Rorug07G0270800

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
25565374 .. 25567078
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0270800.1

Sequence Viewer

Length: 993 bp
ATGACGACGGCCCAAAGCCTCAAAAGGTTCGGTCTTTCCGGAGAAGTTTTGCCGTTTTTAGACCACTCCGACGGCAATTCACTTCGACTCAGAAGTGTTGTGTATGCTTCTTCTGCTAGTATTTCTACTGAAACCGAGGCTCTTCTCCGATGGAAAGCCAGCTTACAAACACAAACCCAGAATAATCTTTCCTCATGGAAAGCCAATGCATCTAGTCCATGCAATGCTTGGACTGGTATTTTATGCAGCACTGCTGGAAGTGTCAACAAGATAAACCTCACCAATTCCGGTATACTAGATCAGTTTCCTATCAAAAAAATTTATCTTGATCTATCCTATAATCAGTTATCTGGGAACATCCCACCAGAAATTGGTCTTTTAACAAATCTTGAGGTTCTGCACCTTATGGAAAACCATTTAAATGGCTCAATTCCTCAAGAAATAGGTCAGCTTAAGTTCATGTACGAGCTTGCGCTGTACACCAACAATCTCGAAGGTTCAATTCCTATTTCTCTCGGCTATTTGAGCAACATGAGATTTTTGTATCTCTATGAAAACCAACTTTCTGGTCCCATTCCTCCAGAAATAGGAAACCTTCATAATTTGGTTGAGCTCTTTATCGATGCCAACTACTTGACAGGTCCAATCCCTCCAAATTTTGGAAACTTCATAGAGCTCACTGTGATGTCATTGTGTAACAATAATCTTTTTGGTTCTATCCCTTCAGAACTAGGAAATCTGAAGTCTCTGATCCAACTCTATATTCATCAGAACAATTTTTCTGGCTCAATCCCGACATCTTTAGGTGACCTGACAAACCTTACTCATCTCTATCTATTTCAAAATAAACTTTCTGGAGCCATTCCAAAAGAGCTAGGGAGGTTGAAATCTCTCGTAGATCTACAGTTGACCATGAATCAATTGAATAGTTCCATTCCTACTTCATTTGGGAATTTGAGAAACATAGAAATCTTATACCTCCGTGACAGATAA

Protein Analysis

330

Amino Acids

36.54

Weight (kDa)

5.87

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 42 - 83 1.6e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 109 - 206 9.9e-08 Leucine-rich repeat region
LRR_14 PF23598 220 - 326 7.4e-10 Leucine-rich repeat region
LRR_8 PF13855 225 - 284 2.3e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 371, 659
AccI GTMKAC 1 cut(s) 292
AccIII TCCGGA 1 cut(s) 38
AclWI GGATC 1 cut(s) 745
AcsI RAATTY 3 cut(s) 318, 655, 952
AcuI CTGAAG 2 cut(s) 708, 761
AfaI GTAC 2 cut(s) 464, 479
AfiI CCNNNNNNNGG 3 cut(s) 371, 587, 659
AflII CTTAAG 1 cut(s) 452
AgsI TTSAA 4 cut(s) 501, 842, 886, 925
AjuI GAANNNNNNNTTGG 2 cut(s) 747, 779
AluBI AGCT 6 cut(s) 162, 451, 469, 613, 676, 874
AluI AGCT 6 cut(s) 162, 451, 469, 613, 676, 874
Alw21I GWGCWC 2 cut(s) 615, 678
Alw26I GTCTC 1 cut(s) 750
AlwI GGATC 1 cut(s) 745
Aor13HI TCCGGA 1 cut(s) 38
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 246
ApoI RAATTY 3 cut(s) 318, 655, 952
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 3 cut(s) 10, 569, 641
AsuHPI GGTGA 2 cut(s) 271, 818
AvaII GGWCC 2 cut(s) 569, 641
BanII GRGCYC 2 cut(s) 615, 678
Bbv12I GWGCWC 2 cut(s) 615, 678
BbvI GCAGC 1 cut(s) 258
BccI CCATC 1 cut(s) 144
BceAI ACGGC 3 cut(s) 24, 37, 88
BcoDI GTCTC 1 cut(s) 750
BfaI CTAG 5 cut(s) 117, 213, 296, 731, 875
BfmI CTRYAG 1 cut(s) 902
BfrI CTTAAG 1 cut(s) 452
BglII AGATCT 1 cut(s) 898
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
Bme18I GGWCC 2 cut(s) 569, 641
BmgT120I GGNCC 3 cut(s) 10, 569, 641
BmiI GGNNCC 2 cut(s) 571, 859
BmsI GCATC 2 cut(s) 218, 613
BpmI CTGGAG 2 cut(s) 564, 876
BpuEI CTTGAG 2 cut(s) 410, 420
Bsa29I ATCGAT 1 cut(s) 621
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 2 cut(s) 38, 287
Bsc4I CCNNNNNNNGG 3 cut(s) 371, 587, 659
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 229
BseAI TCCGGA 1 cut(s) 38
BseCI ATCGAT 1 cut(s) 621
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 3 cut(s) 371, 587, 659
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 383
BshFI GGCC 1 cut(s) 11
BshVI ATCGAT 1 cut(s) 621
BsiHKAI GWGCWC 2 cut(s) 615, 678
BsiSI CCGG 2 cut(s) 39, 288
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 3 cut(s) 371, 587, 659
BsmAI GTCTC 1 cut(s) 750
BsmFI GGGAC 1 cut(s) 555
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 615, 678
Bsp13I TCCGGA 1 cut(s) 38
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 4 cut(s) 298, 328, 750, 898
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 102
BspDI ATCGAT 1 cut(s) 621
BspEI TCCGGA 1 cut(s) 38
BspLI GGNNCC 2 cut(s) 571, 859
BspPI GGATC 1 cut(s) 745
BspQI GCTCTTC 1 cut(s) 147
BspTI CTTAAG 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 229
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 4 cut(s) 298, 328, 750, 898
BssNAI GTATAC 1 cut(s) 293
Bst1107I GTATAC 1 cut(s) 293
Bst4CI ACNGT 2 cut(s) 682, 906
Bst6I CTCTTC 1 cut(s) 147
BstAFI CTTAAG 1 cut(s) 452
BstAUI TGTACA 1 cut(s) 477
BstC8I GCNNGC 2 cut(s) 160, 471
BstDEI CTNAG 1 cut(s) 89
BstEII GGTNACC 1 cut(s) 806
BstF5I GGATG 1 cut(s) 357
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 4 cut(s) 301, 331, 753, 901
BstMAI GTCTC 1 cut(s) 750
BstMBI GATC 4 cut(s) 298, 328, 750, 898
BstMWI GCNNNNNNNGC 2 cut(s) 113, 525
BstPI GGTNACC 1 cut(s) 806
BstSFI CTRYAG 1 cut(s) 902
BstV1I GCAGC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 898
BstXI CCANNNNNNTGG 2 cut(s) 422, 566
BstYI RGATCY 1 cut(s) 898
BstZ17I GTATAC 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 621
BsuRI GGCC 1 cut(s) 11
BsuTUI ATCGAT 1 cut(s) 621
BtsCI GGATG 1 cut(s) 357
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 2 cut(s) 249, 678
Cac8I GCNNGC 2 cut(s) 160, 471
CfoI GCGC 1 cut(s) 475
Cfr13I GGNCC 3 cut(s) 10, 569, 641
ClaI ATCGAT 1 cut(s) 621
Csp6I GTAC 2 cut(s) 463, 478
CviAII CATG 5 cut(s) 195, 219, 460, 532, 913
CviQI GTAC 2 cut(s) 463, 478
DdeI CTNAG 1 cut(s) 89
DpnI GATC 4 cut(s) 300, 330, 752, 900
DpnII GATC 4 cut(s) 298, 328, 750, 898
DraI TTTAAA 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Ecl136II GAGCTC 2 cut(s) 613, 676
Eco24I GRGCYC 2 cut(s) 615, 678
Eco47I GGWCC 2 cut(s) 569, 641
Eco53kI GAGCTC 2 cut(s) 613, 676
Eco57I CTGAAG 2 cut(s) 708, 761
Eco91I GGTNACC 1 cut(s) 806
EcoICRI GAGCTC 2 cut(s) 613, 676
EcoO65I GGTNACC 1 cut(s) 806
EcoT22I ATGCAT 1 cut(s) 211
EcoT38I GRGCYC 2 cut(s) 615, 678
FaeI CATG 5 cut(s) 198, 222, 463, 535, 916
FaqI GGGAC 1 cut(s) 555
FatI CATG 5 cut(s) 194, 218, 459, 531, 912
FblI GTMKAC 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 247
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 2 cut(s) 615, 678
Fsp4HI GCNGC 1 cut(s) 247
FspBI CTAG 5 cut(s) 117, 213, 296, 731, 875
GlaI GCGC 1 cut(s) 474
GluI GCNGC 1 cut(s) 247
GsuI CTGGAG 2 cut(s) 564, 876
HaeIII GGCC 1 cut(s) 11
HapII CCGG 2 cut(s) 39, 288
HhaI GCGC 1 cut(s) 475
Hin1II CATG 5 cut(s) 198, 222, 463, 535, 916
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HincII GTYRAC 2 cut(s) 265, 909
HindII GTYRAC 2 cut(s) 265, 909
HinfI GANTC 2 cut(s) 87, 916
HpaII CCGG 2 cut(s) 39, 288
HphI GGTGA 2 cut(s) 271, 818
Hpy166II GTNNAC 4 cut(s) 265, 293, 480, 909
Hpy188I TCNGA 7 cut(s) 70, 92, 149, 727, 741, 750, 771
Hpy188III TCNNGA 8 cut(s) 39, 326, 389, 437, 491, 581, 793, 855
Hpy8I GTNNAC 4 cut(s) 265, 293, 480, 909
Hpy99I CGWCG 2 cut(s) 10, 74
HpyAV CCTTC 3 cut(s) 488, 605, 732
HpyCH4III ACNGT 2 cut(s) 682, 906
HpyCH4V TGCA 4 cut(s) 209, 222, 246, 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 525
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 5 cut(s) 198, 222, 463, 535, 916
HspAI GCGC 1 cut(s) 473
Kpn2I TCCGGA 1 cut(s) 38
Kzo9I GATC 4 cut(s) 298, 328, 750, 898
LguI GCTCTTC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 857
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 2 cut(s) 218, 613
MaeI CTAG 5 cut(s) 117, 213, 296, 731, 875
MaeIII GTNAC 3 cut(s) 695, 806, 983
MalI GATC 4 cut(s) 300, 330, 752, 900
MboI GATC 4 cut(s) 298, 328, 750, 898
MboII GAAGA 2 cut(s) 102, 134
MfeI CAATTG 1 cut(s) 920
MflI RGATCY 1 cut(s) 898
MhlI GDGCHC 2 cut(s) 615, 678
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 2 cut(s) 93, 778
Mph1103I ATGCAT 1 cut(s) 211
MroI TCCGGA 1 cut(s) 38
MseI TTAA 3 cut(s) 380, 419, 453
MslI CAYNNNNRTG 2 cut(s) 420, 683
MspCI CTTAAG 1 cut(s) 452
MspI CCGG 2 cut(s) 39, 288
MunI CAATTG 1 cut(s) 920
MwoI GCNNNNNNNGC 2 cut(s) 113, 525
NdeII GATC 4 cut(s) 298, 328, 750, 898
NlaIII CATG 5 cut(s) 198, 222, 463, 535, 916
NlaIV GGNNCC 2 cut(s) 571, 859
NmeAIII GCCGAG 1 cut(s) 495
NmuCI GTSAC 2 cut(s) 806, 983
NsiI ATGCAT 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 916
PflMI CCANNNNNTGG 2 cut(s) 371, 659
PkrI GCNGC 1 cut(s) 248
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
Psp124BI GAGCTC 2 cut(s) 615, 678
PspEI GGTNACC 1 cut(s) 806
PspN4I GGNNCC 2 cut(s) 571, 859
PspPI GGNCC 3 cut(s) 10, 569, 641
PsuI RGATCY 1 cut(s) 898
RsaI GTAC 2 cut(s) 464, 479
RsaNI GTAC 2 cut(s) 463, 478
RseI CAYNNNNRTG 2 cut(s) 420, 683
SacI GAGCTC 2 cut(s) 615, 678
SapI GCTCTTC 1 cut(s) 147
SaqAI TTAA 3 cut(s) 380, 419, 453
SatI GCNGC 1 cut(s) 247
Sau3AI GATC 4 cut(s) 298, 328, 750, 898
Sau96I GGNCC 3 cut(s) 10, 569, 641
SchI GAGTC 1 cut(s) 81
SduI GDGCHC 2 cut(s) 615, 678
SfaNI GCATC 2 cut(s) 218, 613
SfcI CTRYAG 1 cut(s) 902
SinI GGWCC 2 cut(s) 569, 641
SmiI ATTTAAAT 1 cut(s) 420
SmiMI CAYNNNNRTG 2 cut(s) 420, 683
SmlI CTYRAG 3 cut(s) 389, 435, 452
SmoI CTYRAG 3 cut(s) 389, 435, 452
SspMI CTAG 5 cut(s) 117, 213, 296, 731, 875
SstI GAGCTC 2 cut(s) 615, 678
SwaI ATTTAAAT 1 cut(s) 420
TaaI ACNGT 2 cut(s) 682, 906
TaqI TCGA 3 cut(s) 85, 492, 621
TaqII GACCGA 1 cut(s) 20
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 1 cut(s) 916
Tru1I TTAA 3 cut(s) 380, 419, 453
Tru9I TTAA 3 cut(s) 380, 419, 453
TscAI CASTG 2 cut(s) 256, 685
TseFI GTSAC 2 cut(s) 806, 983
TseI GCWGC 1 cut(s) 246
Tsp45I GTSAC 2 cut(s) 806, 983
TspDTI ATGAA 7 cut(s) 448, 567, 587, 658, 755, 929, 933
TspGWI ACGGA 1 cut(s) 971
TspRI CASTG 2 cut(s) 256, 685
Van91I CCANNNNNTGG 2 cut(s) 371, 659
Vha464I CTTAAG 1 cut(s) 452
VpaK11BI GGWCC 2 cut(s) 569, 641
XapI RAATTY 3 cut(s) 318, 655, 952
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
XmiI GTMKAC 1 cut(s) 292
XspI CTAG 5 cut(s) 117, 213, 296, 731, 875
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.