgacagaagaactgtggcaacgtctgccgtcaccaggggattacaaaagggcatcatcaattatgatgagcgattacccattgatcatagagagctggaaaaatgaaagggtggagtttgatatgtctcttattgagttggttgtgaagtctctccgatctcttgcccagggaagtcgtgaaaggagacaaggttttgtgctttgtagagcaagtttggggaagcgcgaccgggaggcaatatggaacatcaactggaaattaaaacgcttgctaatgtgtcgtctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

112

Amino Acids

13.27

Weight (kDa)

9.6

Isoelectric Point (pI)

75.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	84
AjnI	CCWGG	2 cut(s)	83, 217
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw26I	GTCTC	3 cut(s)	181, 205, 230
AoxI	GGCC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	73
AxyI	CCTNAGG	1 cut(s)	21
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	2 cut(s)	85, 219
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	3 cut(s)	181, 205, 230
Bme1390I	CCNGG	3 cut(s)	85, 219, 282
BmrFI	CCNGG	3 cut(s)	85, 219, 282
BmsI	GCATC	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	282
BsaJI	CCNNGG	3 cut(s)	84, 217, 218
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	309
Bse21I	CCTNAGG	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	85, 219
BseDI	CCNNGG	3 cut(s)	84, 217, 218
BseGI	GGATG	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	277
Bsh1285I	CGRYCG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	3 cut(s)	181, 205, 230
BsnI	GGCC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	133, 207
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	3 cut(s)	84, 217, 218
BssMI	GATC	2 cut(s)	133, 207
Bst2UI	CCWGG	2 cut(s)	85, 219
Bst4CI	ACNGT	1 cut(s)	64
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	2 cut(s)	136, 210
BstMAI	GTCTC	3 cut(s)	181, 205, 230
BstMBI	GATC	2 cut(s)	133, 207
BstMCI	CGRYCG	1 cut(s)	281
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	2 cut(s)	85, 219
BstSCI	CCNGG	3 cut(s)	83, 217, 280
BstUI	CGCG	1 cut(s)	277
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	321
CfoI	GCGC	1 cut(s)	277
CviAII	CATG	1 cut(s)	41
CviJI	RGCY	2 cut(s)	19, 145
CviKI_1	RGCY	2 cut(s)	19, 145
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	2 cut(s)	135, 209
DpnII	GATC	2 cut(s)	133, 207
Eco81I	CCTNAGG	1 cut(s)	21
EcoRII	CCWGG	2 cut(s)	83, 217
FaeI	CATG	1 cut(s)	44
FaiI	YATR	8 cut(s)	5, 42, 47, 49, 114, 138, 174, 293
FatI	CATG	1 cut(s)	40
FauNDI	CATATG	1 cut(s)	47
FbaI	TGATCA	1 cut(s)	133
FokI	GGATG	1 cut(s)	19
GlaI	GCGC	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	19
HapII	CCGG	1 cut(s)	281
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	1 cut(s)	44
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	207, 339
Hpy188III	TCNNGA	2 cut(s)	9, 228
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4IV	ACGT	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	44
HspAI	GCGC	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	133, 207
LpnPI	CCDG	8 cut(s)	33, 70, 97, 131, 204, 231, 290, 294
LweI	GCATC	1 cut(s)	111
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	3 cut(s)	25, 50, 79
MalI	GATC	2 cut(s)	135, 209
MboI	GATC	2 cut(s)	133, 207
MboII	GAAGA	1 cut(s)	69
MluCI	AATT	2 cut(s)	109, 309
MnlI	CCTC	2 cut(s)	16, 278
MseI	TTAA	1 cut(s)	312
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	3 cut(s)	85, 219, 282
MvaI	CCWGG	2 cut(s)	85, 219
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	74
NciI	CCSGG	1 cut(s)	282
NdeI	CATATG	1 cut(s)	47
NdeII	GATC	2 cut(s)	133, 207
NlaIII	CATG	1 cut(s)	44
NmuCI	GTSAC	2 cut(s)	50, 79
PasI	CCCWGGG	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	83, 217
PspGI	CCWGG	2 cut(s)	83, 217
SaqAI	TTAA	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	133, 207
ScrFI	CCNGG	3 cut(s)	85, 219, 282
SetI	ASST	4 cut(s)	27, 74, 147, 245
SfaNI	GCATC	1 cut(s)	111
Sse9I	AATT	2 cut(s)	109, 309
StyD4I	CCNGG	3 cut(s)	83, 217, 280
TaaI	ACNGT	1 cut(s)	64
TaiI	ACGT	1 cut(s)	74
TasI	AATT	2 cut(s)	109, 309
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseFI	GTSAC	2 cut(s)	50, 79
Tsp45I	GTSAC	2 cut(s)	50, 79
TspDTI	ATGAA	3 cut(s)	21, 29, 169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.