Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004136.1

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

20619 .. 23564

Gene Structure 2946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004136.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2946 bp

atgatcggggctttctttgacaggcgcagtatagacccatgggagagaaagaagagaagggaagaaaaggcattagagaaagagctcaaaaaggacaaagcaaaagctaaagaagccgtcagaaagcttcaggaacaagcaaactctacagacagtggaaagaaggggaagaacaatgtgaagcgttcaaagtccaacgaggataacaatgccaaggacccagagattccatactgcgagaagaaactgttgtctcttcaaatggacaaacactacaatccaagtgctgtggagaagtcaaggtgtgagtggtgggagataaggggcttgtttatggcagatgctaaaagctccaaacctccctttgtgatgttgtatccgcctccgaatgtcacaggtgtgcttcatctaggccatgctctcactgctgctaatggggacactataatacgctggcggcggatgtctggcgacaacaccttgtatcagcctggaatggaccacgctgggatagcaactcaggttgttgtggagaagaagctcatgtccgaaaccgggaaaaccaggcatgatcttggtagagaagagtttgtgaaacaagtttgggagtggaaaaaagaacacggtggcaccattttgcagcagctacgccgtctcggtgcttcattggacttttcgagggagagctttacaatggacgagaaatgctcaaaggctgtggtagaagcctttgtaaggctttataacaaaggacttatctacagggataatcgtatagtcaactgggattgctccctgaaaacagcaatatcagaaattgaggtggactctctggatattcaaggaaggacgttactgaaggttcctggttatgagaacaaggtagagttcggccttttgactacattcgcataccctttggaagaagaggaaggagaggtacttgtggcgactacaagaatagaaaccatgcttggtgatactggtattgctgtgcatccggatgacaaaagatataagcatcttcatggaaaacatgccattcatccgttcagtggaagaagaatccctataatatgtgatgcaaagcttgttgatccagaatttggaactggtgctgtgaagattaccccggcgcatgatcctaatgacttcgaagttggcaagcgccataatcttgagtttatcaacatcttcactgatgatggagaaataaaccagcatggtggagaaaaatttgcagggatgccacgttataaagcgcgagacttggtgactgaagcactcaaggagaaggggctgtataggaaaactgaggttaatgagatgaaaatcaagacttgttctagaagcaacgatgttgtggagcccatgatgaagcctcagtggtatgtcaaatgctctggtatggcgcatgaagctctcattagcgtggaggaggatgaaagtaacatgaagaagctagagatcatccccaaagagtatactgatcactggaagagatggcttgagaacattcgtgactggtgcatctcgaggcaactttggtggggtcaccgtattccggcatggtatgctgtttttgaggatgataagcctgaggattttggactgttggatgacagatgggtggttgcaagaaacttggaagaggctagggcagtggctgctgaaaaatttgggcaagaaaagaagtatgaattaagtgagtctactcaggaccctgatgtgcttgacacttggttttcttctgctctcttcccattgtctgtattcggctggccagatgatacagaagactttaaggcattctatccgtcttcacttcttgaaactgggcatgacattctctttttctgggttgctcgcatggtaatgcttggaattactttgggtggtgaagatggtacaggaggaaatctgctgccttttccaaaggtatatctgcacccaatgattcgtgatgcacaaggacgaaaaatgtcaaagtcgttggggaatgtgattgatccagttgatgtaatcaatggtattacccttgaaggtttacatgagaagctttcaaaaggaaacttggacaaaaaggaaatagaagtagccaaagaggggcaaaagaagtcattccctaatggtatcaaggaatgtggtgcagatgctcttcgttttgctctcattgactacactgcacagtctgaaaatataaatctggacatcaagagggtggtgggatatcgacactggtgcaacaaactatggaatgcagtaaggtttgctattctaacacttggggacggttatgttccaccctcaaatgcaattaatccagaggagcttccatttatttgtcagtggatactctcagtactaaacaaaacaattgataagactgtgtcctcattggagtcctataagttatctgatgcagctaaggctgtatatagttggtggcagtaccagttatgcgatatttttattgaaggtatcaagcctttcctttcttataatgatccaacagcagagtttgcgaaacacacgctatggttatgtcttgataatggcctgaggttgcttcatccttttatgcccttcatcacagaagagttgtggcaacgtcttcatcttcatgcagcaccatcatcaataatggtaagtgaatatccatccatggtagattgctggaagaacgaaaaagtagagaatgagatggataatcttgttatgtttgttgtgaatgctctgcgttcactagcaaaaggaagtcgtcaacggcggccaggttttgtgctatctcaggtgaaagaagagagacaattgatatccactcaatctgtcattatttctcaattaaccaatgtgtggccgttggtgataatggatgagaaggatactgctccaactggatgggcagtttcaaaaactaaaaaattttctttttatctaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

981

Amino Acids

112.37

Weight (kDa)

6.46

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	744, 1257, 2502
AccB1I	GGYRCC	1 cut(s)	629
AccB7I	CCANNNNNTGG	2 cut(s)	1106, 2856
AccI	GTMKAC	2 cut(s)	1484, 1712
AccII	CGCG	1 cut(s)	1264
AccIII	TCCGGA	1 cut(s)	1000
AciI	CCGC	4 cut(s)	380, 457, 460, 2770
AclWI	GGATC	4 cut(s)	1091, 1136, 2003, 2501
AcoI	YGGCCR	3 cut(s)	1781, 2771, 2858
AcsI	RAATTY	4 cut(s)	1103, 1235, 1676, 2924
AcuI	CTGAAG	3 cut(s)	113, 878, 1299
AfaI	GTAC	4 cut(s)	942, 1909, 2364, 2453
AfiI	CCNNNNNNNGG	7 cut(s)	555, 735, 1055, 1106, 1564, 2106, 2856
AgsI	TTSAA	8 cut(s)	189, 260, 842, 1832, 2042, 2064, 2477, 2913
AjnI	CCWGG	4 cut(s)	490, 563, 865, 2773
AjuI	GAANNNNNNNTTGG	2 cut(s)	957, 989
AleI	CACNNNNGTG	1 cut(s)	398
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	4 cut(s)	258, 659, 1260, 2800
AlwI	GGATC	4 cut(s)	1091, 1136, 2003, 2501
AlwNI	CAGNNNCTG	1 cut(s)	1667
Ama87I	CYCGRG	1 cut(s)	1534
Aor13HI	TCCGGA	1 cut(s)	1000
AoxI	GGCC	6 cut(s)	412, 892, 1781, 2557, 2771, 2858
ApeKI	GCWGC	7 cut(s)	428, 640, 643, 1667, 1924, 2423, 2627
ApoI	RAATTY	4 cut(s)	1103, 1235, 1676, 2924
AseI	ATTAAT	1 cut(s)	2319
Asp700I	GAANNNNTTC	1 cut(s)	2120
AspLEI	GCGC	5 cut(s)	27, 1138, 1170, 1264, 1414
AspS9I	GGNCC	3 cut(s)	217, 499, 1720
AsuC2I	CCSGG	2 cut(s)	556, 1133
AsuHPI	GGTGA	6 cut(s)	989, 1285, 1547, 1910, 2806, 2878
AsuII	TTCGAA	1 cut(s)	1155
AvaI	CYCGRG	1 cut(s)	1534
AvaII	GGWCC	3 cut(s)	217, 499, 1720
AxyI	CCTNAGG	2 cut(s)	1599, 2561
BalI	TGGCCA	1 cut(s)	1783
BanI	GGYRCC	1 cut(s)	629
BanII	GRGCYC	2 cut(s)	87, 1371
BarI	GAAGNNNNNNTAC	2 cut(s)	924, 956
BbsI	GAAGAC	3 cut(s)	1803, 1812, 2606
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	7 cut(s)	415, 652, 655, 1654, 1911, 2435, 2639
BccI	CCATC	8 cut(s)	1199, 1497, 1620, 1898, 2641, 2668, 2698, 2895
BceAI	ACGGC	4 cut(s)	101, 636, 2783, 2845
BcgI	CGANNNNNNTGC	2 cut(s)	2223, 2257
BciT130I	CCWGG	4 cut(s)	492, 565, 867, 2775
BciVI	GTATCC	3 cut(s)	387, 2346, 2878
BclI	TGATCA	1 cut(s)	1489
BcnI	CCSGG	2 cut(s)	556, 1133
BcoDI	GTCTC	4 cut(s)	258, 659, 1260, 2800
BfaI	CTAG	5 cut(s)	410, 1347, 1463, 1656, 2747
BfmI	CTRYAG	2 cut(s)	147, 760
BfoI	RGCGCY	1 cut(s)	1171
BfuI	GTATCC	3 cut(s)	387, 2346, 2878
BisI	GCNGC	9 cut(s)	429, 458, 641, 644, 1668, 1925, 2424, 2628, 2771
BlsI	GCNGC	9 cut(s)	430, 459, 642, 645, 1669, 1926, 2425, 2629, 2772
BmcAI	AGTACT	1 cut(s)	2364
Bme1390I	CCNGG	6 cut(s)	492, 556, 565, 867, 1133, 2775
Bme18I	GGWCC	3 cut(s)	217, 499, 1720
BmeT110I	CYCGRG	1 cut(s)	1534
BmgT120I	GGNCC	3 cut(s)	217, 499, 1720
BmiI	GGNNCC	5 cut(s)	219, 631, 864, 1368, 1722
BmrFI	CCNGG	6 cut(s)	492, 556, 565, 867, 1133, 2775
BmrI	ACTGGG	2 cut(s)	793, 1845
BmsI	GCATC	9 cut(s)	331, 1006, 1030, 1072, 1236, 1539, 1954, 2143, 2410
BmuI	ACTGGG	2 cut(s)	793, 1845
BpiI	GAAGAC	3 cut(s)	1803, 1812, 2606
BplI	GAGNNNNNCTC	4 cut(s)	692, 724, 812, 844
Bpu10I	CCTNAGC	1 cut(s)	2427
Bpu14I	TTCGAA	1 cut(s)	1155
BpuEI	CTTGAG	3 cut(s)	1199, 1271, 1529
BpuMI	CCSGG	2 cut(s)	556, 1133
BsaBI	GATNNNNATC	1 cut(s)	1331
BsaJI	CCNNGG	4 cut(s)	38, 213, 1131, 2664
BsaWI	WCCGGW	1 cut(s)	1000
Bsc4I	CCNNNNNNNGG	7 cut(s)	555, 735, 1055, 1106, 1564, 2106, 2856
Bse21I	CCTNAGG	2 cut(s)	1599, 2561
Bse8I	GATNNNNATC	1 cut(s)	1331
BseAI	TCCGGA	1 cut(s)	1000
BseBI	CCWGG	4 cut(s)	492, 565, 867, 2775
BseDI	CCNNGG	4 cut(s)	38, 213, 1131, 2664
BseJI	GATNNNNATC	1 cut(s)	1331
BseLI	CCNNNNNNNGG	7 cut(s)	555, 735, 1055, 1106, 1564, 2106, 2856
BseMII	CTCAG	8 cut(s)	533, 1305, 1397, 1590, 1730, 2373, 2552, 2804
BseRI	GAGGAG	2 cut(s)	1451, 2342
BseXI	GCAGC	7 cut(s)	415, 652, 655, 1654, 1911, 2435, 2639
BseYI	CCCAGC	1 cut(s)	506
BsgI	GTGCAG	3 cut(s)	1931, 2169, 2169
Bsh1236I	CGCG	1 cut(s)	1264
BshFI	GGCC	6 cut(s)	414, 894, 1783, 2559, 2773, 2860
BshNI	GGYRCC	1 cut(s)	629
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	1534
BsiSI	CCGG	4 cut(s)	555, 1001, 1133, 1565
BslFI	GGGAC	2 cut(s)	452, 2303
BslI	CCNNNNNNNGG	7 cut(s)	555, 735, 1055, 1106, 1564, 2106, 2856
BsmAI	GTCTC	4 cut(s)	258, 659, 1260, 2800
BsmBI	CGTCTC	1 cut(s)	659
BsmFI	GGGAC	2 cut(s)	452, 2303
BsmI	GAATGC	3 cut(s)	1808, 2263, 2737
BsnI	GGCC	6 cut(s)	414, 894, 1783, 2559, 2773, 2860
BsoBI	CYCGRG	1 cut(s)	1534
Bsp119I	TTCGAA	1 cut(s)	1155
Bsp1286I	GDGCHC	2 cut(s)	87, 1371
Bsp13I	TCCGGA	1 cut(s)	1000
Bsp143I	GATC	8 cut(s)	3, 571, 1096, 1141, 1467, 1489, 2008, 2506
Bsp19I	CCATGG	2 cut(s)	38, 2664
BspACI	CCGC	4 cut(s)	380, 457, 460, 2770
BspANI	GGCC	6 cut(s)	414, 894, 1783, 2559, 2773, 2860
BspCNI	CTCAG	8 cut(s)	532, 1306, 1396, 1591, 1729, 2372, 2553, 2803
BspEI	TCCGGA	1 cut(s)	1000
BspFNI	CGCG	1 cut(s)	1264
BspLI	GGNNCC	5 cut(s)	219, 631, 864, 1368, 1722
BspPI	GGATC	4 cut(s)	1091, 1136, 2003, 2501
BspQI	GCTCTTC	1 cut(s)	2163
BspT104I	TTCGAA	1 cut(s)	1155
BspT107I	GGYRCC	1 cut(s)	629
BssECI	CCNNGG	4 cut(s)	38, 213, 1131, 2664
BssMI	GATC	8 cut(s)	3, 571, 1096, 1141, 1467, 1489, 2008, 2506
BssNAI	GTATAC	1 cut(s)	1485
BssT1I	CCWWGG	3 cut(s)	38, 213, 2664
Bst1107I	GTATAC	1 cut(s)	1485
Bst2UI	CCWGG	4 cut(s)	492, 565, 867, 2775
Bst4CI	ACNGT	8 cut(s)	155, 249, 626, 1559, 1614, 2190, 2294, 2389
BstAPI	GCANNNNNTGC	3 cut(s)	1574, 1667, 2522
BstBI	TTCGAA	1 cut(s)	1155
BstC8I	GCNNGC	4 cut(s)	455, 1166, 1781, 1867
BstDEI	CTNAG	9 cut(s)	519, 1314, 1383, 1599, 1716, 2359, 2427, 2561, 2790
BstDSI	CCRYGG	2 cut(s)	38, 2664
BstEII	GGTNACC	1 cut(s)	1553
BstENI	CCTNNNNNAGG	1 cut(s)	733
BstFNI	CGCG	1 cut(s)	1264
BstH2I	RGCGCY	1 cut(s)	1171
BstHHI	GCGC	5 cut(s)	27, 1138, 1170, 1264, 1414
BstKTI	GATC	8 cut(s)	6, 574, 1099, 1144, 1470, 1492, 2011, 2509
BstMAI	GTCTC	4 cut(s)	258, 659, 1260, 2800
BstMBI	GATC	8 cut(s)	3, 571, 1096, 1141, 1467, 1489, 2008, 2506
BstMWI	GCNNNNNNNGC	8 cut(s)	113, 425, 512, 1418, 1574, 1667, 2429, 2522
BstNI	CCWGG	4 cut(s)	492, 565, 867, 2775
BstNSI	RCATGY	1 cut(s)	1040
BstPI	GGTNACC	1 cut(s)	1553
BstSCI	CCNGG	6 cut(s)	490, 554, 563, 865, 1131, 2773
BstSFI	CTRYAG	2 cut(s)	147, 760
BstUI	CGCG	1 cut(s)	1264
BstV1I	GCAGC	7 cut(s)	415, 652, 655, 1654, 1911, 2435, 2639
BstV2I	GAAGAC	3 cut(s)	1803, 1812, 2606
BstXI	CCANNNNNNTGG	2 cut(s)	1226, 2901
BstZ17I	GTATAC	1 cut(s)	1485
Bsu36I	CCTNAGG	2 cut(s)	1599, 2561
BsuI	GTATCC	3 cut(s)	387, 2346, 2878
BsuRI	GGCC	6 cut(s)	414, 894, 1783, 2559, 2773, 2860
BtgI	CCRYGG	2 cut(s)	38, 2664
BtsI	GCAGTG	3 cut(s)	423, 1668, 2181
Cac8I	GCNNGC	4 cut(s)	455, 1166, 1781, 1867
CaiI	CAGNNNCTG	1 cut(s)	1667
CfoI	GCGC	5 cut(s)	27, 1138, 1170, 1264, 1414
Cfr13I	GGNCC	3 cut(s)	217, 499, 1720
Csp6I	GTAC	4 cut(s)	941, 1908, 2363, 2452
CspCI	CAANNNNNGTGG	8 cut(s)	270, 305, 699, 734, 1529, 1564, 2125, 2160
CviQI	GTAC	4 cut(s)	941, 1908, 2363, 2452
DdeI	CTNAG	9 cut(s)	519, 1314, 1383, 1599, 1716, 2359, 2427, 2561, 2790
DpnI	GATC	8 cut(s)	5, 573, 1098, 1143, 1469, 1491, 2010, 2508
DpnII	GATC	8 cut(s)	3, 571, 1096, 1141, 1467, 1489, 2008, 2506
EaeI	YGGCCR	3 cut(s)	1781, 2771, 2858
EciI	GGCGGA	2 cut(s)	369, 475
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	3 cut(s)	38, 213, 2664
Eco24I	GRGCYC	2 cut(s)	87, 1371
Eco32I	GATATC	2 cut(s)	2231, 2817
Eco47I	GGWCC	3 cut(s)	217, 499, 1720
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	3 cut(s)	113, 878, 1299
Eco81I	CCTNAGG	2 cut(s)	1599, 2561
Eco88I	CYCGRG	1 cut(s)	1534
Eco91I	GGTNACC	1 cut(s)	1553
EcoICRI	GAGCTC	1 cut(s)	85
EcoNI	CCTNNNNNAGG	1 cut(s)	733
EcoO109I	RGGNCCY	2 cut(s)	217, 1720
EcoO65I	GGTNACC	1 cut(s)	1553
EcoRII	CCWGG	4 cut(s)	490, 563, 865, 2773
EcoRV	GATATC	2 cut(s)	2231, 2817
EcoT14I	CCWWGG	3 cut(s)	38, 213, 2664
EcoT38I	GRGCYC	2 cut(s)	87, 1371
ErhI	CCWWGG	3 cut(s)	38, 213, 2664
Esp3I	CGTCTC	1 cut(s)	659
FaqI	GGGAC	2 cut(s)	452, 2303
FbaI	TGATCA	1 cut(s)	1489
FblI	GTMKAC	2 cut(s)	1484, 1712
Fnu4HI	GCNGC	9 cut(s)	429, 458, 641, 644, 1668, 1925, 2424, 2628, 2771
FriOI	GRGCYC	2 cut(s)	87, 1371
Fsp4HI	GCNGC	9 cut(s)	429, 458, 641, 644, 1668, 1925, 2424, 2628, 2771
FspBI	CTAG	5 cut(s)	410, 1347, 1463, 1656, 2747
GlaI	GCGC	5 cut(s)	26, 1137, 1169, 1263, 1413
GluI	GCNGC	9 cut(s)	429, 458, 641, 644, 1668, 1925, 2424, 2628, 2771
GsaI	CCCAGC	1 cut(s)	510
HaeII	RGCGCY	1 cut(s)	1171
HaeIII	GGCC	6 cut(s)	414, 894, 1783, 2559, 2773, 2860
HapII	CCGG	4 cut(s)	555, 1001, 1133, 1565
HhaI	GCGC	5 cut(s)	27, 1138, 1170, 1264, 1414
Hin6I	GCGC	5 cut(s)	25, 1136, 1168, 1262, 1412
HinP1I	GCGC	5 cut(s)	25, 1136, 1168, 1262, 1412
HincII	GTYRAC	2 cut(s)	781, 2765
HindII	GTYRAC	2 cut(s)	781, 2765
HindIII	AAGCTT	3 cut(s)	125, 1088, 2057
HinfI	GANTC	6 cut(s)	226, 827, 1065, 1709, 1957, 2402
HpaII	CCGG	4 cut(s)	555, 1001, 1133, 1565
HphI	GGTGA	6 cut(s)	989, 1285, 1547, 1910, 2806, 2878
Hpy166II	GTNNAC	7 cut(s)	781, 826, 1485, 1713, 2048, 2744, 2765
Hpy188I	TCNGA	6 cut(s)	122, 387, 550, 814, 2194, 2419
Hpy8I	GTNNAC	7 cut(s)	781, 826, 1485, 1713, 2048, 2744, 2765
HpyCH4III	ACNGT	8 cut(s)	155, 249, 626, 1559, 1614, 2190, 2294, 2389
HpyCH4IV	ACGT	3 cut(s)	851, 1252, 2611
HpyF10VI	GCNNNNNNNGC	8 cut(s)	113, 425, 512, 1418, 1574, 1667, 2429, 2522
HpyF3I	CTNAG	9 cut(s)	519, 1314, 1383, 1599, 1716, 2359, 2427, 2561, 2790
HpySE526I	ACGT	3 cut(s)	851, 1252, 2611
HspAI	GCGC	5 cut(s)	25, 1136, 1168, 1262, 1412
Kpn2I	TCCGGA	1 cut(s)	1000
Ksp22I	TGATCA	1 cut(s)	1489
Kzo9I	GATC	8 cut(s)	3, 571, 1096, 1141, 1467, 1489, 2008, 2506
LguI	GCTCTTC	1 cut(s)	2163
LmnI	GCTCC	5 cut(s)	356, 797, 1366, 2329, 2896
Lsp1109I	GCAGC	7 cut(s)	415, 652, 655, 1654, 1911, 2435, 2639
LweI	GCATC	9 cut(s)	331, 1006, 1030, 1072, 1236, 1539, 1954, 2143, 2410
MaeI	CTAG	5 cut(s)	410, 1347, 1463, 1656, 2747
MaeII	ACGT	3 cut(s)	851, 1252, 2611
MaeIII	GTNAC	6 cut(s)	391, 852, 1273, 1448, 1520, 1553
MalI	GATC	8 cut(s)	5, 573, 1098, 1143, 1469, 1491, 2010, 2508
MboI	GATC	8 cut(s)	3, 571, 1096, 1141, 1467, 1489, 2008, 2506
MfeI	CAATTG	2 cut(s)	2376, 2810
MhlI	GDGCHC	2 cut(s)	87, 1371
MlsI	TGGCCA	1 cut(s)	1783
MluNI	TGGCCA	1 cut(s)	1783
MlyI	GAGTC	3 cut(s)	821, 1718, 2411
MmeI	TCCRAC	4 cut(s)	219, 1596, 2534, 2918
Mox20I	TGGCCA	1 cut(s)	1783
MroI	TCCGGA	1 cut(s)	1000
MroXI	GAANNNNTTC	1 cut(s)	2120
MscI	TGGCCA	1 cut(s)	1783
MseI	TTAA	6 cut(s)	1320, 1703, 1803, 2319, 2846, 2944
MslI	CAYNNNNRTG	6 cut(s)	398, 1002, 1026, 1430, 1874, 2622
Msp20I	TGGCCA	1 cut(s)	1783
MspI	CCGG	4 cut(s)	555, 1001, 1133, 1565
MspR9I	CCNGG	6 cut(s)	492, 556, 565, 867, 1133, 2775
MunI	CAATTG	2 cut(s)	2376, 2810
Mva1269I	GAATGC	3 cut(s)	1808, 2263, 2737
MvaI	CCWGG	4 cut(s)	492, 565, 867, 2775
MvnI	CGCG	1 cut(s)	1264
MwoI	GCNNNNNNNGC	8 cut(s)	113, 425, 512, 1418, 1574, 1667, 2429, 2522
NciI	CCSGG	2 cut(s)	556, 1133
NcoI	CCATGG	2 cut(s)	38, 2664
NdeII	GATC	8 cut(s)	3, 571, 1096, 1141, 1467, 1489, 2008, 2506
NlaIV	GGNNCC	5 cut(s)	219, 631, 864, 1368, 1722
NmuCI	GTSAC	4 cut(s)	391, 1273, 1520, 1553
NspI	RCATGY	1 cut(s)	1040
NspV	TTCGAA	1 cut(s)	1155
OliI	CACNNNNGTG	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	1534
PciSI	GCTCTTC	1 cut(s)	2163
PctI	GAATGC	3 cut(s)	1808, 2263, 2737
PdmI	GAANNNNTTC	1 cut(s)	2120
PfeI	GAWTC	3 cut(s)	226, 1065, 1957
PflFI	GACNNNGTC	1 cut(s)	2389
PflMI	CCANNNNNTGG	2 cut(s)	1106, 2856
PkrI	GCNGC	9 cut(s)	430, 459, 642, 645, 1669, 1926, 2425, 2629, 2772
PleI	GAGTC	3 cut(s)	821, 1717, 2410
PpsI	GAGTC	3 cut(s)	821, 1717, 2410
PpuMI	RGGWCCY	2 cut(s)	217, 1720
PshBI	ATTAAT	1 cut(s)	2319
PsiI	TTATAA	3 cut(s)	744, 1257, 2502
Psp124BI	GAGCTC	1 cut(s)	87
Psp5II	RGGWCCY	2 cut(s)	217, 1720
Psp6I	CCWGG	4 cut(s)	490, 563, 865, 2773
PspEI	GGTNACC	1 cut(s)	1553
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	4 cut(s)	490, 563, 865, 2773
PspN4I	GGNNCC	5 cut(s)	219, 631, 864, 1368, 1722
PspPI	GGNCC	3 cut(s)	217, 499, 1720
PspPPI	RGGWCCY	2 cut(s)	217, 1720
PstNI	CAGNNNCTG	1 cut(s)	1667
PsyI	GACNNNGTC	1 cut(s)	2389
RsaI	GTAC	4 cut(s)	942, 1909, 2364, 2453
RsaNI	GTAC	4 cut(s)	941, 1908, 2363, 2452
RseI	CAYNNNNRTG	6 cut(s)	398, 1002, 1026, 1430, 1874, 2622
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	2163
SaqAI	TTAA	6 cut(s)	1320, 1703, 1803, 2319, 2846, 2944
SatI	GCNGC	9 cut(s)	429, 458, 641, 644, 1668, 1925, 2424, 2628, 2771
Sau3AI	GATC	8 cut(s)	3, 571, 1096, 1141, 1467, 1489, 2008, 2506
Sau96I	GGNCC	3 cut(s)	217, 499, 1720
ScaI	AGTACT	1 cut(s)	2364
SchI	GAGTC	3 cut(s)	821, 1718, 2411
ScrFI	CCNGG	6 cut(s)	492, 556, 565, 867, 1133, 2775
SduI	GDGCHC	2 cut(s)	87, 1371
SfaNI	GCATC	9 cut(s)	331, 1006, 1030, 1072, 1236, 1539, 1954, 2143, 2410
SfcI	CTRYAG	2 cut(s)	147, 760
Sfr274I	CTCGAG	1 cut(s)	1534
SfuI	TTCGAA	1 cut(s)	1155
SinI	GGWCC	3 cut(s)	217, 499, 1720
SlaI	CTCGAG	1 cut(s)	1534
SmiMI	CAYNNNNRTG	6 cut(s)	398, 1002, 1026, 1430, 1874, 2622
SmlI	CTYRAG	4 cut(s)	1178, 1286, 1508, 1534
SmoI	CTYRAG	4 cut(s)	1178, 1286, 1508, 1534
SsiI	CCGC	4 cut(s)	380, 457, 460, 2770
SspMI	CTAG	5 cut(s)	410, 1347, 1463, 1656, 2747
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	6 cut(s)	490, 554, 563, 865, 1131, 2773
StyI	CCWWGG	3 cut(s)	38, 213, 2664
TaaI	ACNGT	8 cut(s)	155, 249, 626, 1559, 1614, 2190, 2294, 2389
TaiI	ACGT	3 cut(s)	854, 1255, 2614
TaqI	TCGA	4 cut(s)	677, 1155, 1535, 2233
TatI	WGTACW	1 cut(s)	2362
TauI	GCSGC	2 cut(s)	460, 2773
TfiI	GAWTC	3 cut(s)	226, 1065, 1957
Tru1I	TTAA	6 cut(s)	1320, 1703, 1803, 2319, 2846, 2944
Tru9I	TTAA	6 cut(s)	1320, 1703, 1803, 2319, 2846, 2944
TseFI	GTSAC	4 cut(s)	391, 1273, 1520, 1553
TseI	GCWGC	7 cut(s)	428, 640, 643, 1667, 1924, 2423, 2627
Tsp45I	GTSAC	4 cut(s)	391, 1273, 1520, 1553
TspGWI	ACGGA	2 cut(s)	1038, 1806
Tth111I	GACNNNGTC	1 cut(s)	2389
Van91I	CCANNNNNTGG	2 cut(s)	1106, 2856
VpaK11BI	GGWCC	3 cut(s)	217, 499, 1720
VspI	ATTAAT	1 cut(s)	2319
XagI	CCTNNNNNAGG	1 cut(s)	733
XapI	RAATTY	4 cut(s)	1103, 1235, 1676, 2924
XbaI	TCTAGA	1 cut(s)	1346
XceI	RCATGY	1 cut(s)	1040
XhoI	CTCGAG	1 cut(s)	1534
XmiI	GTMKAC	2 cut(s)	1484, 1712
XmnI	GAANNNNTTC	1 cut(s)	2120
XspI	CTAG	5 cut(s)	410, 1347, 1463, 1656, 2747
ZrmI	AGTACT	1 cut(s)	2364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.