Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

24761724 .. 24762218

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1107900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCATTTGTCCGGGGATTGTCTTCTGGACCGTTGAGGCAGTGCTGTGACTCCATCAAGCCTTTGAACGCGATTGCCAGACATGGTGAAGGTGGTCCGAAAATGATCTGCGAATGCATCGCTATAGAGTGCTGGACAAACAAAAGGGTGGAGTCTGAGATGAACCTTGTAGAGTCTGTTGTGAAATCTCTCCGTTCACTTGCGAAAGAAAGTCGTGAAAGGCATCCAGCATTTGTGATTTTTTGGAAGGATTTGGATTGGGAGATAATTCGCAGCCATCAACTGGAGATCAAAGCTCTTGCGCATTTGTCATCTTTGACGGTATTCGGTAGGAGTGACAGCAGCTTTTGCACCCCTACCGAATCCACTGAATATGCGATGTCTGATGTAAACGAAAATCTTTTGGTTTTCCCAAATTTGCAAGAGCGGCAAACCCCAAAAAATCCGCAAGAAGATGAAAAAAGACGCACTCGAACTGGAAAAAGCTATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

165

Amino Acids

18.71

Weight (kDa)

7.59

Isoelectric Point (pI)

75.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	303
AccB7I	CCANNNNNTGG	1 cut(s)	283
AccBSI	CCGCTC	1 cut(s)	427
AccII	CGCG	1 cut(s)	71
AciI	CCGC	2 cut(s)	427, 446
AcsI	RAATTY	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	67
AluBI	AGCT	3 cut(s)	296, 345, 486
AluI	AGCT	3 cut(s)	296, 345, 486
ApeKI	GCWGC	2 cut(s)	273, 342
ApoI	RAATTY	1 cut(s)	415
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	29, 95
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	98
AvaII	GGWCC	2 cut(s)	29, 95
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	285, 354
BccI	CCATC	2 cut(s)	62, 285
BcnI	CCSGG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	123
BisI	GCNGC	3 cut(s)	274, 343, 428
BlsI	GCNGC	3 cut(s)	275, 344, 429
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	2 cut(s)	29, 95
BmgT120I	GGNCC	2 cut(s)	29, 95
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	2 cut(s)	126, 232
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	288, 481
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	2 cut(s)	288, 481
BseXI	GCAGC	2 cut(s)	285, 354
Bsh1236I	CGCG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	13
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	105, 288
BspACI	CCGC	2 cut(s)	427, 446
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	288, 481
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	2 cut(s)	105, 288
Bst4CI	ACNGT	2 cut(s)	33, 322
BstAPI	GCANNNNNTGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	2 cut(s)	108, 291
BstMBI	GATC	2 cut(s)	105, 288
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 427
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	285, 354
BstV2I	GAAGAC	1 cut(s)	15
BtgZI	GCGATG	2 cut(s)	103, 392
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	47, 366
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	29, 95
CseI	GACGC	1 cut(s)	474
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	5 cut(s)	61, 276, 296, 345, 486
CviKI_1	RGCY	5 cut(s)	61, 276, 296, 345, 486
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	2 cut(s)	107, 290
DpnII	GATC	2 cut(s)	105, 288
Eco47I	GGWCC	2 cut(s)	29, 95
EcoT22I	ATGCAT	1 cut(s)	119
FaeI	CATG	1 cut(s)	86
FaiI	YATR	3 cut(s)	84, 125, 375
FatI	CATG	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	274, 343, 428
FokI	GGATG	1 cut(s)	210
Fsp4HI	GCNGC	3 cut(s)	274, 343, 428
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	3 cut(s)	274, 343, 428
GsuI	CTGGAG	1 cut(s)	305
HapII	CCGG	1 cut(s)	13
HgaI	GACGC	1 cut(s)	474
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HinfI	GANTC	4 cut(s)	50, 152, 173, 362
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	197, 391
Hpy188I	TCNGA	3 cut(s)	99, 157, 385
Hpy188III	TCNNGA	2 cut(s)	27, 215
Hpy8I	GTNNAC	2 cut(s)	197, 391
HpyAV	CCTTC	2 cut(s)	83, 241
HpyCH4III	ACNGT	2 cut(s)	33, 322
HpyCH4V	TGCA	3 cut(s)	117, 351, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 427
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	86
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	105, 288
LpnPI	CCDG	7 cut(s)	12, 26, 91, 118, 240, 269, 462
Lsp1109I	GCAGC	2 cut(s)	285, 354
LweI	GCATC	2 cut(s)	126, 232
MaeIII	GTNAC	2 cut(s)	47, 335
MalI	GATC	2 cut(s)	107, 290
MbiI	CCGCTC	1 cut(s)	427
MboI	GATC	2 cut(s)	105, 288
MboII	GAAGA	2 cut(s)	15, 464
MluCI	AATT	2 cut(s)	267, 415
MlyI	GAGTC	3 cut(s)	44, 161, 182
MnlI	CCTC	1 cut(s)	30
Mph1103I	ATGCAT	1 cut(s)	119
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	14
Mva1269I	GAATGC	1 cut(s)	119
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	348, 427
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	2 cut(s)	105, 288
NlaIII	CATG	1 cut(s)	86
NmuCI	GTSAC	2 cut(s)	47, 335
NsbI	TGCGCA	1 cut(s)	303
NsiI	ATGCAT	1 cut(s)	119
PctI	GAATGC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	283
PkrI	GCNGC	3 cut(s)	275, 344, 429
PleI	GAGTC	3 cut(s)	44, 160, 181
PpsI	GAGTC	3 cut(s)	44, 160, 181
PspPI	GGNCC	2 cut(s)	29, 95
SatI	GCNGC	3 cut(s)	274, 343, 428
Sau3AI	GATC	2 cut(s)	105, 288
Sau96I	GGNCC	2 cut(s)	29, 95
SchI	GAGTC	3 cut(s)	44, 161, 182
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	5 cut(s)	94, 168, 298, 347, 488
SfaNI	GCATC	2 cut(s)	126, 232
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	2 cut(s)	29, 95
Sse9I	AATT	2 cut(s)	267, 415
SsiI	CCGC	2 cut(s)	427, 446
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	33, 322
TaqI	TCGA	1 cut(s)	472
TasI	AATT	2 cut(s)	267, 415
TauI	GCSGC	1 cut(s)	430
TfiI	GAWTC	1 cut(s)	362
TscAI	CASTG	2 cut(s)	47, 373
TseFI	GTSAC	2 cut(s)	47, 335
TseI	GCWGC	2 cut(s)	273, 342
Tsp45I	GTSAC	2 cut(s)	47, 335
TspDTI	ATGAA	2 cut(s)	176, 471
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	47, 373
Van91I	CCANNNNNTGG	1 cut(s)	283
VpaK11BI	GGWCC	2 cut(s)	29, 95
XapI	RAATTY	1 cut(s)	415
Zsp2I	ATGCAT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.