Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

3789261 .. 3792012

Gene Structure 2752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG052000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1800 bp

ATGAGTGCTCAAATGGCAAAAGTGTACCGTTCAAGTGCTGTAGAGAAGTCATGGGGTCCATGGTGGAACAAAAGTGGCTTCTCTGTGGCAGATGCTAAAAGCTCCAAACCTCGCTTTGCGATGGCACTGCCGCCTCCCAATGTGACCGGACCACTTCACATGGGCCATGCTCTCACTGTTTGCATTCAGGACCCTTTCATCCGCTGGCGCCGAATGTCAGGCGACAACACCTTGTTTTTGCCAGGGATGGACCATGGTGGGATAGCAACTCAGGTTGTTGTGGAGAAGAAGCTCATGTCCGAAACGGGGAAAACAAGGCATGATCTTGGTAGAGATGAGTTCCTGAAACAAGTATGGAAGTGGAAAGAGGACCATGAGGGCACCATTTTGCAGCAGCTGCAACAGCTGGGAGCTTCTCTCGACTTTTCAAGACAGTGCTTTACAATGGATGAGAAGTGCTCAAAGGCTGTGGTAGAGGCTTTTGTAAGGCTTCACAACAAAGGACTTCTCTACAGGGATAATAGAATAGTGAACTGGGATTGCACATTGCGTACAGCAATTTCGGATATTGAGGTGGATTCTGTGGATATAAAAGGAAGGGAGTTACTGGATGTTCCTGGCTATGACAACAAGATTGAGGTCGGGCTGTTGACTACTTTCGCATACCCTCTAGAGTTTGGTGGTGAGATACTTGTGGCCACTACTAGAGTGGAAACAATGCTTGGTGATACCGGCATTGCTGTGCATCCTGATGACAAAAGATATGAGCATCTTCATGGAAAACATGCCATTCATCCATTTAATGAAAGGAGGATTCCTATAGTGTGTGATGCAGAGCTAGTTGATCCGGAGTTTGGGACTGGTGCAGTGAAGATCACCCCGGCGCATGACCCTAATGACTTCGAAGTAGGCAAGCGTCATGGTCTTGAGTTCATCAACATCTTCACTGACGATGGGAAAATAAACCAGAATGGTGGAGAAAGATTTGCAGGGATGCCGCGTTATGAAGCAAGAGAGGCAGTGACTGAAGCACTGAAGGAGAAGGGGCTGTCTAATGAGAAGCTTTCAAAGGGAAACTTGGACAAGAAGGAAATAGAAGTTGCGAAAGAGGGGCAAAAGAAGTCCTTTCCTAATGGTATTGAAGAATGTGGTGCAGATGCTCTTCGTTTTGCTCTCATTACCTACACCCATCAGGCTGAGAATATAAATCTAGACATCAACAGGGTGGTGGGTTATCGTCACTGGTGCAACAAACTGTGGAATGCAGTAAGGTTTGCTATGCTCAAACTTGGGGATGGTTATGTTCCACCTTCGAGTGAAATTAATCCGAATGAGCTTCCATTCATTTGCCAGTGGATCCTCTCAGTACTAAACAAAGCAATTGACAAAACTGTTTCGTCAATGGAGTCCTATAAGCTGTCAGATGCAGCCAAGGCTGTGTATAGTTGGTGGCAGAATCAGTTGTGTGATATTTTCATCGAAGCCATCAAGCCATACTTTGCTGAGTGCTGGAAGAATGAAGAAGTGGAGACTCAGATGGATAATGTTATTATTTCGGTTGTGAATTCTATACGCTCACTTGCAAAAGAAGGTCGTGAACGACGAGCAGCATTTGTGCTTAGTGGGATAAGAGAAGAGAGGGAGTTGATGTGCAGTCAGTGTGCAATCATTGAAAAGTTAGCGAATGTCTCACAGTTGGCGATAATCCATGAAGAGGGTGCTGCTCCAACTGGATGTGCAGAGTCAAAAGTGAGTGACAATCTGTCTGTTTATCTGAAGATATACAGTGATGAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

599

Amino Acids

67.43

Weight (kDa)

5.82

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	21 - 198	8.3e-60	tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g	PF09334	46 - 98	7.4e-07	tRNA synthetases class I (M)
tRNA-synt_1_2	PF13603	260 - 318	7.4e-08	Leucyl-tRNA synthetase, editing domain
Anticodon_1	PF08264	451 - 502	5.3e-11	Anticodon-binding domain of tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	207, 380
AccII	CGCG	1 cut(s)	1000
AccIII	TCCGGA	1 cut(s)	847
AciI	CCGC	3 cut(s)	131, 202, 998
AclWI	GGATC	3 cut(s)	839, 1351, 1364
AcoI	YGGCCR	1 cut(s)	696
AcsI	RAATTY	1 cut(s)	1564
AcuI	CTGAAG	3 cut(s)	1047, 1055, 1796
AcyI	GRCGYC	1 cut(s)	208
AfaI	GTAC	3 cut(s)	26, 553, 1368
AfiI	CCNNNNNNNGG	3 cut(s)	306, 854, 1714
AgsI	TTSAA	5 cut(s)	33, 429, 1068, 1142, 1673
AhdI	GACNNNNNGTC	1 cut(s)	1762
AjnI	CCWGG	2 cut(s)	241, 616
AjuI	GAANNNNNNNTTGG	2 cut(s)	705, 737
AluBI	AGCT	9 cut(s)	102, 292, 397, 406, 413, 838, 1063, 1336, 1417
AluI	AGCT	9 cut(s)	102, 292, 397, 406, 413, 838, 1063, 1336, 1417
Alw21I	GWGCWC	2 cut(s)	10, 461
Alw26I	GTCTC	2 cut(s)	1523, 1693
AlwI	GGATC	3 cut(s)	839, 1351, 1364
AlwNI	CAGNNNCTG	2 cut(s)	397, 1025
Aor13HI	TCCGGA	1 cut(s)	847
AoxI	GGCC	2 cut(s)	163, 696
ApeKI	GCWGC	6 cut(s)	391, 394, 397, 1427, 1607, 1721
ApoI	RAATTY	1 cut(s)	1564
AseI	ATTAAT	1 cut(s)	1323
AspLEI	GCGC	2 cut(s)	210, 886
AspS9I	GGNCC	6 cut(s)	56, 149, 163, 190, 250, 370
AsuC2I	CCSGG	1 cut(s)	881
AsuHPI	GGTGA	3 cut(s)	695, 737, 868
AsuII	TTCGAA	1 cut(s)	903
AvaII	GGWCC	5 cut(s)	56, 149, 190, 250, 370
BaeGI	GKGCMC	1 cut(s)	383
BalI	TGGCCA	1 cut(s)	698
BamHI	GGATCC	1 cut(s)	1356
BanI	GGYRCC	2 cut(s)	207, 380
Bbv12I	GWGCWC	2 cut(s)	10, 461
BbvI	GCAGC	6 cut(s)	384, 403, 406, 1439, 1619, 1708
BccI	CCATC	7 cut(s)	115, 241, 947, 1197, 1289, 1493, 1531
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	2 cut(s)	243, 618
BcnI	CCSGG	1 cut(s)	881
BcoDI	GTCTC	2 cut(s)	1523, 1693
BfaI	CTAG	4 cut(s)	671, 705, 839, 1211
BfmI	CTRYAG	3 cut(s)	39, 511, 819
BfoI	RGCGCY	1 cut(s)	211
BisI	GCNGC	8 cut(s)	131, 392, 395, 398, 998, 1428, 1608, 1722
BlsI	GCNGC	8 cut(s)	132, 393, 396, 399, 999, 1429, 1609, 1723
BmcAI	AGTACT	1 cut(s)	1368
Bme1390I	CCNGG	3 cut(s)	243, 618, 881
Bme18I	GGWCC	5 cut(s)	56, 149, 190, 250, 370
BmeRI	GACNNNNNGTC	1 cut(s)	1762
BmgT120I	GGNCC	6 cut(s)	56, 149, 163, 190, 250, 370
BmiI	GGNNCC	5 cut(s)	57, 192, 209, 382, 1358
BmrFI	CCNGG	3 cut(s)	243, 618, 881
BmrI	ACTGGG	1 cut(s)	544
BmsI	GCATC	7 cut(s)	82, 754, 778, 820, 984, 1147, 1414
BmuI	ACTGGG	1 cut(s)	544
BplI	GAGNNNNNCTC	4 cut(s)	402, 434, 443, 475
Bpu14I	TTCGAA	1 cut(s)	903
BpuEI	CTTGAG	1 cut(s)	947
BpuMI	CCSGG	1 cut(s)	881
BsaHI	GRCGYC	1 cut(s)	208
BsaJI	CCNNGG	5 cut(s)	59, 242, 253, 879, 1431
BsaWI	WCCGGW	2 cut(s)	146, 847
BsaXI	ACNNNNNCTCC	2 cut(s)	1634, 1664
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 854, 1714
Bse118I	RCCGGY	1 cut(s)	731
Bse1I	ACTGG	6 cut(s)	539, 612, 865, 1247, 1351, 1735
Bse3DI	GCAATG	2 cut(s)	545, 735
BseAI	TCCGGA	1 cut(s)	847
BseBI	CCWGG	2 cut(s)	243, 618
BseDI	CCNNGG	5 cut(s)	59, 242, 253, 879, 1431
BseGI	GGATG	9 cut(s)	198, 252, 454, 616, 745, 793, 999, 1300, 1739
BseLI	CCNNNNNNNGG	3 cut(s)	306, 854, 1714
BseMI	GCAATG	2 cut(s)	545, 735
BseMII	CTCAG	5 cut(s)	284, 1188, 1377, 1494, 1547
BseNI	ACTGG	6 cut(s)	539, 612, 865, 1247, 1351, 1735
BseSI	GKGCMC	1 cut(s)	383
BseXI	GCAGC	6 cut(s)	384, 403, 406, 1439, 1619, 1708
BseYI	CCCAGC	1 cut(s)	406
BsgI	GTGCAG	4 cut(s)	885, 1173, 1672, 1758
Bsh1236I	CGCG	1 cut(s)	1000
BshFI	GGCC	2 cut(s)	165, 698
BshNI	GGYRCC	2 cut(s)	207, 380
BsiHKAI	GWGCWC	2 cut(s)	10, 461
BsiSI	CCGG	4 cut(s)	147, 732, 848, 881
BslFI	GGGAC	1 cut(s)	871
BslI	CCNNNNNNNGG	3 cut(s)	306, 854, 1714
BsmAI	GTCTC	2 cut(s)	1523, 1693
BsmFI	GGGAC	1 cut(s)	871
BsmI	GAATGC	2 cut(s)	183, 1267
BsnI	GGCC	2 cut(s)	165, 698
Bsp119I	TTCGAA	1 cut(s)	903
Bsp1286I	GDGCHC	3 cut(s)	10, 383, 461
Bsp13I	TCCGGA	1 cut(s)	847
Bsp143I	GATC	4 cut(s)	322, 844, 873, 1356
Bsp19I	CCATGG	2 cut(s)	59, 253
BspACI	CCGC	3 cut(s)	131, 202, 998
BspANI	GGCC	2 cut(s)	165, 698
BspCNI	CTCAG	5 cut(s)	283, 1189, 1376, 1495, 1546
BspEI	TCCGGA	1 cut(s)	847
BspFNI	CGCG	1 cut(s)	1000
BspLI	GGNNCC	5 cut(s)	57, 192, 209, 382, 1358
BspPI	GGATC	3 cut(s)	839, 1351, 1364
BspQI	GCTCTTC	1 cut(s)	1167
BspT104I	TTCGAA	1 cut(s)	903
BspT107I	GGYRCC	2 cut(s)	207, 380
BsrDI	GCAATG	2 cut(s)	545, 735
BsrFI	RCCGGY	1 cut(s)	731
BsrI	ACTGG	6 cut(s)	539, 612, 865, 1247, 1351, 1735
BssAI	RCCGGY	1 cut(s)	731
BssECI	CCNNGG	5 cut(s)	59, 242, 253, 879, 1431
BssMI	GATC	4 cut(s)	322, 844, 873, 1356
BssNI	GRCGYC	1 cut(s)	208
BssT1I	CCWWGG	3 cut(s)	59, 253, 1431
Bst2UI	CCWGG	2 cut(s)	243, 618
Bst4CI	ACNGT	7 cut(s)	29, 178, 435, 1257, 1393, 1695, 1787
Bst6I	CTCTTC	3 cut(s)	1167, 1629, 1707
BstACI	GRCGYC	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstBI	TTCGAA	1 cut(s)	903
BstC8I	GCNNGC	2 cut(s)	206, 914
BstDEI	CTNAG	6 cut(s)	270, 1197, 1363, 1503, 1533, 1619
BstDSI	CCRYGG	2 cut(s)	59, 253
BstF5I	GGATG	9 cut(s)	198, 252, 454, 616, 745, 793, 999, 1300, 1739
BstFNI	CGCG	1 cut(s)	1000
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	210, 886
BstKTI	GATC	4 cut(s)	325, 847, 876, 1359
BstMAI	GTCTC	2 cut(s)	1523, 1693
BstMBI	GATC	4 cut(s)	322, 844, 873, 1356
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 397, 403, 1016, 1433
BstNI	CCWGG	2 cut(s)	243, 618
BstNSI	RCATGY	1 cut(s)	788
BstSCI	CCNGG	3 cut(s)	241, 616, 879
BstSFI	CTRYAG	3 cut(s)	39, 511, 819
BstSLI	GKGCMC	1 cut(s)	383
BstUI	CGCG	1 cut(s)	1000
BstV1I	GCAGC	6 cut(s)	384, 403, 406, 1439, 1619, 1708
BstX2I	RGATCY	1 cut(s)	1356
BstXI	CCANNNNNNTGG	1 cut(s)	974
BstYI	RGATCY	1 cut(s)	1356
BsuRI	GGCC	2 cut(s)	165, 698
BtgI	CCRYGG	2 cut(s)	59, 253
BtgZI	GCGATG	1 cut(s)	134
BtsCI	GGATG	9 cut(s)	198, 252, 454, 616, 745, 793, 999, 1300, 1739
BtsI	GCAGTG	3 cut(s)	125, 873, 1026
Cac8I	GCNNGC	2 cut(s)	206, 914
CaiI	CAGNNNCTG	2 cut(s)	397, 1025
CfoI	GCGC	2 cut(s)	210, 886
Cfr10I	RCCGGY	1 cut(s)	731
Cfr13I	GGNCC	6 cut(s)	56, 149, 163, 190, 250, 370
CseI	GACGC	1 cut(s)	905
Csp6I	GTAC	3 cut(s)	25, 552, 1367
CspCI	CAANNNNNGTGG	2 cut(s)	450, 485
CviQI	GTAC	3 cut(s)	25, 552, 1367
DdeI	CTNAG	6 cut(s)	270, 1197, 1363, 1503, 1533, 1619
DinI	GGCGCC	1 cut(s)	209
DpnI	GATC	4 cut(s)	324, 846, 875, 1358
DpnII	GATC	4 cut(s)	322, 844, 873, 1356
DriI	GACNNNNNGTC	1 cut(s)	1762
EaeI	YGGCCR	1 cut(s)	696
Eam1104I	CTCTTC	3 cut(s)	1167, 1629, 1707
Eam1105I	GACNNNNNGTC	1 cut(s)	1762
EarI	CTCTTC	3 cut(s)	1167, 1629, 1707
Eco130I	CCWWGG	3 cut(s)	59, 253, 1431
Eco47I	GGWCC	5 cut(s)	56, 149, 190, 250, 370
Eco57I	CTGAAG	3 cut(s)	1047, 1055, 1796
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	1564
EcoRII	CCWGG	2 cut(s)	241, 616
EcoT14I	CCWWGG	3 cut(s)	59, 253, 1431
EgeI	GGCGCC	1 cut(s)	209
EheI	GGCGCC	1 cut(s)	209
ErhI	CCWWGG	3 cut(s)	59, 253, 1431
FalI	AAGNNNNNCTT	6 cut(s)	1061, 1093, 1109, 1141, 1481, 1513
FaqI	GGGAC	1 cut(s)	871
Fnu4HI	GCNGC	8 cut(s)	131, 392, 395, 398, 998, 1428, 1608, 1722
FokI	GGATG	9 cut(s)	185, 259, 461, 623, 732, 780, 1006, 1307, 1746
Fsp4HI	GCNGC	8 cut(s)	131, 392, 395, 398, 998, 1428, 1608, 1722
FspBI	CTAG	4 cut(s)	671, 705, 839, 1211
GlaI	GCGC	2 cut(s)	209, 885
GluI	GCNGC	8 cut(s)	131, 392, 395, 398, 998, 1428, 1608, 1722
GsaI	CCCAGC	1 cut(s)	410
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	165, 698
HapII	CCGG	4 cut(s)	147, 732, 848, 881
HgaI	GACGC	1 cut(s)	905
HhaI	GCGC	2 cut(s)	210, 886
Hin1I	GRCGYC	1 cut(s)	208
Hin6I	GCGC	2 cut(s)	208, 884
HinP1I	GCGC	2 cut(s)	208, 884
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HindIII	AAGCTT	1 cut(s)	1061
HinfI	GANTC	6 cut(s)	578, 814, 1406, 1456, 1531, 1742
HpaII	CCGG	4 cut(s)	147, 732, 848, 881
HphI	GGTGA	3 cut(s)	695, 737, 868
Hpy166II	GTNNAC	4 cut(s)	25, 532, 651, 1598
Hpy188I	TCNGA	6 cut(s)	301, 565, 1329, 1423, 1536, 1776
Hpy8I	GTNNAC	4 cut(s)	25, 532, 651, 1598
Hpy99I	CGWCG	1 cut(s)	1605
HpyAV	CCTTC	6 cut(s)	591, 1030, 1036, 1081, 1320, 1583
HpyCH4III	ACNGT	7 cut(s)	29, 178, 435, 1257, 1393, 1695, 1787
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 397, 403, 1016, 1433
HpyF3I	CTNAG	6 cut(s)	270, 1197, 1363, 1503, 1533, 1619
Hsp92I	GRCGYC	1 cut(s)	208
HspAI	GCGC	2 cut(s)	208, 884
KasI	GGCGCC	1 cut(s)	207
Kpn2I	TCCGGA	1 cut(s)	847
Kzo9I	GATC	4 cut(s)	322, 844, 873, 1356
LguI	GCTCTTC	1 cut(s)	1167
LmnI	GCTCC	3 cut(s)	107, 410, 1729
Lsp1109I	GCAGC	6 cut(s)	384, 403, 406, 1439, 1619, 1708
LweI	GCATC	7 cut(s)	82, 754, 778, 820, 984, 1147, 1414
MaeI	CTAG	4 cut(s)	671, 705, 839, 1211
MaeIII	GTNAC	5 cut(s)	142, 603, 1021, 1238, 1754
MalI	GATC	4 cut(s)	324, 846, 875, 1358
MboI	GATC	4 cut(s)	322, 844, 873, 1356
MfeI	CAATTG	1 cut(s)	1380
MflI	RGATCY	1 cut(s)	1356
MhlI	GDGCHC	3 cut(s)	10, 383, 461
MlsI	TGGCCA	1 cut(s)	698
MluCI	AATT	5 cut(s)	558, 1320, 1380, 1564, 1795
MluNI	TGGCCA	1 cut(s)	698
Mly113I	GGCGCC	1 cut(s)	208
MlyI	GAGTC	3 cut(s)	1415, 1525, 1751
MmeI	TCCRAC	1 cut(s)	1751
Mox20I	TGGCCA	1 cut(s)	698
MroI	TCCGGA	1 cut(s)	847
MscI	TGGCCA	1 cut(s)	698
MseI	TTAA	3 cut(s)	801, 1323, 1798
MslI	CAYNNNNRTG	3 cut(s)	740, 750, 774
Msp20I	TGGCCA	1 cut(s)	698
MspA1I	CMGCKG	3 cut(s)	204, 397, 406
MspI	CCGG	4 cut(s)	147, 732, 848, 881
MspR9I	CCNGG	3 cut(s)	243, 618, 881
MunI	CAATTG	1 cut(s)	1380
Mva1269I	GAATGC	2 cut(s)	183, 1267
MvaI	CCWGG	2 cut(s)	243, 618
MvnI	CGCG	1 cut(s)	1000
MwoI	GCNNNNNNNGC	5 cut(s)	14, 397, 403, 1016, 1433
NarI	GGCGCC	1 cut(s)	208
NciI	CCSGG	1 cut(s)	881
NcoI	CCATGG	2 cut(s)	59, 253
NdeII	GATC	4 cut(s)	322, 844, 873, 1356
NlaIV	GGNNCC	5 cut(s)	57, 192, 209, 382, 1358
NmuCI	GTSAC	4 cut(s)	142, 1021, 1238, 1754
NspI	RCATGY	1 cut(s)	788
NspV	TTCGAA	1 cut(s)	903
PciSI	GCTCTTC	1 cut(s)	1167
PcsI	WCGNNNNNNNCGW	1 cut(s)	1600
PctI	GAATGC	2 cut(s)	183, 1267
PfeI	GAWTC	3 cut(s)	578, 814, 1456
PkrI	GCNGC	8 cut(s)	132, 393, 396, 399, 999, 1429, 1609, 1723
PleI	GAGTC	3 cut(s)	1414, 1525, 1750
PluTI	GGCGCC	1 cut(s)	211
PpsI	GAGTC	3 cut(s)	1414, 1525, 1750
PpuMI	RGGWCCY	1 cut(s)	190
PshBI	ATTAAT	1 cut(s)	1323
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	241, 616
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	2 cut(s)	241, 616
PspN4I	GGNNCC	5 cut(s)	57, 192, 209, 382, 1358
PspPI	GGNCC	6 cut(s)	56, 149, 163, 190, 250, 370
PspPPI	RGGWCCY	1 cut(s)	190
PstNI	CAGNNNCTG	2 cut(s)	397, 1025
PsuI	RGATCY	1 cut(s)	1356
PvuII	CAGCTG	2 cut(s)	397, 406
RsaI	GTAC	3 cut(s)	26, 553, 1368
RsaNI	GTAC	3 cut(s)	25, 552, 1367
RseI	CAYNNNNRTG	3 cut(s)	740, 750, 774
SapI	GCTCTTC	1 cut(s)	1167
SaqAI	TTAA	3 cut(s)	801, 1323, 1798
SatI	GCNGC	8 cut(s)	131, 392, 395, 398, 998, 1428, 1608, 1722
Sau3AI	GATC	4 cut(s)	322, 844, 873, 1356
Sau96I	GGNCC	6 cut(s)	56, 149, 163, 190, 250, 370
ScaI	AGTACT	1 cut(s)	1368
SchI	GAGTC	3 cut(s)	1415, 1525, 1751
ScrFI	CCNGG	3 cut(s)	243, 618, 881
SduI	GDGCHC	3 cut(s)	10, 383, 461
SfaNI	GCATC	7 cut(s)	82, 754, 778, 820, 984, 1147, 1414
SfcI	CTRYAG	3 cut(s)	39, 511, 819
SfoI	GGCGCC	1 cut(s)	209
SfuI	TTCGAA	1 cut(s)	903
SinI	GGWCC	5 cut(s)	56, 149, 190, 250, 370
SmiMI	CAYNNNNRTG	3 cut(s)	740, 750, 774
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
Sse9I	AATT	5 cut(s)	558, 1320, 1380, 1564, 1795
SsiI	CCGC	3 cut(s)	131, 202, 998
SspDI	GGCGCC	1 cut(s)	207
SspMI	CTAG	4 cut(s)	671, 705, 839, 1211
StyD4I	CCNGG	3 cut(s)	241, 616, 879
StyI	CCWWGG	3 cut(s)	59, 253, 1431
TaaI	ACNGT	7 cut(s)	29, 178, 435, 1257, 1393, 1695, 1787
TaqI	TCGA	4 cut(s)	420, 903, 1313, 1479
TasI	AATT	5 cut(s)	558, 1320, 1380, 1564, 1795
TatI	WGTACW	1 cut(s)	1366
TauI	GCSGC	2 cut(s)	133, 1000
TfiI	GAWTC	3 cut(s)	578, 814, 1456
Tru1I	TTAA	3 cut(s)	801, 1323, 1798
Tru9I	TTAA	3 cut(s)	801, 1323, 1798
TseFI	GTSAC	4 cut(s)	142, 1021, 1238, 1754
TseI	GCWGC	6 cut(s)	391, 394, 397, 1427, 1607, 1721
Tsp45I	GTSAC	4 cut(s)	142, 1021, 1238, 1754
VpaK11BI	GGWCC	5 cut(s)	56, 149, 190, 250, 370
VspI	ATTAAT	1 cut(s)	1323
XapI	RAATTY	1 cut(s)	1564
XbaI	TCTAGA	2 cut(s)	670, 1210
XceI	RCATGY	1 cut(s)	788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	706
XspI	CTAG	4 cut(s)	671, 705, 839, 1211
ZrmI	AGTACT	1 cut(s)	1368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.