RLG00000001360

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
14642273 .. 14685998
43726 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001360

Sequence Viewer

Length: 3381 bp
ATGCTTGGTGATACTGCTATTGTAGTGCATCCTGATGTCGAAAGACACAAGCATCTTCATGAAAAATATGCAATCCTTCCATTTAACGGAAGAAGGATTCCTATAATAAGTGATGGAATTCTTGTTGATCCAGAGTTTGGGACTGGTGCTGTCAAGATTACCCCGGCCCATGATCCTAATGACTTTATGGTTGGGAGGCACCATAATCTTGAGTTTATCAACATCTTTACTGATGATGGAAAAATAAACCAGTATGGGGGAGCATTTGAAGGATGCCATGCTTCAGAGCCCGAGAGGCTGGCCTCTTCAAAGAAACTAAGACCAATGAGATGTGTCTTAGAATTTGCCCTAGAAGTAAAGATGTTGTACGTGGAGCCTATGATAAAGATCCAATGGTACATTAAATGCAGCGATATTGGAAATGAAGCTCTCAATGCTGTCCCTGATGATGAAAATAGGAAGCTGGAGATTATCTCAAGACAGTATACTGCTGAGTGGAAGAGGTGCTCATTTTTACCTTATTGTGTTATGGACATCACAGTCATGGACGACAATTCATCGAAGAAGAAGAAGAAGAAAAAGGAGGAAAAGGCAAGATTTCACGAACTGAAAAAGCAAAAGGCTTTAGAGAAAGCTTCCAAGCTTCAGGCACAAAAAGCTAATCCTACGAACATTGAAAAGAAGAAACTTCGCAACGAGGACGTCCGCGACAATGCCAACCCTCCGACCCCAGTCGGCGAGAAGAAACGATTGTCTCCTCAAATGGCTAAACACTACAGTCCAAGTGATGTAGAGAAGGCGTGGTACGATTGGTGGGAGATACAAGGCTACTTTGTCGCAGATGCTAAAAGTCACAAACCTCCATTTGCCATGCCCCTGCCGCCTCCCAATGTGACTGGTGCCCTTCATTTAGGCCATGCTCTTACTGCTTCTATTCAGGACACTATTATTCGTTGGCGGAGAATGTCAGGTTATAATACCTTGTGGCCGCCTGGACTTGACCATGTTGGCATAGCAACACAGGTTGTTGTGGAAAAGAAGCTAATGCGTGAAAGCGGTAAAACCAGACATGATATCGGTCGTGAGGAATTTATCTCTAAAGTTTGGGATTGGAAAATTGAGTATGGGGGCACCATTTTACAGCAGCTACGTCGTTTGGGTGCTTCTTTAGATTGGTCCCGTGAGTGCTTTACAATGGATGAGAAAAGTTCAAAGGCCGTTGCAGAAGCTTTTGTTAGGCTACATAATCAAGGACTCATCTACAGGGATAATCGCATAGTGAACTGGGATTGTGTGTTGCGGACCGCAATATCTGATATTGAGGTGGATCCTCCAATTGAAATAAAAGAAAGGACACTACTAGAAGTTCCTGGATATGAGAACCCTGTTGAATTTGGTGTTTTGACTTTATTTGCATATCCTGTGGAAGAAGATTTAGGTGAGATAGTTGTAGCCACTACCCGAATAGAGACGATGCTTGGTGATACTGCTATTGCAGTGCATCCTGATGACGAAAGATATAAGCATCTTCATGGAAAACATGCAATCCATCCATTTAATGGAAGAAGGATTCCTATAATAAGTGATGAAATTCTTGTTGATCCAGAATTTGGGACTGGTGCTGTCAAGATTACCCCGGCCCATGATCCTAATGACTTTATGGTTGGGAAGCGCCATAATCTTGAGTTTATCAATATCTTTACTGATGATGGAAAAATAAACCAGTATGGGGGAGCATTTGAAGGGATGCCACGCTTCAGTGCCCGAGAGGCTGTGACTGATGCATTAAAGAAGAAGGGCCTCTTCAAAGAAACTAAGACCAATGAGATGTGTCTTAGAATTTGCTCTAGAAGTAAAGATGTTGTGGAGCCTATGATAAAGCCCCAGTGGTACATTAAATGCAGCGATATGGGAAATGAAGCTCTCAATGCTGTTGCTGATGATGAAAATAGGAAGCTGGAAATTATCCCAAGACAGTATACTGCTGAGTGGAAGAGATGGCTTCATAACATTAGTGATTGGTGTGTCTCAAGGCAACTTTGGTGGGGTCACCGTGTTCCGGCATGGTATGTTGTTTTTGAGGGTGATGGCAACGAAGAATTTGGAAAAGTTTTTGAGCGATGGGTGGTTGCTAGAAGTGAAAAAGAGGCTCAAGCATTGGCTGATAAAAAATATGAGGGAAAGAAGTTTCGATTAGAACAGGACACAGATGTGCTTGACACGTGGTTTTCGTCTGGTCTTTTCCCATTGTTTGCATTGGGCTGGCCGGATGATACAGATGATTTCAAAACTTTTTATCCAAATTCAGTTGTTGAAACTGGGCACGACATTCTCTTTTTCTGGGTTGCTCGTATGGTGATGCTTGGAATTACATTGGGTGGTAATGTTCCCTTTACAAAGGTATACTTACACCCAATGGTTCGAGATGCACACGGGCGTAAAATGTCAAAGGGCTTGGGGAATGTCATTGACCCTGTTGACATAATAAATGGTATCACCCTAGAACGTCTACATGATAGACTTTTAGAGGGAAATCTGGACCCCAAGGAATTAGATAAGGCCAGAGAGGGACAATTAAAGGACTTCCCTGATGGTATTCCTGAGTGTGGTGCGGATGCTCTGCGGTTTTCTCTTATTTCGTACACTGCTCAGATAAATCTGGATATCCAAAGGGTTGTGGGTTACCGTCAGTGGTGTAACAAACTTTGGAATGCCGTGCGATTTGCTTTGGGTATACTTGGGGATGATTATGTTCCGCCCTCAAATGTAAATCCAGATGTGTTGCCATTCAGTTGCCGATGGATTCTCTCAGTGCTAAATGAAGCCATATCCAAAACTGCTATGTCATTGGAATCATACGAGTTCTCAGATGCTGCAACTGCTGTTTATGCTTGGTGGCAGTACCAGCTGTGTGATGTCTTCATTGAGACTGTCAAACCTTACTTTTCTGGTAATGATCCAAAGTTTGCAACAGAGAGGGGTTTTGCACGGGACACTCTATGGGTATGTCTTGACAATGGCCTGAGGTTACTTCATCCTTTCATGCCATATGTGACAGAAGAACTGTGGCAACGTCTGCCGTCGCCAGGGCATTACAAAAGGGCATCATCAATTATGATGAGCGAGTACCCATTGATCATAGAGCTTCATGCATCTGGTTCTCCAGCAACAGATCTTGAAAAGATCCGGAAAAGGATTGAATACATTACATGGGAACATGAGAGGCTATCGAAGAAATTGAATATGCTTGCTGCTAATGAAGATAAGGTCCCCGAGAAGGTTACAAGAGATACTGCTGACAAGCTGGAATCCCTTGAGAAGGAAAAGTTGTCTCTTGAAGAGTCGATTCTACTTATGGAAACACAGGAGATGAACTTTTAA

Protein Analysis

1127

Amino Acids

129.25

Weight (kDa)

6.05

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1 PF00133 268 - 883 3.4e-140 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1_2 PF13603 511 - 570 4.3e-07 Leucyl-tRNA synthetase, editing domain
Anticodon_1 PF08264 933 - 1067 2.6e-29 Anticodon-binding domain of tRNA ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 975
AasI GACNNNNNNGTC 1 cut(s) 539
AatII GACGTC 1 cut(s) 705
AccB1I GGYRCC 3 cut(s) 198, 899, 1130
AccB7I CCANNNNNTGG 3 cut(s) 137, 1559, 1610
AccI GTMKAC 5 cut(s) 485, 1979, 2403, 2509, 2734
AccII CGCG 1 cut(s) 708
AccIII TCCGGA 1 cut(s) 3186
AclWI GGATC 9 cut(s) 122, 167, 382, 1322, 1335, 1595, 1640, 2951, 3178
AcoI YGGCCR 2 cut(s) 986, 2264
AcsI RAATTY 9 cut(s) 117, 341, 1088, 1391, 1590, 1607, 1839, 2099, 2302
AcuI CTGAAG 3 cut(s) 267, 629, 1741
AcvI CACGTG 1 cut(s) 2223
AcyI GRCGYC 1 cut(s) 702
AfaI GTAC 7 cut(s) 368, 398, 806, 1892, 2642, 2903, 3128
AflIII ACRYGT 1 cut(s) 2220
AjnI CCWGG 3 cut(s) 991, 1369, 3085
AleI CACNNNNGTG 1 cut(s) 2210
Alw21I GWGCWC 1 cut(s) 509
Alw26I GTCTC 5 cut(s) 759, 1463, 2032, 2921, 3336
AlwI GGATC 9 cut(s) 122, 167, 382, 1322, 1335, 1595, 1640, 2951, 3178
AlwNI CAGNNNCTG 1 cut(s) 2873
Ama87I CYCGRG 3 cut(s) 290, 1764, 3272
Aor13HI TCCGGA 1 cut(s) 3186
ApeKI GCWGC 5 cut(s) 408, 1144, 1902, 2873, 3251
ApoI RAATTY 9 cut(s) 117, 341, 1088, 1391, 1590, 1607, 1839, 2099, 2302
AspLEI GCGC 1 cut(s) 1674
AspS9I GGNCC 7 cut(s) 166, 1176, 1302, 1639, 1798, 2539, 3268
AsuC2I CCSGG 2 cut(s) 164, 1637
AsuHPI GGTGA 7 cut(s) 20, 1451, 1493, 2042, 2096, 2368, 2488
AvaI CYCGRG 3 cut(s) 290, 1764, 3272
AvaII GGWCC 4 cut(s) 1176, 1302, 2539, 3268
AxyI CCTNAGG 1 cut(s) 3023
BaeGI GKGCMC 4 cut(s) 904, 1133, 1765, 2325
BamHI GGATCC 1 cut(s) 1327
BanI GGYRCC 3 cut(s) 198, 899, 1130
BanII GRGCYC 1 cut(s) 291
BarI GAAGNNNNNNTAC 2 cut(s) 788, 820
BbrPI CACGTG 1 cut(s) 2223
BbsI GAAGAC 1 cut(s) 2911
Bbv12I GWGCWC 1 cut(s) 509
BbvI GCAGC 5 cut(s) 420, 1156, 1914, 2860, 3238
BccI CCATC 9 cut(s) 107, 230, 1557, 1703, 1992, 2081, 2115, 2585, 2793
BceAI ACGGC 3 cut(s) 1202, 2699, 3064
BcgI CGANNNNNNTGC 2 cut(s) 1133, 1167
BciT130I CCWGG 3 cut(s) 993, 1371, 3087
BclI TGATCA 1 cut(s) 3135
BcnI CCSGG 2 cut(s) 164, 1637
BcoDI GTCTC 5 cut(s) 759, 1463, 2032, 2921, 3336
BfaI CTAG 5 cut(s) 350, 1361, 1848, 2133, 2501
BfmI CTRYAG 2 cut(s) 775, 1261
BfoI RGCGCY 1 cut(s) 1675
BglI GCCNNNNNGGC 2 cut(s) 295, 1769
BglII AGATCT 1 cut(s) 3172
BisI GCNGC 7 cut(s) 409, 881, 989, 1145, 1903, 2874, 3252
BlsI GCNGC 7 cut(s) 410, 882, 990, 1146, 1904, 2875, 3253
Bme1390I CCNGG 5 cut(s) 164, 993, 1371, 1637, 3087
Bme18I GGWCC 4 cut(s) 1176, 1302, 2539, 3268
BmeT110I CYCGRG 3 cut(s) 290, 1764, 3272
BmgT120I GGNCC 7 cut(s) 166, 1176, 1302, 1639, 1798, 2539, 3268
BmiI GGNNCC 9 cut(s) 200, 375, 901, 1132, 1178, 1329, 1869, 2541, 3270
BmrFI CCNGG 5 cut(s) 164, 993, 1371, 1637, 3087
BmrI ACTGGG 4 cut(s) 725, 1294, 1879, 2328
BmuI ACTGGG 4 cut(s) 725, 1294, 1879, 2328
BoxI GACNNNNGTC 1 cut(s) 731
BpiI GAAGAC 1 cut(s) 2911
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BpmI CTGGAG 2 cut(s) 485, 3147
BpuEI CTTGAG 6 cut(s) 230, 460, 1703, 2014, 2136, 3335
BpuMI CCSGG 2 cut(s) 164, 1637
BsaAI YACGTR 2 cut(s) 370, 2223
BsaBI GATNNNNATC 1 cut(s) 386
BsaHI GRCGYC 1 cut(s) 702
BsaJI CCNNGG 4 cut(s) 162, 1635, 2544, 3086
BsaWI WCCGGW 1 cut(s) 3186
Bse1I ACTGG 9 cut(s) 148, 250, 731, 901, 1289, 1621, 1723, 1885, 2323
Bse21I CCTNAGG 1 cut(s) 3023
Bse8I GATNNNNATC 1 cut(s) 386
BseAI TCCGGA 1 cut(s) 3186
BseBI CCWGG 3 cut(s) 993, 1371, 3087
BseDI CCNNGG 4 cut(s) 162, 1635, 2544, 3086
BseJI GATNNNNATC 1 cut(s) 386
BseMII CTCAG 7 cut(s) 483, 1977, 2592, 2663, 2823, 2880, 3014
BseNI ACTGG 9 cut(s) 148, 250, 731, 901, 1289, 1621, 1723, 1885, 2323
BseRI GAGGAG 1 cut(s) 747
BseSI GKGCMC 4 cut(s) 904, 1133, 1765, 2325
BseXI GCAGC 5 cut(s) 420, 1156, 1914, 2860, 3238
Bsh1236I CGCG 1 cut(s) 708
Bsh1285I CGRYCG 1 cut(s) 1081
BshNI GGYRCC 3 cut(s) 198, 899, 1130
BsiEI CGRYCG 1 cut(s) 1081
BsiHKAI GWGCWC 1 cut(s) 509
BsiHKCI CYCGRG 3 cut(s) 290, 1764, 3272
BsiSI CCGG 5 cut(s) 164, 1637, 2060, 2267, 3187
BslFI GGGAC 7 cut(s) 154, 425, 1162, 1627, 2583, 3005, 3254
BsmAI GTCTC 5 cut(s) 759, 1463, 2032, 2921, 3336
BsmBI CGTCTC 1 cut(s) 1463
BsmFI GGGAC 7 cut(s) 154, 425, 1162, 1627, 2583, 3005, 3254
BsmI GAATGC 1 cut(s) 2716
BsoBI CYCGRG 3 cut(s) 290, 1764, 3272
Bsp1286I GDGCHC 6 cut(s) 291, 509, 904, 1133, 1765, 2325
Bsp13I TCCGGA 1 cut(s) 3186
BspCNI CTCAG 7 cut(s) 484, 1978, 2593, 2662, 2822, 2879, 3015
BspEI TCCGGA 1 cut(s) 3186
BspFNI CGCG 1 cut(s) 708
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 9 cut(s) 200, 375, 901, 1132, 1178, 1329, 1869, 2541, 3270
BspPI GGATC 9 cut(s) 122, 167, 382, 1322, 1335, 1595, 1640, 2951, 3178
BspT107I GGYRCC 3 cut(s) 198, 899, 1130
BsrI ACTGG 9 cut(s) 148, 250, 731, 901, 1289, 1621, 1723, 1885, 2323
BssECI CCNNGG 4 cut(s) 162, 1635, 2544, 3086
BssNAI GTATAC 4 cut(s) 486, 1980, 2404, 2735
BssNI GRCGYC 1 cut(s) 702
BssT1I CCWWGG 1 cut(s) 2544
Bst1107I GTATAC 4 cut(s) 486, 1980, 2404, 2735
Bst2UI CCWGG 3 cut(s) 993, 1371, 3087
Bst4CI ACNGT 8 cut(s) 483, 541, 779, 1977, 2054, 2687, 2932, 3066
Bst6I CTCTTC 5 cut(s) 310, 494, 1808, 1988, 3333
BstACI GRCGYC 1 cut(s) 702
BstAPI GCANNNNNTGC 1 cut(s) 3076
BstBAI YACGTR 2 cut(s) 370, 2223
BstC8I GCNNGC 3 cut(s) 300, 2264, 3249
BstEII GGTNACC 2 cut(s) 2048, 2681
BstENI CCTNNNNNAGG 1 cut(s) 3317
BstFNI CGCG 1 cut(s) 708
BstH2I RGCGCY 1 cut(s) 1675
BstHHI GCGC 1 cut(s) 1674
BstMAI GTCTC 5 cut(s) 759, 1463, 2032, 2921, 3336
BstMCI CGRYCG 1 cut(s) 1081
BstNI CCWGG 3 cut(s) 993, 1371, 3087
BstNSI RCATGY 1 cut(s) 1544
BstPAI GACNNNNGTC 1 cut(s) 731
BstPI GGTNACC 2 cut(s) 2048, 2681
BstSCI CCNGG 5 cut(s) 162, 991, 1369, 1635, 3085
BstSFI CTRYAG 2 cut(s) 775, 1261
BstSLI GKGCMC 4 cut(s) 904, 1133, 1765, 2325
BstUI CGCG 1 cut(s) 708
BstV1I GCAGC 5 cut(s) 420, 1156, 1914, 2860, 3238
BstV2I GAAGAC 1 cut(s) 2911
BstX2I RGATCY 4 cut(s) 387, 1327, 3172, 3183
BstYI RGATCY 4 cut(s) 387, 1327, 3172, 3183
BstZ17I GTATAC 4 cut(s) 486, 1980, 2404, 2735
Bsu36I CCTNAGG 1 cut(s) 3023
BtgZI GCGATG 1 cut(s) 2134
BtsI GCAGTG 2 cut(s) 1503, 2643
BtsIMutI CAGTG 6 cut(s) 1503, 1765, 1892, 2643, 2696, 2817
Cac8I GCNNGC 3 cut(s) 300, 2264, 3249
CaiI CAGNNNCTG 1 cut(s) 2873
CciI TCATGA 1 cut(s) 58
CfoI GCGC 1 cut(s) 1674
Cfr13I GGNCC 7 cut(s) 166, 1176, 1302, 1639, 1798, 2539, 3268
CpoI CGGWCCG 1 cut(s) 1302
Csp6I GTAC 7 cut(s) 367, 397, 805, 1891, 2641, 2902, 3127
CspCI CAANNNNNGTGG 2 cut(s) 2024, 2059
CspI CGGWCCG 1 cut(s) 1302
CviQI GTAC 7 cut(s) 367, 397, 805, 1891, 2641, 2902, 3127
DrdI GACNNNNNNGTC 1 cut(s) 539
DseDI GACNNNNNNGTC 1 cut(s) 539
EaeI YGGCCR 2 cut(s) 986, 2264
Eam1104I CTCTTC 5 cut(s) 310, 494, 1808, 1988, 3333
EarI CTCTTC 5 cut(s) 310, 494, 1808, 1988, 3333
EciI GGCGGA 2 cut(s) 973, 2745
Eco130I CCWWGG 1 cut(s) 2544
Eco24I GRGCYC 1 cut(s) 291
Eco32I GATATC 2 cut(s) 1075, 2665
Eco47I GGWCC 4 cut(s) 1176, 1302, 2539, 3268
Eco57I CTGAAG 3 cut(s) 267, 629, 1741
Eco72I CACGTG 1 cut(s) 2223
Eco81I CCTNAGG 1 cut(s) 3023
Eco88I CYCGRG 3 cut(s) 290, 1764, 3272
Eco91I GGTNACC 2 cut(s) 2048, 2681
EcoNI CCTNNNNNAGG 1 cut(s) 3317
EcoO109I RGGNCCY 2 cut(s) 1798, 3268
EcoO65I GGTNACC 2 cut(s) 2048, 2681
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 3 cut(s) 991, 1369, 3085
EcoRV GATATC 2 cut(s) 1075, 2665
EcoT14I CCWWGG 1 cut(s) 2544
EcoT22I ATGCAT 2 cut(s) 1786, 3154
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 2544
Esp3I CGTCTC 1 cut(s) 1463
FalI AAGNNNNNCTT 4 cut(s) 1787, 1819, 2390, 2422
FaqI GGGAC 7 cut(s) 154, 425, 1162, 1627, 2583, 3005, 3254
FauNDI CATATG 1 cut(s) 3049
FbaI TGATCA 1 cut(s) 3135
FblI GTMKAC 5 cut(s) 485, 1979, 2403, 2509, 2734
Fnu4HI GCNGC 7 cut(s) 409, 881, 989, 1145, 1903, 2874, 3252
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 7 cut(s) 409, 881, 989, 1145, 1903, 2874, 3252
FspBI CTAG 5 cut(s) 350, 1361, 1848, 2133, 2501
GlaI GCGC 1 cut(s) 1673
GluI GCNGC 7 cut(s) 409, 881, 989, 1145, 1903, 2874, 3252
GsuI CTGGAG 2 cut(s) 485, 3147
HaeII RGCGCY 1 cut(s) 1675
HapII CCGG 5 cut(s) 164, 1637, 2060, 2267, 3187
HhaI GCGC 1 cut(s) 1674
Hin1I GRCGYC 1 cut(s) 702
Hin6I GCGC 1 cut(s) 1672
HinP1I GCGC 1 cut(s) 1672
HincII GTYRAC 1 cut(s) 2479
HindII GTYRAC 1 cut(s) 2479
HindIII AAGCTT 3 cut(s) 633, 641, 1227
HinfI GANTC 8 cut(s) 97, 1254, 1570, 2803, 2852, 3308, 3341, 3346
HpaII CCGG 5 cut(s) 164, 1637, 2060, 2267, 3187
HphI GGTGA 7 cut(s) 20, 1451, 1493, 2042, 2096, 2368, 2488
Hpy166II GTNNAC 8 cut(s) 486, 1282, 1980, 2404, 2479, 2510, 2643, 2735
Hpy188I TCNGA 5 cut(s) 286, 726, 1315, 2652, 2869
Hpy8I GTNNAC 8 cut(s) 486, 1282, 1980, 2404, 2479, 2510, 2643, 2735
Hpy99I CGWCG 2 cut(s) 1155, 3085
HpyCH4III ACNGT 8 cut(s) 483, 541, 779, 1977, 2054, 2687, 2932, 3066
HpyCH4IV ACGT 6 cut(s) 369, 702, 1150, 2222, 2506, 3073
HpySE526I ACGT 6 cut(s) 369, 702, 1150, 2222, 2506, 3073
Hsp92I GRCGYC 1 cut(s) 702
HspAI GCGC 1 cut(s) 1672
Kpn2I TCCGGA 1 cut(s) 3186
Ksp22I TGATCA 1 cut(s) 3135
LmnI GCTCC 4 cut(s) 260, 373, 1733, 1867
Lsp1109I GCAGC 5 cut(s) 420, 1156, 1914, 2860, 3238
MaeI CTAG 5 cut(s) 350, 1361, 1848, 2133, 2501
MaeII ACGT 6 cut(s) 369, 702, 1150, 2222, 2506, 3073
MaeIII GTNAC 9 cut(s) 851, 892, 1774, 2048, 2681, 2696, 3027, 3052, 3280
MfeI CAATTG 1 cut(s) 1335
MflI RGATCY 4 cut(s) 387, 1327, 3172, 3183
MhlI GDGCHC 6 cut(s) 291, 509, 904, 1133, 1765, 2325
MlyI GAGTC 2 cut(s) 1248, 3350
MmeI TCCRAC 1 cut(s) 749
Mph1103I ATGCAT 2 cut(s) 1786, 3154
MroI TCCGGA 1 cut(s) 3186
MseI TTAA 7 cut(s) 84, 402, 1557, 1787, 1896, 2576, 3379
MslI CAYNNNNRTG 6 cut(s) 33, 57, 542, 1506, 1530, 2210
MspA1I CMGCKG 1 cut(s) 2908
MspI CCGG 5 cut(s) 164, 1637, 2060, 2267, 3187
MspR9I CCNGG 5 cut(s) 164, 993, 1371, 1637, 3087
MunI CAATTG 1 cut(s) 1335
Mva1269I GAATGC 1 cut(s) 2716
MvaI CCWGG 3 cut(s) 993, 1371, 3087
MvnI CGCG 1 cut(s) 708
NciI CCSGG 2 cut(s) 164, 1637
NdeI CATATG 1 cut(s) 3049
NlaIV GGNNCC 9 cut(s) 200, 375, 901, 1132, 1178, 1329, 1869, 2541, 3270
NmuCI GTSAC 5 cut(s) 851, 892, 1774, 2048, 3052
NsiI ATGCAT 2 cut(s) 1786, 3154
NspI RCATGY 1 cut(s) 1544
OliI CACNNNNGTG 1 cut(s) 2210
PagI TCATGA 1 cut(s) 58
PcsI WCGNNNNNNNCGW 1 cut(s) 2228
PctI GAATGC 1 cut(s) 2716
PfeI GAWTC 6 cut(s) 97, 1570, 2803, 2852, 3308, 3346
PflMI CCANNNNNTGG 3 cut(s) 137, 1559, 1610
PfoI TCCNGGA 1 cut(s) 1369
PkrI GCNGC 7 cut(s) 410, 882, 990, 1146, 1904, 2875, 3253
PleI GAGTC 2 cut(s) 1248, 3349
PmaCI CACGTG 1 cut(s) 2223
PmlI CACGTG 1 cut(s) 2223
PpsI GAGTC 2 cut(s) 1248, 3349
Ppu21I YACGTR 2 cut(s) 370, 2223
PpuMI RGGWCCY 1 cut(s) 3268
PshAI GACNNNNGTC 1 cut(s) 731
PsiI TTATAA 1 cut(s) 975
Psp5II RGGWCCY 1 cut(s) 3268
Psp6I CCWGG 3 cut(s) 991, 1369, 3085
PspCI CACGTG 1 cut(s) 2223
PspEI GGTNACC 2 cut(s) 2048, 2681
PspGI CCWGG 3 cut(s) 991, 1369, 3085
PspN4I GGNNCC 9 cut(s) 200, 375, 901, 1132, 1178, 1329, 1869, 2541, 3270
PspPI GGNCC 7 cut(s) 166, 1176, 1302, 1639, 1798, 2539, 3268
PspPPI RGGWCCY 1 cut(s) 3268
PstNI CAGNNNCTG 1 cut(s) 2873
PsuI RGATCY 4 cut(s) 387, 1327, 3172, 3183
PvuII CAGCTG 1 cut(s) 2908
RsaI GTAC 7 cut(s) 368, 398, 806, 1892, 2642, 2903, 3128
RsaNI GTAC 7 cut(s) 367, 397, 805, 1891, 2641, 2902, 3127
RseI CAYNNNNRTG 6 cut(s) 33, 57, 542, 1506, 1530, 2210
Rsr2I CGGWCCG 1 cut(s) 1302
RsrII CGGWCCG 1 cut(s) 1302
SaqAI TTAA 7 cut(s) 84, 402, 1557, 1787, 1896, 2576, 3379
SatI GCNGC 7 cut(s) 409, 881, 989, 1145, 1903, 2874, 3252
Sau96I GGNCC 7 cut(s) 166, 1176, 1302, 1639, 1798, 2539, 3268
SchI GAGTC 2 cut(s) 1248, 3350
ScrFI CCNGG 5 cut(s) 164, 993, 1371, 1637, 3087
SduI GDGCHC 6 cut(s) 291, 509, 904, 1133, 1765, 2325
SfcI CTRYAG 2 cut(s) 775, 1261
SinI GGWCC 4 cut(s) 1176, 1302, 2539, 3268
SmiMI CAYNNNNRTG 6 cut(s) 33, 57, 542, 1506, 1530, 2210
SmlI CTYRAG 6 cut(s) 209, 475, 1682, 2029, 2151, 3314
SmoI CTYRAG 6 cut(s) 209, 475, 1682, 2029, 2151, 3314
SspMI CTAG 5 cut(s) 350, 1361, 1848, 2133, 2501
StyD4I CCNGG 5 cut(s) 162, 991, 1369, 1635, 3085
StyI CCWWGG 1 cut(s) 2544
TaaI ACNGT 8 cut(s) 483, 541, 779, 1977, 2054, 2687, 2932, 3066
TaiI ACGT 6 cut(s) 372, 705, 1153, 2225, 2509, 3076
TaqI TCGA 6 cut(s) 39, 560, 2191, 2422, 3230, 3344
TaqII GACCGA 1 cut(s) 1067
TauI GCSGC 2 cut(s) 883, 991
TfiI GAWTC 6 cut(s) 97, 1570, 2803, 2852, 3308, 3346
Tru1I TTAA 7 cut(s) 84, 402, 1557, 1787, 1896, 2576, 3379
Tru9I TTAA 7 cut(s) 84, 402, 1557, 1787, 1896, 2576, 3379
TscAI CASTG 6 cut(s) 1503, 1765, 1892, 2650, 2696, 2817
TseFI GTSAC 5 cut(s) 851, 892, 1774, 2048, 3052
TseI GCWGC 5 cut(s) 408, 1144, 1902, 2873, 3251
Tsp45I GTSAC 5 cut(s) 851, 892, 1774, 2048, 3052
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 6 cut(s) 1503, 1765, 1892, 2650, 2696, 2817
Van91I CCANNNNNTGG 3 cut(s) 137, 1559, 1610
VpaK11BI GGWCC 4 cut(s) 1176, 1302, 2539, 3268
XagI CCTNNNNNAGG 1 cut(s) 3317
XapI RAATTY 9 cut(s) 117, 341, 1088, 1391, 1590, 1607, 1839, 2099, 2302
XbaI TCTAGA 1 cut(s) 1847
XceI RCATGY 1 cut(s) 1544
XcmI CCANNNNNNNNNTGG 1 cut(s) 1556
XmiI GTMKAC 5 cut(s) 485, 1979, 2403, 2509, 2734
XspI CTAG 5 cut(s) 350, 1361, 1848, 2133, 2501
ZraI GACGTC 1 cut(s) 703
Zsp2I ATGCAT 2 cut(s) 1786, 3154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.