Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000332

Physical Location & Seq

Genomic Coordinates Reverse (-)

12967951 .. 12974988

Gene Structure 7038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGATGAGAAAAGTTCAAAGGCCGTTGCAGAAGCTTTTGTTAGGCTACATAATCAAGGACTCATCTACAGGGATAATCGCATAGTGAACTGGGATTATTTAGGTGAGATAGTTGTAGCCACTGCCCGAATAGAGATGATGCTTGGTGATACCGCTATTGCAATGCATCGTGATGTCGAAACATATAAGCATGTTCATGGAAAACATGCAATCCTTCCATTTAATGGAAGAAGGATTCCTATAATAAGTGATGAAATTCTTGTTGATCCGAGTTTGGGATTGGCGCTGTCAAGCAAGGAAGAGGTCTTTACTTACAGCGAGGTCAAGAACGGTGTCGTCGAGGAACGCGAGCCGCCGATACGAAACAGCGTCACTTATGCGGCGAAGGGGTGGATGAGAGCTTCTGTTGAGCCATCGTGCCCTCTCGGGAGAGAAGGGGTGATCTCGAACAGACGAGTTGCAACGAATACAAGAGAAGGCAAAGACGACGCTGAAACCGATCCGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

169

Amino Acids

18.92

Weight (kDa)

5.76

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	1 - 44	8e-07	tRNA synthetases class I (I, L, M and V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14610 AT1G27160
fragaria_vesca	FvH4_5g33250 FvH4_7g01700 FvH4_7g28940 FvH4_7g28940 FvH4_7g28940
malus_domestica	MD01G1196000.v1.1 MD03G1000400.v1.1 MD06G1107900.v1.1 MD07G1262800.v1.1 MD15G1255900.v1.1 MD15G1433500.v1.1 MD17G1256800.v1.1
prunus_persica	Prupe.1G576900_v2.0.a1 Prupe.1G576900_v2.0.a1 Prupe.2G289400_v2.0.a1 Prupe.2G289400_v2.0.a1
pyrus_communis	pycom01g20660 pycom03g00060 pycom07g24190 pycom15g38270 pycom17g25900
rosa_chinensis	RchiOBHm_Chr1g0376611 RchiOBHm_Chr2g0151751 RchiOBHm_Chr2g0151761 RchiOBHm_Chr5g0049821 RchiOBHm_Chr5g0066661 RchiOBHm_Chr7g0182401 RchiOBHm_Chr7g0218391 RchiOBHm_Chr7g0218401 RchiOBHm_Chr7g0218411 RchiOBHm_Chr7g0232241 RchiOBHm_Chr7g0232251 RchiOBHm_Chr7g0232281 RchiOBHm_Chr7g0232291 RchiOBHm_Chr7g0232301
rosa_laevigata	RLG00000001360 RLG00000001362 RLG00000001368 RLG00000005125 RLG00000005126 RLG00000026593
rosa_multiflora	Rmu_co8187388.1_g000001 Rmu_co8244885.1_g000001 Rmu_co8371739.1_g000001 Rmu_co8421977.1_g000001 Rmu_co8457289.1_g000001 Rmu_sc0000239.1_g000041 Rmu_sc0000927.1_g000001 Rmu_sc0000945.1_g000003 Rmu_sc0002042.1_g000017 Rmu_sc0004136.1_g000003 Rmu_sc0005294.1_g000036 Rmu_sc0017871.1_g000001 Rmu_sc0029500.1_g000001 Rmu_sc0037577.1_g000001 Rmu_sc0037577.1_g000002 Rmu_ssc0000034.1_g000001 Rmu_ssc0000115.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112130 Rroxscaffold_3G00228490 Rroxscaffold_3G00228520 Rroxscaffold_3G00228530 Rroxscaffold_3G00228620 Rroxscaffold_3G00228650 Rroxscaffold_4G00281940
rosa_rugosa	Rorug01G0396800 Rorug01G0396800 Rorug06G0073800 Rorug06G0073900 Rorug06G0447200 Rorug06G0447200 Rorug06G0447300 Rorug06G0447400 Rorug07G0270800 Rorug07G0271800 Rorug07G0271900 Rorug07G0272000 Rorug07G0272200 Rorug07G0272300
rosa_samantha	Rh1AG413400 Rh1BG373100 Rh1CG021500 Rh1CG151000 Rh1CG387000 Rh1DG404000 Rh2BG502300 Rh2DG513300 Rh3AG126000 Rh4AG156700 Rh7AG050700 Rh7AG050800 Rh7AG425000 Rh7AG425500 Rh7AG426200 Rh7BG050400 Rh7BG399800 Rh7BG399900 Rh7BG400000 Rh7CG052000 Rh7CG445400 Rh7CG445600 Rh7CG445900 Rh7CG446000 Rh7DG417300
rosa_wichuraiana	Rw0G007060 Rw1G036250 Rw1G036280 Rw7G027040 Rw7G035320 Rw7G035350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	224
AccII	CGCG	1 cut(s)	348
AciI	CCGC	3 cut(s)	153, 353, 380
AclWI	GGATC	2 cut(s)	260, 494
AcsI	RAATTY	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	224, 275
AgsI	TTSAA	1 cut(s)	18
AluBI	AGCT	2 cut(s)	35, 401
AluI	AGCT	2 cut(s)	35, 401
AlwI	GGATC	2 cut(s)	260, 494
Ama87I	CYCGRG	1 cut(s)	425
AoxI	GGCC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	286
AsuHPI	GGTGA	3 cut(s)	116, 158, 451
AvaI	CYCGRG	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	422
BccI	CCATC	1 cut(s)	421
BceAI	ACGGC	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	67
BfoI	RGCGCY	1 cut(s)	287
BisI	GCNGC	2 cut(s)	353, 381
BlsI	GCNGC	2 cut(s)	354, 382
BmeT110I	CYCGRG	1 cut(s)	425
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	2 cut(s)	129, 175
BmuI	ACTGGG	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 275
Bse1I	ACTGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	10, 399
BseLI	CCNNNNNNNGG	2 cut(s)	224, 275
BseMI	GCAATG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	224, 275
BsnI	GGCC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	3 cut(s)	265, 441, 499
BspACI	CCGC	3 cut(s)	153, 353, 380
BspANI	GGCC	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	348
BspPI	GGATC	2 cut(s)	260, 494
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	95
BssMI	GATC	3 cut(s)	265, 441, 499
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	10, 399
BstFNI	CGCG	1 cut(s)	348
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	3 cut(s)	268, 444, 502
BstMBI	GATC	3 cut(s)	265, 441, 499
BstNSI	RCATGY	2 cut(s)	194, 209
BstSFI	CTRYAG	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	422
BstUI	CGCG	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	10, 399
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	350
CfoI	GCGC	1 cut(s)	286
CseI	GACGC	2 cut(s)	358, 497
CviAII	CATG	3 cut(s)	191, 197, 206
CviJI	RGCY	7 cut(s)	23, 35, 46, 119, 352, 401, 412
CviKI_1	RGCY	7 cut(s)	23, 35, 46, 119, 352, 401, 412
DpnI	GATC	3 cut(s)	267, 443, 501
DpnII	GATC	3 cut(s)	265, 441, 499
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	425
EcoT22I	ATGCAT	1 cut(s)	168
FaeI	CATG	3 cut(s)	194, 200, 209
FaiI	YATR	9 cut(s)	51, 83, 184, 186, 192, 198, 207, 242, 378
FatI	CATG	3 cut(s)	190, 196, 205
Fnu4HI	GCNGC	2 cut(s)	353, 381
FokI	GGATG	2 cut(s)	17, 406
Fsp4HI	GCNGC	2 cut(s)	353, 381
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	2 cut(s)	353, 381
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	23
HgaI	GACGC	2 cut(s)	358, 497
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	3 cut(s)	194, 200, 209
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HindIII	AAGCTT	1 cut(s)	33
HinfI	GANTC	2 cut(s)	60, 235
HphI	GGTGA	3 cut(s)	116, 158, 451
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	270, 504
Hpy188III	TCNNGA	4 cut(s)	170, 325, 427, 445
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	2 cut(s)	341, 491
HpyAV	CCTTC	5 cut(s)	224, 225, 379, 428, 470
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	5 cut(s)	29, 161, 166, 209, 461
Hsp92II	CATG	3 cut(s)	194, 200, 209
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	3 cut(s)	265, 441, 499
LpnPI	CCDG	2 cut(s)	55, 76
LweI	GCATC	2 cut(s)	129, 175
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	3 cut(s)	267, 443, 501
MboI	GATC	3 cut(s)	265, 441, 499
MboII	GAAGA	2 cut(s)	240, 311
MhlI	GDGCHC	1 cut(s)	422
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	4 cut(s)	295, 313, 334, 432
Mph1103I	ATGCAT	1 cut(s)	168
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	2 cut(s)	171, 195
MvnI	CGCG	1 cut(s)	348
NdeII	GATC	3 cut(s)	265, 441, 499
NlaIII	CATG	3 cut(s)	194, 200, 209
NmuCI	GTSAC	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	168
NspI	RCATGY	2 cut(s)	194, 209
PcsI	WCGNNNNNNNCGW	3 cut(s)	336, 345, 495
PfeI	GAWTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	354, 382
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
RseI	CAYNNNNRTG	2 cut(s)	171, 195
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	353, 381
Sau3AI	GATC	3 cut(s)	265, 441, 499
SchI	GAGTC	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	422
SetI	ASST	5 cut(s)	37, 106, 306, 324, 403
SfaNI	GCATC	2 cut(s)	129, 175
SfcI	CTRYAG	1 cut(s)	67
SmiMI	CAYNNNNRTG	2 cut(s)	171, 195
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	3 cut(s)	153, 353, 380
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	3 cut(s)	177, 339, 446
TasI	AATT	1 cut(s)	255
TauI	GCSGC	2 cut(s)	355, 383
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	185, 267
TspRI	CASTG	1 cut(s)	127
Van91I	CCANNNNNTGG	1 cut(s)	224
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	2 cut(s)	194, 209
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.