MD15G1433500.v1.1

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
53373191 .. 53381559
8369 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1433500.v1.1.491

Sequence Viewer

Length: 3126 bp
ATGGAGGAAGAGCCAAATTTGATGAAGAAAAAGAAAAAGGAAGCGAAGGCAAAAGAGAAGGAATTGAAGAAGAAAAAAGCTTTGGAGAAAGCTATCAAGCTTCAGATCATCCAGGAGCAACAAGCATGTGCTTCTACTTCGAAGACGAGTAAAAAGAAGAATGTAAGGCTTTGGGATGATGAAGATGAAAATGCAAAGGATCCAGGGACTCCATTTGGCGAGAAGAAAAGGATGGCTAGTCAAATGACGACAGGGTACTATCCGAAGGCTGTAGAGAAGTCGTGGTATGAGTGGTGGGAGAAAATGGGGTTCTTCTCAGCGGAATCTAACAGCTCCAAACCTCCATTTGTGATTGTTTTGCCGCCACCCAATGTAACTGGTACCCTTCACATAGGCCATGCGCTCACCGCTGCTATTGAGGACACTATCATTCGTTGGCGGAGAATGTCCGGTTACAATGCCATGTGGCTGCCTGGAATGGACCATGCCGGGATAGCAACACAGGTTGTTGTTGAAAAGAAGCTTATGAGTGAGAAAAAAATTACCAGACATGATATAGGTCGCGATGCATTTGTGGCTGAGGTGTGGAATTGGAAATTAAAGCACGGGAGCACCATCTTACAGCAGCTACGTCGTTTGGGAGCTTCTTTGGATTGGTCCCGCGAGTGCTTCACGATGGATGAGAAAAGATCAAGTGCTGTGGCAGAGGCTTTTGTAAGGCTTCATAAGCAAGGGCTTCTCTACAGGGATAATCGCATAGTCAATTGGGATTGTGGGTTGCTTACAGCAATATCTGACATTGAGGTGGATTATATAGATATTCGAGAAAGGACATTACTGAGGGTTCCTGGATATGAGAACCCTGTTGAATTTGGCGTGTTAACTTCATTTGCTTACCCAATGGAGGAAGAACTTGGTGAGATTGTGGTGGCCACCACTAGAGTGGAAACTATCCTTGGTGATACTGCTATCGCTGTACATCCTAATGATGAGAGGTATAGACACCTTCATGGAAAACATGCCATCCATCCTTTCAATGGAAGAAGAATTCCTATAATATGTGATGAAATTCTCGTGGATCCAGCGTTCGGTACTGGTGCTGTGAAGATTACCCCAGCCCATGATCCTAATGACTTTAATGTCGGGAAGCGCCATAACCTTGAGTTCATTAACATCTTTACTGATGAAGGAAAAATAAATCAGGAGGGTGGAGAATTTGCAGGAATGCCACGTTTCCAAGCCCGAGAGGCAGTGACTGAAGCACTAAAGAAGAAGGGCCTCTTTAAAGAAGCAACGAACAATGAGATGCGCCTTGGTATTTGCTCTAGAAGCAAGGATGTTGTGGAACCCAAGATTAAACCTCAATGGTATGTCAAATGCAGTGGTATGGGAAAGCAAGCCCTCGATGCTGCCGTAGATAGTGAAAATAGGAAGCTTGAGATCATCCCAAGACAATATACTGCTGAATGGGAGAGATGGCTTGAAAACATTCGTGACTGGTGCATCTCGAGGCAACTGTGGTGGGGTCACCGTGTTCCCGCATGGTATGTTGTTTATGAGAGTGATAAGGCGGAGGATTTTGGAGTACTTGATGATCGATGGGTGGTTGCAAGGAATGAGGAAGAGGCTCGAGCACAGGCTAGTGGTAGATATGAGGGGAACTTTCAATTGATTCAGGATCCTGATGTCCTTGACACTTGGTTTTCTTCTGCTCTCTTCCCATTGTCTGTGTTGGGCTGGCCAGAGGACACAGAAGACCTAAAGGCATTTTATCCGACTTCACTTCTTGAAACTGGTCACGATATCCTCTTTTTCTGGGTTGCTCGTATGGTAATGCTTGGAATGACATTGGGCGGCGATGTACCTTTTACAAAGGTATATTTGCACCCTATGATTCGTGATGCACATGGGCGTAAAATGTCAAAATCCTTGGGGAATGTCATTGATCCACTTGATGTGATCAATGGTGTTGAACTTGAAGGTCTACAGAAGAAGCTTTTAGAGGGAAATTTGGATGCCAAGGAAGTAGCTGTCTCGGAAGAAGGGCTAAAGAAAGACTTTCCTAAGGGGATTATGGAATGTGGCGCAGATGCTCTCCGCTTTGCTCTAGTGTCTTACACTGCTCAGCATGATAAGATAAATCTGGATATCAAAAGGGTGGAGGGCTACAAAAACTGGTGTAATAAATTGTGGAATGTAGTAAGGTTTTCTCTGAGCATACTTGGGAATGACTATGTTCCGCCCTCAACTGTAAATCCAGATGTGTTCCCATTTAGTTGCCAATGGATACTCTCGGTACTGAACAAAGCCATTTCCAAAACTGTTTTGTCACTGGAATCGTACGAATTATCAGATGCAGCCACTGCAGTGCATGCTTGGTGGCAGTACCAGTTGTGTGATGTTTTCGTTGAAGCTATCAAGCCCTACTTTTCTGGTAACGATCCAAAGTTTGCATCTGAAAGGGGTTGTGCACAAGACACTCTATGGTTATGTCTTGACAATGGGCTACGGTTGCTTCATCCGTTTATGCCATTTGTCACAGAAGAACTGTGGCAGCGTCTTCCATCTTCAGGGGATCACAAGAGAGAAACGTCAATTATGATATGCGAATATCCATCCATCATAGAGTGCTGGACAAACGAAAAGGTGGAATCTGAGATGAACCTTACAGAGTCTATTGTGCAATCTCTCCGTTCACTCGCAAAAGAAAGTCATGAAAGGCGATCAGCTATTGTGATTTGTAGAACAATTTCGGATTGGAAGATAATCTGCAGCCATCAACGGGAGATTGAAACTCTTGCCCATTTGTCATCTTTGACGGTAATGAATGAGGAAGATGGCTTTCCCACCCCTACCGAATCAGATGGATACGTGATGTCTACTGTAAATAAAAACATTTTGGTTTTTCTGAACGTTCCAAGGGTAAAGGCAGACCCTGAAACGATCCGCGAGAAGATGGAAAGACTCACACTGGAACGGGAAAAGCTGTGGTTGATGATAAATTCTCCAGGCTACAAGGAAAAGACTAATGAGAAGATTCAACAAGCTAATACTGACAAGCTTCAGTCCTTGGACGGGGAGATCATGTCTTTGGAAAGGGATGGAAATAATCTCCTTGGAGACTAG

Protein Analysis

1042

Amino Acids

118.98

Weight (kDa)

5.82

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1 PF00133 95 - 715 5.6e-143 tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g PF09334 121 - 183 2.7e-06 tRNA synthetases class I (M)
tRNA-synt_1_2 PF13603 337 - 398 3.5e-07 Leucyl-tRNA synthetase, editing domain
Anticodon_1 PF08264 761 - 903 1.2e-31 Anticodon-binding domain of tRNA ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000332)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14610 AT1G27160
fragaria_vesca FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1139
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 380
AccI GTMKAC 2 cut(s) 1984, 2879
AccII CGCG 3 cut(s) 564, 663, 2949
AclI AACGTT 1 cut(s) 2913
AcoI YGGCCR 2 cut(s) 930, 1739
AcsI RAATTY 7 cut(s) 16, 869, 1047, 1068, 1214, 2008, 3001
AcuI CTGAAG 4 cut(s) 86, 1278, 2553, 3047
AfaI GTAC 9 cut(s) 257, 382, 978, 1093, 1587, 1863, 2298, 2342, 2387
AfiI CCNNNNNNNGG 6 cut(s) 904, 1037, 1088, 2570, 2782, 3075
AjnI CCWGG 5 cut(s) 111, 202, 472, 847, 3007
AjuI GAANNNNNNNTTGG 4 cut(s) 65, 97, 939, 971
AleI CACNNNNGTG 2 cut(s) 941, 2366
AloI GAACNNNNNNTCC 2 cut(s) 1070, 1102
Alw21I GWGCWC 3 cut(s) 614, 1636, 2473
Alw26I GTCTC 2 cut(s) 2038, 3114
Alw44I GTGCAC 1 cut(s) 2469
AlwNI CAGNNNCTG 3 cut(s) 1256, 2363, 2936
Ama87I CYCGRG 3 cut(s) 1242, 1507, 1629
AoxI GGCC 4 cut(s) 394, 930, 1276, 1739
ApaLI GTGCAC 1 cut(s) 2469
ApeKI GCWGC 7 cut(s) 410, 469, 625, 1409, 2357, 2554, 2772
ApoI RAATTY 7 cut(s) 16, 869, 1047, 1068, 1214, 2008, 3001
Asp700I GAANNNNTTC 2 cut(s) 1488, 2749
Asp718I GGTACC 1 cut(s) 380
AspLEI GCGC 4 cut(s) 403, 1152, 1311, 2087
AspS9I GGNCC 3 cut(s) 481, 657, 1276
AsuC2I CCSGG 1 cut(s) 490
AsuHPI GGTGA 4 cut(s) 397, 929, 971, 1520
AsuII TTCGAA 1 cut(s) 140
AvaI CYCGRG 3 cut(s) 1242, 1507, 1629
AvaII GGWCC 2 cut(s) 481, 657
AxyI CCTNAGG 1 cut(s) 2064
BaeGI GKGCMC 1 cut(s) 2473
BalI TGGCCA 2 cut(s) 932, 1741
BamHI GGATCC 3 cut(s) 199, 1078, 1678
BanI GGYRCC 1 cut(s) 380
BauI CACGAG 1 cut(s) 1073
BbsI GAAGAC 3 cut(s) 149, 1761, 2552
Bbv12I GWGCWC 3 cut(s) 614, 1636, 2473
BbvCI CCTCAGC 1 cut(s) 579
BbvI GCAGC 7 cut(s) 397, 456, 637, 1396, 2369, 2566, 2784
BceAI ACGGC 1 cut(s) 1397
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 5 cut(s) 113, 204, 474, 849, 3009
BciVI GTATCC 2 cut(s) 2280, 2861
BclI TGATCA 1 cut(s) 1959
BcnI CCSGG 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 2038, 3114
BfaI CTAG 6 cut(s) 237, 939, 1326, 1641, 2108, 3124
BfmI CTRYAG 5 cut(s) 270, 742, 1985, 2364, 2770
BfoI RGCGCY 1 cut(s) 1153
BfuI GTATCC 2 cut(s) 2280, 2861
BglI GCCNNNNNGGC 1 cut(s) 1247
BisI GCNGC 9 cut(s) 362, 411, 470, 626, 1410, 1855, 2358, 2555, 2773
BlpI GCTNAGC 1 cut(s) 2124
BlsI GCNGC 9 cut(s) 363, 412, 471, 627, 1411, 1856, 2359, 2556, 2774
BmcAI AGTACT 1 cut(s) 1587
Bme1390I CCNGG 6 cut(s) 113, 204, 474, 490, 849, 3009
Bme18I GGWCC 2 cut(s) 481, 657
BmeT110I CYCGRG 3 cut(s) 1242, 1507, 1629
BmgT120I GGNCC 3 cut(s) 481, 657, 1276
BmiI GGNNCC 7 cut(s) 201, 382, 659, 846, 1080, 1347, 1680
BmrFI CCNGG 6 cut(s) 113, 204, 474, 490, 849, 3009
BmsI GCATC 9 cut(s) 556, 1296, 1396, 1512, 1891, 2005, 2080, 2344, 2462
BpiI GAAGAC 3 cut(s) 149, 1761, 2552
BpmI CTGGAG 1 cut(s) 2991
Bpu10I CCTNAGC 1 cut(s) 579
Bpu1102I GCTNAGC 1 cut(s) 2124
Bpu14I TTCGAA 1 cut(s) 140
BpuEI CTTGAG 2 cut(s) 1181, 1457
BpuMI CCSGG 1 cut(s) 490
Bsa29I ATCGAT 1 cut(s) 1597
BsaAI YACGTR 1 cut(s) 2872
BsaJI CCNNGG 8 cut(s) 203, 955, 1312, 1929, 2019, 2918, 3069, 3115
BsaWI WCCGGW 1 cut(s) 449
BsaXI ACNNNNNCTCC 2 cut(s) 3071, 3101
Bsc4I CCNNNNNNNGG 6 cut(s) 904, 1037, 1088, 2570, 2782, 3075
Bse1I ACTGG 8 cut(s) 382, 1099, 1502, 1798, 2180, 2337, 2389, 2976
Bse21I CCTNAGG 1 cut(s) 2064
BseBI CCWGG 5 cut(s) 113, 204, 474, 849, 3009
BseCI ATCGAT 1 cut(s) 1597
BseDI CCNNGG 8 cut(s) 203, 955, 1312, 1929, 2019, 2918, 3069, 3115
BseLI CCNNNNNNNGG 6 cut(s) 904, 1037, 1088, 2570, 2782, 3075
BseMII CTCAG 6 cut(s) 330, 570, 830, 2138, 2204, 2646
BseNI ACTGG 8 cut(s) 382, 1099, 1502, 1798, 2180, 2337, 2389, 2976
BseSI GKGCMC 1 cut(s) 2473
BseXI GCAGC 7 cut(s) 397, 456, 637, 1396, 2369, 2566, 2784
BseYI CCCAGC 1 cut(s) 1114
Bsh1236I CGCG 3 cut(s) 564, 663, 2949
BshFI GGCC 4 cut(s) 396, 932, 1278, 1741
BshNI GGYRCC 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 1597
BsiHKAI GWGCWC 3 cut(s) 614, 1636, 2473
BsiHKCI CYCGRG 3 cut(s) 1242, 1507, 1629
BsiSI CCGG 2 cut(s) 450, 489
BsiWI CGTACG 1 cut(s) 2340
BslFI GGGAC 2 cut(s) 220, 643
BslI CCNNNNNNNGG 6 cut(s) 904, 1037, 1088, 2570, 2782, 3075
BsmAI GTCTC 2 cut(s) 2038, 3114
BsmFI GGGAC 2 cut(s) 220, 643
BsmI GAATGC 1 cut(s) 1230
BsnI GGCC 4 cut(s) 396, 932, 1278, 1741
BsoBI CYCGRG 3 cut(s) 1242, 1507, 1629
Bsp119I TTCGAA 1 cut(s) 140
Bsp1286I GDGCHC 3 cut(s) 614, 1636, 2473
Bsp1407I TGTACA 1 cut(s) 976
Bsp1720I GCTNAGC 1 cut(s) 2124
Bsp68I TCGCGA 1 cut(s) 564
BspANI GGCC 4 cut(s) 396, 932, 1278, 1741
BspCNI CTCAG 6 cut(s) 329, 571, 831, 2137, 2205, 2647
BspDI ATCGAT 1 cut(s) 1597
BspFNI CGCG 3 cut(s) 564, 663, 2949
BspHI TCATGA 1 cut(s) 2713
BspLI GGNNCC 7 cut(s) 201, 382, 659, 846, 1080, 1347, 1680
BspMAI CTGCAG 2 cut(s) 2368, 2774
BspQI GCTCTTC 1 cut(s) 3
BspT104I TTCGAA 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 976
BsrI ACTGG 8 cut(s) 382, 1099, 1502, 1798, 2180, 2337, 2389, 2976
BssECI CCNNGG 8 cut(s) 203, 955, 1312, 1929, 2019, 2918, 3069, 3115
BssSI CACGAG 1 cut(s) 1073
BssT1I CCWWGG 7 cut(s) 955, 1312, 1929, 2019, 2918, 3069, 3115
Bst2BI CACGAG 1 cut(s) 1073
Bst2UI CCWGG 5 cut(s) 113, 204, 474, 849, 3009
Bst4CI ACNGT 8 cut(s) 1518, 1532, 2251, 2323, 2511, 2550, 2821, 2884
Bst6I CTCTTC 3 cut(s) 3, 1617, 1721
BstAPI GCANNNNNTGC 2 cut(s) 2363, 2372
BstAUI TGTACA 1 cut(s) 976
BstBAI YACGTR 1 cut(s) 2872
BstBI TTCGAA 1 cut(s) 140
BstC8I GCNNGC 3 cut(s) 1398, 1739, 2373
BstDEI CTNAG 7 cut(s) 316, 579, 839, 2064, 2124, 2213, 2655
BstEII GGTNACC 1 cut(s) 1526
BstFNI CGCG 3 cut(s) 564, 663, 2949
BstH2I RGCGCY 1 cut(s) 1153
BstHHI GCGC 4 cut(s) 403, 1152, 1311, 2087
BstMAI GTCTC 2 cut(s) 2038, 3114
BstNI CCWGG 5 cut(s) 113, 204, 474, 849, 3009
BstNSI RCATGY 3 cut(s) 129, 1022, 2375
BstPI GGTNACC 1 cut(s) 1526
BstSCI CCNGG 6 cut(s) 111, 202, 472, 488, 847, 3007
BstSFI CTRYAG 5 cut(s) 270, 742, 1985, 2364, 2770
BstSLI GKGCMC 1 cut(s) 2473
BstUI CGCG 3 cut(s) 564, 663, 2949
BstV1I GCAGC 7 cut(s) 397, 456, 637, 1396, 2369, 2566, 2784
BstV2I GAAGAC 3 cut(s) 149, 1761, 2552
BstX2I RGATCY 3 cut(s) 199, 1078, 1678
BstXI CCANNNNNNTGG 1 cut(s) 943
BstYI RGATCY 3 cut(s) 199, 1078, 1678
Bsu15I ATCGAT 1 cut(s) 1597
Bsu36I CCTNAGG 1 cut(s) 2064
BsuI GTATCC 2 cut(s) 2280, 2861
BsuRI GGCC 4 cut(s) 396, 932, 1278, 1741
BsuTUI ATCGAT 1 cut(s) 1597
BtgZI GCGATG 2 cut(s) 579, 1872
BtsI GCAGTG 5 cut(s) 1257, 1387, 2118, 2361, 2373
BtsIMutI CAGTG 7 cut(s) 1257, 1387, 2118, 2330, 2361, 2373, 2969
BtuMI TCGCGA 1 cut(s) 564
Cac8I GCNNGC 3 cut(s) 1398, 1739, 2373
CaiI CAGNNNCTG 3 cut(s) 1256, 2363, 2936
CciI TCATGA 1 cut(s) 2713
CfoI GCGC 4 cut(s) 403, 1152, 1311, 2087
Cfr13I GGNCC 3 cut(s) 481, 657, 1276
ClaI ATCGAT 1 cut(s) 1597
CseI GACGC 1 cut(s) 2546
Csp6I GTAC 9 cut(s) 256, 381, 977, 1092, 1586, 1862, 2297, 2341, 2386
CspCI CAANNNNNGTGG 6 cut(s) 681, 716, 1363, 1398, 1502, 1537
CviQI GTAC 9 cut(s) 256, 381, 977, 1092, 1586, 1862, 2297, 2341, 2386
DdeI CTNAG 7 cut(s) 316, 579, 839, 2064, 2124, 2213, 2655
DraI TTTAAA 1 cut(s) 1285
DrdI GACNNNNNNGTC 1 cut(s) 1139
DseDI GACNNNNNNGTC 1 cut(s) 1139
EaeI YGGCCR 2 cut(s) 930, 1739
Eam1104I CTCTTC 3 cut(s) 3, 1617, 1721
EarI CTCTTC 3 cut(s) 3, 1617, 1721
EciI GGCGGA 3 cut(s) 454, 1586, 2229
Eco130I CCWWGG 7 cut(s) 955, 1312, 1929, 2019, 2918, 3069, 3115
Eco32I GATATC 2 cut(s) 1804, 2149
Eco47I GGWCC 2 cut(s) 481, 657
Eco57I CTGAAG 4 cut(s) 86, 1278, 2553, 3047
Eco81I CCTNAGG 1 cut(s) 2064
Eco88I CYCGRG 3 cut(s) 1242, 1507, 1629
Eco91I GGTNACC 1 cut(s) 1526
EcoO109I RGGNCCY 1 cut(s) 1276
EcoO65I GGTNACC 1 cut(s) 1526
EcoRI GAATTC 1 cut(s) 1047
EcoRII CCWGG 5 cut(s) 111, 202, 472, 847, 3007
EcoRV GATATC 2 cut(s) 1804, 2149
EcoT14I CCWWGG 7 cut(s) 955, 1312, 1929, 2019, 2918, 3069, 3115
EcoT22I ATGCAT 1 cut(s) 571
ErhI CCWWGG 7 cut(s) 955, 1312, 1929, 2019, 2918, 3069, 3115
FalI AAGNNNNNCTT 6 cut(s) 1265, 1297, 2042, 2074, 2411, 2443
FaqI GGGAC 2 cut(s) 220, 643
FauI CCCGC 2 cut(s) 668, 1546
FbaI TGATCA 1 cut(s) 1959
FblI GTMKAC 2 cut(s) 1984, 2879
Fnu4HI GCNGC 9 cut(s) 362, 411, 470, 626, 1410, 1855, 2358, 2555, 2773
Fsp4HI GCNGC 9 cut(s) 362, 411, 470, 626, 1410, 1855, 2358, 2555, 2773
FspBI CTAG 6 cut(s) 237, 939, 1326, 1641, 2108, 3124
GlaI GCGC 4 cut(s) 402, 1151, 1310, 2086
GluI GCNGC 9 cut(s) 362, 411, 470, 626, 1410, 1855, 2358, 2555, 2773
GsaI CCCAGC 1 cut(s) 1118
GsuI CTGGAG 1 cut(s) 2991
HaeII RGCGCY 1 cut(s) 1153
HaeIII GGCC 4 cut(s) 396, 932, 1278, 1741
HapII CCGG 2 cut(s) 450, 489
HgaI GACGC 1 cut(s) 2546
HhaI GCGC 4 cut(s) 403, 1152, 1311, 2087
Hin6I GCGC 4 cut(s) 401, 1150, 1309, 2085
HinP1I GCGC 4 cut(s) 401, 1150, 1309, 2085
HincII GTYRAC 1 cut(s) 882
HindII GTYRAC 1 cut(s) 882
HindIII AAGCTT 6 cut(s) 78, 98, 521, 1433, 1994, 3059
HpaI GTTAAC 1 cut(s) 882
HpaII CCGG 2 cut(s) 450, 489
HphI GGTGA 4 cut(s) 397, 929, 971, 1520
Hpy166II GTNNAC 5 cut(s) 882, 1985, 2471, 2696, 2880
Hpy8I GTNNAC 5 cut(s) 882, 1985, 2471, 2696, 2880
Hpy99I CGWCG 1 cut(s) 636
HpyAV CCTTC 9 cut(s) 40, 52, 259, 395, 1016, 1181, 1267, 1973, 2036
HpyCH4III ACNGT 8 cut(s) 1518, 1532, 2251, 2323, 2511, 2550, 2821, 2884
HpyCH4IV ACGT 5 cut(s) 631, 1231, 2591, 2871, 2913
HpyF3I CTNAG 7 cut(s) 316, 579, 839, 2064, 2124, 2213, 2655
HpySE526I ACGT 5 cut(s) 631, 1231, 2591, 2871, 2913
HspAI GCGC 4 cut(s) 401, 1150, 1309, 2085
KpnI GGTACC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 1959
KspAI GTTAAC 1 cut(s) 882
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 4 cut(s) 115, 338, 609, 641
Lsp1109I GCAGC 7 cut(s) 397, 456, 637, 1396, 2369, 2566, 2784
LweI GCATC 9 cut(s) 556, 1296, 1396, 1512, 1891, 2005, 2080, 2344, 2462
MaeI CTAG 6 cut(s) 237, 939, 1326, 1641, 2108, 3124
MaeII ACGT 5 cut(s) 631, 1231, 2591, 2871, 2913
MaeIII GTNAC 9 cut(s) 373, 452, 1252, 1493, 1526, 1796, 2328, 2435, 2536
MfeI CAATTG 2 cut(s) 763, 1667
MflI RGATCY 3 cut(s) 199, 1078, 1678
MhlI GDGCHC 3 cut(s) 614, 1636, 2473
MlsI TGGCCA 2 cut(s) 932, 1741
MluNI TGGCCA 2 cut(s) 932, 1741
MlyI GAGTC 3 cut(s) 202, 2681, 2958
MmeI TCCRAC 1 cut(s) 1799
Mox20I TGGCCA 2 cut(s) 932, 1741
Mph1103I ATGCAT 1 cut(s) 571
MroXI GAANNNNTTC 2 cut(s) 1488, 2749
MscI TGGCCA 2 cut(s) 932, 1741
MseI TTAA 6 cut(s) 599, 881, 1137, 1170, 1284, 1356
MslI CAYNNNNRTG 5 cut(s) 803, 941, 984, 1008, 2366
Msp20I TGGCCA 2 cut(s) 932, 1741
MspA1I CMGCKG 2 cut(s) 320, 410
MspI CCGG 2 cut(s) 450, 489
MspR9I CCNGG 6 cut(s) 113, 204, 474, 490, 849, 3009
MunI CAATTG 2 cut(s) 763, 1667
Mva1269I GAATGC 1 cut(s) 1230
MvaI CCWGG 5 cut(s) 113, 204, 474, 849, 3009
MvnI CGCG 3 cut(s) 564, 663, 2949
NciI CCSGG 1 cut(s) 490
NlaIV GGNNCC 7 cut(s) 201, 382, 659, 846, 1080, 1347, 1680
NmuCI GTSAC 6 cut(s) 1252, 1493, 1526, 1796, 2328, 2536
NruI TCGCGA 1 cut(s) 564
NsiI ATGCAT 1 cut(s) 571
NspI RCATGY 3 cut(s) 129, 1022, 2375
NspV TTCGAA 1 cut(s) 140
OliI CACNNNNGTG 2 cut(s) 941, 2366
PaeI GCATGC 1 cut(s) 2375
PaeR7I CTCGAG 2 cut(s) 1507, 1629
PagI TCATGA 1 cut(s) 2713
PciSI GCTCTTC 1 cut(s) 3
PcsI WCGNNNNNNNCGW 1 cut(s) 1410
PctI GAATGC 1 cut(s) 1230
PdmI GAANNNNTTC 2 cut(s) 1488, 2749
PfeI GAWTC 7 cut(s) 323, 1672, 1894, 2336, 2651, 2858, 3037
Pfl23II CGTACG 1 cut(s) 2340
PfoI TCCNGGA 2 cut(s) 111, 847
PkrI GCNGC 9 cut(s) 363, 412, 471, 627, 1411, 1856, 2359, 2556, 2774
PleI GAGTC 3 cut(s) 202, 2680, 2958
PpsI GAGTC 3 cut(s) 202, 2680, 2958
Ppu21I YACGTR 1 cut(s) 2872
Psp1406I AACGTT 1 cut(s) 2913
Psp6I CCWGG 5 cut(s) 111, 202, 472, 847, 3007
PspEI GGTNACC 1 cut(s) 1526
PspFI CCCAGC 1 cut(s) 1114
PspGI CCWGG 5 cut(s) 111, 202, 472, 847, 3007
PspLI CGTACG 1 cut(s) 2340
PspN4I GGNNCC 7 cut(s) 201, 382, 659, 846, 1080, 1347, 1680
PspPI GGNCC 3 cut(s) 481, 657, 1276
PspXI VCTCGAGB 1 cut(s) 1629
PstI CTGCAG 2 cut(s) 2368, 2774
PstNI CAGNNNCTG 3 cut(s) 1256, 2363, 2936
PsuI RGATCY 3 cut(s) 199, 1078, 1678
RruI TCGCGA 1 cut(s) 564
RsaI GTAC 9 cut(s) 257, 382, 978, 1093, 1587, 1863, 2298, 2342, 2387
RsaNI GTAC 9 cut(s) 256, 381, 977, 1092, 1586, 1862, 2297, 2341, 2386
RseI CAYNNNNRTG 5 cut(s) 803, 941, 984, 1008, 2366
SapI GCTCTTC 1 cut(s) 3
SaqAI TTAA 6 cut(s) 599, 881, 1137, 1170, 1284, 1356
SatI GCNGC 9 cut(s) 362, 411, 470, 626, 1410, 1855, 2358, 2555, 2773
Sau96I GGNCC 3 cut(s) 481, 657, 1276
ScaI AGTACT 1 cut(s) 1587
SchI GAGTC 3 cut(s) 202, 2681, 2958
ScrFI CCNGG 6 cut(s) 113, 204, 474, 490, 849, 3009
SduI GDGCHC 3 cut(s) 614, 1636, 2473
SfaNI GCATC 9 cut(s) 556, 1296, 1396, 1512, 1891, 2005, 2080, 2344, 2462
SfcI CTRYAG 5 cut(s) 270, 742, 1985, 2364, 2770
Sfr274I CTCGAG 2 cut(s) 1507, 1629
SfuI TTCGAA 1 cut(s) 140
SinI GGWCC 2 cut(s) 481, 657
SlaI CTCGAG 2 cut(s) 1507, 1629
SmiMI CAYNNNNRTG 5 cut(s) 803, 941, 984, 1008, 2366
SmlI CTYRAG 4 cut(s) 1160, 1436, 1507, 1629
SmoI CTYRAG 4 cut(s) 1160, 1436, 1507, 1629
SphI GCATGC 1 cut(s) 2375
SspMI CTAG 6 cut(s) 237, 939, 1326, 1641, 2108, 3124
StyD4I CCNGG 6 cut(s) 111, 202, 472, 488, 847, 3007
StyI CCWWGG 7 cut(s) 955, 1312, 1929, 2019, 2918, 3069, 3115
TaaI ACNGT 8 cut(s) 1518, 1532, 2251, 2323, 2511, 2550, 2821, 2884
TaiI ACGT 5 cut(s) 634, 1234, 2594, 2874, 2916
TaqI TCGA 6 cut(s) 140, 823, 1404, 1508, 1597, 1630
TatI WGTACW 2 cut(s) 976, 1585
TauI GCSGC 2 cut(s) 364, 1857
TfiI GAWTC 7 cut(s) 323, 1672, 1894, 2336, 2651, 2858, 3037
Tru1I TTAA 6 cut(s) 599, 881, 1137, 1170, 1284, 1356
Tru9I TTAA 6 cut(s) 599, 881, 1137, 1170, 1284, 1356
TscAI CASTG 7 cut(s) 1257, 1387, 2125, 2337, 2368, 2373, 2976
TseFI GTSAC 6 cut(s) 1252, 1493, 1526, 1796, 2328, 2536
TseI GCWGC 7 cut(s) 410, 469, 625, 1409, 2357, 2554, 2772
Tsp45I GTSAC 6 cut(s) 1252, 1493, 1526, 1796, 2328, 2536
TspGWI ACGGA 2 cut(s) 2511, 2681
TspRI CASTG 7 cut(s) 1257, 1387, 2125, 2337, 2368, 2373, 2976
VneI GTGCAC 1 cut(s) 2469
VpaK11BI GGWCC 2 cut(s) 481, 657
XapI RAATTY 7 cut(s) 16, 869, 1047, 1068, 1214, 2008, 3001
XbaI TCTAGA 1 cut(s) 1325
XceI RCATGY 3 cut(s) 129, 1022, 2375
XcmI CCANNNNNNNNNTGG 2 cut(s) 940, 1034
XhoI CTCGAG 2 cut(s) 1507, 1629
XmiI GTMKAC 2 cut(s) 1984, 2879
XmnI GAANNNNTTC 2 cut(s) 1488, 2749
XspI CTAG 6 cut(s) 237, 939, 1326, 1641, 2108, 3124
ZrmI AGTACT 1 cut(s) 1587
Zsp2I ATGCAT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.