Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005294.1

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Forward (+)

134876 .. 135282

Gene Structure 407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005294.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgctcggtgatactgctatcgcagtgcatcctgatgacaaaagatataagcatcttcacggtaaacatgcaatccatccatttaatggaagaaggattcctataataagtgatgaaattcttgttgatccagagtttgggactagtgctgtcaagattaccccggcccatgatcctcatgagtttatggttgggaagcgccataatcttgagtttatcaacatctttactgatgatggaaaaataaaccagtatgggggagcatttgacagggatgccacgcttcagagcccgagaggctgtgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

102

Amino Acids

11.44

Weight (kDa)

6.21

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	86, 137
AclWI	GGATC	2 cut(s)	122, 167
AcsI	RAATTY	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	269
AfiI	CCNNNNNNNGG	3 cut(s)	86, 137, 256
AhlI	ACTAGT	1 cut(s)	143
AlwI	GGATC	2 cut(s)	122, 167
Ama87I	CYCGRG	1 cut(s)	292
AoxI	GGCC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	293
BccI	CCATC	2 cut(s)	84, 230
BcnI	CCSGG	1 cut(s)	164
BcuI	ACTAGT	1 cut(s)	143
BfaI	CTAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	202
BglI	GCCNNNNNGGC	1 cut(s)	297
Bme1390I	CCNGG	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	3 cut(s)	37, 61, 265
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 137, 256
Bse1I	ACTGG	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	28, 76, 280
BseLI	CCNNNNNNNGG	3 cut(s)	86, 137, 256
BseNI	ACTGG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	3 cut(s)	86, 137, 256
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	2 cut(s)	127, 172
BspANI	GGCC	1 cut(s)	167
BspHI	TCATGA	1 cut(s)	178
BspPI	GGATC	2 cut(s)	122, 167
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	2 cut(s)	127, 172
Bst4CI	ACNGT	1 cut(s)	62
BstF5I	GGATG	3 cut(s)	28, 76, 280
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	2 cut(s)	130, 175
BstMBI	GATC	2 cut(s)	127, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	28, 76, 280
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	166
CviAII	CATG	3 cut(s)	68, 170, 179
CviJI	RGCY	3 cut(s)	167, 291, 300
CviKI_1	RGCY	3 cut(s)	167, 291, 300
DpnI	GATC	2 cut(s)	129, 174
DpnII	GATC	2 cut(s)	127, 172
Eco24I	GRGCYC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	293
FaeI	CATG	3 cut(s)	71, 173, 182
FaiI	YATR	8 cut(s)	48, 69, 104, 171, 180, 188, 204, 255
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	3 cut(s)	67, 169, 178
FokI	GGATG	3 cut(s)	15, 63, 287
FriOI	GRGCYC	1 cut(s)	293
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	1 cut(s)	200
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	3 cut(s)	71, 173, 182
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	5 cut(s)	32, 131, 154, 179, 209
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	28, 71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	71, 173, 182
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	127, 172
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	5 cut(s)	45, 144, 177, 256, 263
LweI	GCATC	3 cut(s)	37, 61, 265
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	2 cut(s)	129, 174
MboI	GATC	2 cut(s)	127, 172
MboII	GAAGA	2 cut(s)	47, 102
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	1 cut(s)	117
MnlI	CCTC	2 cut(s)	186, 290
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	33
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	297
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	2 cut(s)	127, 172
NlaIII	CATG	3 cut(s)	71, 173, 182
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	71
PagI	TCATGA	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	97
PflMI	CCANNNNNTGG	2 cut(s)	86, 137
PspPI	GGNCC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	127, 172
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	293
SfaNI	GCATC	3 cut(s)	37, 61, 265
SmiMI	CAYNNNNRTG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SpeI	ACTAGT	1 cut(s)	143
Sse9I	AATT	1 cut(s)	117
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	62
TasI	AATT	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	2 cut(s)	86, 137
XapI	RAATTY	1 cut(s)	117
XceI	RCATGY	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.