RchiOBHm_Chr7g0218391

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
36433894 .. 36436775
2882 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19549

Sequence Viewer

Length: 963 bp
ATGTGGGTTTGGATTTCCGTAAGAGGATTAGGAAATCGAGTTACAGATGATGGACGACGACAGTTGGAAGAAGAAGCAGAAAAAGAACGAAAAGGTGGCAAGAGTGAAAGAACTGAAAAAGCAAAAGGCTTTAGAGAAAGCTTCAGGCCCAACAAGCTAATCCAAAGAAGACTGGGAAGAAGAAGAAGCTACAGAAGTCCGAGGCCGACGACGACAATGCAAGTGATTTCGTTGGCGGAGAATGTTGTTGTGGAAAAGAAGCTAATGCGTGAAAGCGGCAAAACCAGACATGATATCGGTCGTGAGGAATTTGTCTCTAAAGTTTGGGATTGGAAAAGTAAGTATGGGGGCACCATTTTACAGCAGCTACGTCGTTTGGGTGCTTCTTTAGATTGGTCCCGTGAGTGCTTTACAATGGATGAGAAAAGTTCAAAGGCTGTTGCAGAAGCTTTTGTTAGGCTACATAGTCAGGGACTCATCTACAGGGATAATCGCATAGTGAACTGGGATTGTGTGTTGCGGACTGCAATATCCGATATTGAGGTGGATCCTCCAATTGAAATAAAAGAAAGGACACTACTAGAAGTTCCTGGATATGAGAACCCTGTTGAATTTGGTGTTTTGACTTTATTTGCATATCCTGTGGAAGAAGATTTAGGTGAGATAGTTGTAGCCACTACCCGAATAGAGACGATGCTCGGTGATACTGCTATCGCAGTGCATCCTGATGACGAAAGATATAAGCATCTTCATGGAAAACATGCAATCCATCCATTTAATGGAAGAAGGATTCCTATAATAGGTGATGAAATTCTTGTTGATCCAGAGTTTGGGACTGCTGCTGTCAAGATTACCCCGGCCCATGATCCTAATGACTTTATGGTCGGGAAGCGCCATAATCTTGAGTTTATCAACATCTTTAATGATGATGGTAAAATAAACCAGTATGGGGGGAGCATTTGA

Protein Analysis

320

Amino Acids

36.74

Weight (kDa)

7.8

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1 PF00133 78 - 183 1.5e-33 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1_2 PF13603 251 - 309 1.3e-06 Leucyl-tRNA synthetase, editing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 881
AccB1I GGYRCC 1 cut(s) 350
AccB7I CCANNNNNTGG 2 cut(s) 779, 830
AciI CCGC 3 cut(s) 236, 276, 520
AclWI GGATC 4 cut(s) 542, 555, 815, 860
AcsI RAATTY 3 cut(s) 308, 611, 810
AcuI CTGAAG 1 cut(s) 127
AfiI CCNNNNNNNGG 4 cut(s) 779, 800, 830, 949
AgsI TTSAA 3 cut(s) 432, 560, 611
AjnI CCWGG 1 cut(s) 589
AluBI AGCT 6 cut(s) 141, 157, 189, 262, 367, 449
AluI AGCT 6 cut(s) 141, 157, 189, 262, 367, 449
Alw26I GTCTC 2 cut(s) 319, 683
AlwI GGATC 4 cut(s) 542, 555, 815, 860
AoxI GGCC 3 cut(s) 146, 203, 858
ApeKI GCWGC 2 cut(s) 364, 839
ApoI RAATTY 3 cut(s) 308, 611, 810
AspLEI GCGC 1 cut(s) 894
AspS9I GGNCC 3 cut(s) 147, 396, 859
AsuC2I CCSGG 1 cut(s) 857
AsuHPI GGTGA 3 cut(s) 671, 713, 815
AvaII GGWCC 1 cut(s) 396
BaeGI GKGCMC 1 cut(s) 353
BamHI GGATCC 1 cut(s) 547
BanI GGYRCC 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 175
BbvI GCAGC 2 cut(s) 376, 826
BccI CCATC 3 cut(s) 44, 777, 923
BcgI CGANNNNNNTGC 4 cut(s) 199, 233, 353, 387
BciT130I CCWGG 1 cut(s) 591
BcnI CCSGG 1 cut(s) 857
BcoDI GTCTC 2 cut(s) 319, 683
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 2 cut(s) 190, 481
BfoI RGCGCY 1 cut(s) 895
BisI GCNGC 3 cut(s) 277, 365, 840
BlsI GCNGC 3 cut(s) 278, 366, 841
Bme1390I CCNGG 2 cut(s) 591, 857
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 3 cut(s) 147, 396, 859
BmiI GGNNCC 3 cut(s) 352, 398, 549
BmrFI CCNGG 2 cut(s) 591, 857
BmrI ACTGGG 2 cut(s) 182, 514
BmsI GCATC 3 cut(s) 684, 730, 754
BmuI ACTGGG 2 cut(s) 182, 514
BpiI GAAGAC 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 923
BpuMI CCSGG 1 cut(s) 857
BsaJI CCNNGG 2 cut(s) 200, 855
Bsc4I CCNNNNNNNGG 4 cut(s) 779, 800, 830, 949
Bse1I ACTGG 3 cut(s) 177, 509, 943
BseBI CCWGG 1 cut(s) 591
BseDI CCNNGG 2 cut(s) 200, 855
BseGI GGATG 3 cut(s) 424, 721, 769
BseLI CCNNNNNNNGG 4 cut(s) 779, 800, 830, 949
BseNI ACTGG 3 cut(s) 177, 509, 943
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 2 cut(s) 376, 826
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 3 cut(s) 148, 205, 860
BshNI GGYRCC 1 cut(s) 350
BsiEI CGRYCG 1 cut(s) 301
BsiSI CCGG 1 cut(s) 857
BslFI GGGAC 3 cut(s) 382, 486, 847
BslI CCNNNNNNNGG 4 cut(s) 779, 800, 830, 949
BsmAI GTCTC 2 cut(s) 319, 683
BsmBI CGTCTC 1 cut(s) 683
BsmFI GGGAC 3 cut(s) 382, 486, 847
BsnI GGCC 3 cut(s) 148, 205, 860
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 3 cut(s) 547, 820, 865
BspACI CCGC 3 cut(s) 236, 276, 520
BspANI GGCC 3 cut(s) 148, 205, 860
BspLI GGNNCC 3 cut(s) 352, 398, 549
BspPI GGATC 4 cut(s) 542, 555, 815, 860
BspT107I GGYRCC 1 cut(s) 350
BsrI ACTGG 3 cut(s) 177, 509, 943
BssECI CCNNGG 2 cut(s) 200, 855
BssMI GATC 3 cut(s) 547, 820, 865
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 1 cut(s) 63
BstENI CCTNNNNNAGG 1 cut(s) 798
BstF5I GGATG 3 cut(s) 424, 721, 769
BstH2I RGCGCY 1 cut(s) 895
BstHHI GCGC 1 cut(s) 894
BstKTI GATC 3 cut(s) 550, 823, 868
BstMAI GTCTC 2 cut(s) 319, 683
BstMBI GATC 3 cut(s) 547, 820, 865
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 1 cut(s) 591
BstNSI RCATGY 1 cut(s) 764
BstSCI CCNGG 2 cut(s) 589, 855
BstSFI CTRYAG 2 cut(s) 190, 481
BstSLI GKGCMC 1 cut(s) 353
BstV1I GCAGC 2 cut(s) 376, 826
BstV2I GAAGAC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuRI GGCC 3 cut(s) 148, 205, 860
BtsCI GGATG 3 cut(s) 424, 721, 769
BtsI GCAGTG 1 cut(s) 723
BtsIMutI CAGTG 1 cut(s) 723
CfoI GCGC 1 cut(s) 894
Cfr13I GGNCC 3 cut(s) 147, 396, 859
CviAII CATG 4 cut(s) 290, 752, 761, 863
DpnI GATC 3 cut(s) 549, 822, 867
DpnII GATC 3 cut(s) 547, 820, 865
DrdI GACNNNNNNGTC 1 cut(s) 881
DseDI GACNNNNNNGTC 1 cut(s) 881
EciI GGCGGA 1 cut(s) 251
Eco32I GATATC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 127
EcoNI CCTNNNNNAGG 1 cut(s) 798
EcoRII CCWGG 1 cut(s) 589
EcoRV GATATC 1 cut(s) 295
Esp3I CGTCTC 1 cut(s) 683
FaeI CATG 4 cut(s) 293, 755, 764, 866
FaqI GGGAC 3 cut(s) 382, 486, 847
FatI CATG 4 cut(s) 289, 751, 760, 862
Fnu4HI GCNGC 3 cut(s) 277, 365, 840
FokI GGATG 3 cut(s) 431, 708, 756
Fsp4HI GCNGC 3 cut(s) 277, 365, 840
FspBI CTAG 1 cut(s) 581
GlaI GCGC 1 cut(s) 893
GluI GCNGC 3 cut(s) 277, 365, 840
HaeII RGCGCY 1 cut(s) 895
HaeIII GGCC 3 cut(s) 148, 205, 860
HapII CCGG 1 cut(s) 857
HhaI GCGC 1 cut(s) 894
Hin1II CATG 4 cut(s) 293, 755, 764, 866
Hin6I GCGC 1 cut(s) 892
HinP1I GCGC 1 cut(s) 892
HindIII AAGCTT 2 cut(s) 139, 447
HinfI GANTC 2 cut(s) 474, 790
HpaII CCGG 1 cut(s) 857
HphI GGTGA 3 cut(s) 671, 713, 815
Hpy166II GTNNAC 1 cut(s) 502
Hpy188I TCNGA 2 cut(s) 201, 535
Hpy188III TCNNGA 6 cut(s) 302, 725, 824, 847, 886, 902
Hpy8I GTNNAC 1 cut(s) 502
Hpy99I CGWCG 4 cut(s) 60, 211, 214, 375
HpyAV CCTTC 1 cut(s) 780
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 6 cut(s) 220, 443, 527, 635, 721, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 4 cut(s) 293, 755, 764, 866
HspAI GCGC 1 cut(s) 892
Kzo9I GATC 3 cut(s) 547, 820, 865
LmnI GCTCC 1 cut(s) 954
Lsp1109I GCAGC 2 cut(s) 376, 826
LweI GCATC 3 cut(s) 684, 730, 754
MaeI CTAG 1 cut(s) 581
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 1 cut(s) 40
MalI GATC 3 cut(s) 549, 822, 867
MboI GATC 3 cut(s) 547, 820, 865
MfeI CAATTG 1 cut(s) 555
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 4 cut(s) 308, 555, 611, 810
MlyI GAGTC 1 cut(s) 468
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 5 cut(s) 17, 195, 298, 535, 561
MseI TTAA 2 cut(s) 777, 921
MslI CAYNNNNRTG 2 cut(s) 726, 750
MspI CCGG 1 cut(s) 857
MspR9I CCNGG 2 cut(s) 591, 857
MunI CAATTG 1 cut(s) 555
MvaI CCWGG 1 cut(s) 591
MwoI GCNNNNNNNGC 1 cut(s) 154
NciI CCSGG 1 cut(s) 857
NdeII GATC 3 cut(s) 547, 820, 865
NlaIII CATG 4 cut(s) 293, 755, 764, 866
NlaIV GGNNCC 3 cut(s) 352, 398, 549
NspI RCATGY 1 cut(s) 764
PfeI GAWTC 1 cut(s) 790
PflMI CCANNNNNTGG 2 cut(s) 779, 830
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 3 cut(s) 278, 366, 841
PleI GAGTC 1 cut(s) 468
PpsI GAGTC 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 589
PspGI CCWGG 1 cut(s) 589
PspN4I GGNNCC 3 cut(s) 352, 398, 549
PspPI GGNCC 3 cut(s) 147, 396, 859
PsuI RGATCY 1 cut(s) 547
RseI CAYNNNNRTG 2 cut(s) 726, 750
SaqAI TTAA 2 cut(s) 777, 921
SatI GCNGC 3 cut(s) 277, 365, 840
Sau3AI GATC 3 cut(s) 547, 820, 865
Sau96I GGNCC 3 cut(s) 147, 396, 859
SchI GAGTC 1 cut(s) 468
ScrFI CCNGG 2 cut(s) 591, 857
SduI GDGCHC 1 cut(s) 353
SfaNI GCATC 3 cut(s) 684, 730, 754
SfcI CTRYAG 2 cut(s) 190, 481
SinI GGWCC 1 cut(s) 396
SmiMI CAYNNNNRTG 2 cut(s) 726, 750
SmlI CTYRAG 1 cut(s) 902
SmoI CTYRAG 1 cut(s) 902
Sse9I AATT 4 cut(s) 308, 555, 611, 810
SsiI CCGC 3 cut(s) 236, 276, 520
SspMI CTAG 1 cut(s) 581
StyD4I CCNGG 2 cut(s) 589, 855
TaaI ACNGT 1 cut(s) 63
TaiI ACGT 1 cut(s) 373
TaqI TCGA 1 cut(s) 37
TaqII GACCGA 1 cut(s) 287
TasI AATT 4 cut(s) 308, 555, 611, 810
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 1 cut(s) 790
Tru1I TTAA 2 cut(s) 777, 921
Tru9I TTAA 2 cut(s) 777, 921
TscAI CASTG 1 cut(s) 723
TseI GCWGC 2 cut(s) 364, 839
TspDTI ATGAA 2 cut(s) 740, 822
TspGWI ACGGA 1 cut(s) 7
TspRI CASTG 1 cut(s) 723
Van91I CCANNNNNTGG 2 cut(s) 779, 830
VpaK11BI GGWCC 1 cut(s) 396
XagI CCTNNNNNAGG 1 cut(s) 798
XapI RAATTY 3 cut(s) 308, 611, 810
XceI RCATGY 1 cut(s) 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 776
XspI CTAG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.