Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000170.1

Orthogroup ID

OG0011684

Physical Location & Seq

Genomic Coordinates Reverse (-)

59825 .. 63791

Gene Structure 3967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atgaacaatgatttagaatcggatgcgaattcagaatccggtgatgacattaaggaagctaaagctaaggacgggagcatcagtgaggatgaagctatggtttcgccaatggttctacggcctcttcttcccaaaccccaacttctctcccaaccctcacaaacccagaccgcccgatcccaaatcataaataatatccagaaccaaaccagagtcacggcgatggaggagcaacaggagcacgaggtctacggcggcgagattcccaacgacgacggcgaagatgtcgacatgtcgtcccgcgccgacgacgaccaggactacaacgacgaccctaactccaaggagctggaggacatgaagaagaggctgaaggagattgaggaagaggccggcgcgctccgcgatatgcaggctaaggtcgagaaggagatgggagctgttcaagatcccaatggcggttctgcaagtcaggcagaaaaggaggaggtggatgctcgatccatctatgttggcaacgtcgactatgcatgcactcctgaagaagtccagcagcattttcaatcttgtggaactgtgaacagagttacgattttgacagacaagtttggtcaaccaaaaggatttgcttacgttgagtttgttgaagttgatgctgtgcagaatgctctcatactaaatgaatcagaattgcatggtcgtcaattgaaggtctctgctaaacggacaaacgttcctggactgaaacagtatcgaggaaggcgtcctaacccatttttccgatctaggaggcccttcatggctgctgcgcctttctacccctcgtatggttatggtatcgaggaaggcgtcctaacccatttttcagatctaggaggcccttcatggctgctgcgcctttctacccctcgtatggttatgggagggttccaaggttcagacggcccatgcgttacagaccatactaatgatgacacctccaggtggccacattttgagaaggccgtttatgtttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008143 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990251 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

339

Amino Acids

37.79

Weight (kDa)

4.66

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	169 - 237	4.2e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51120 AT5G51120 AT5G51120
fragaria_vesca	FvH4_7g26520 FvH4_7g26520
malus_domestica	MD01G1174000.v1.1 MD07G1240900.v1.1
prunus_persica	Prupe.2G269600_v2.0.a1
pyrus_communis	pycom01g18580
rosa_chinensis	RchiOBHm_Chr1g0373171
rosa_laevigata	RLG00000026846
rosa_multiflora	Rmu_sc0000170.1_g000015
rosa_roxburghii	Rroxscaffold_4G00284410
rosa_rugosa	Rorug01G0376500
rosa_samantha	Rh1AG384900 Rh1BG348800 Rh1CG362300 Rh1DG379800
rosa_wichuraiana	Rw1G033950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	249, 288, 522
AccII	CGCG	3 cut(s)	303, 398, 405
AciI	CCGC	5 cut(s)	171, 255, 301, 403, 459
AclI	AACGTT	1 cut(s)	732
AclWI	GGATC	3 cut(s)	171, 443, 495
AcoI	YGGCCR	1 cut(s)	986
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	2 cut(s)	392, 561
AcyI	GRCGYC	2 cut(s)	763, 849
AfiI	CCNNNNNNNGG	4 cut(s)	458, 827, 913, 984
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	4 cut(s)	446, 563, 647, 709
AhdI	GACNNNNNGTC	1 cut(s)	295
AjnI	CCWGG	3 cut(s)	315, 736, 980
AluBI	AGCT	5 cut(s)	59, 65, 95, 349, 440
AluI	AGCT	5 cut(s)	59, 65, 95, 349, 440
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	718
AlwI	GGATC	3 cut(s)	171, 443, 495
AoxI	GGCC	7 cut(s)	119, 390, 791, 877, 943, 986, 1002
ApeKI	GCWGC	5 cut(s)	553, 803, 806, 889, 892
ApoI	RAATTY	1 cut(s)	28
AspLEI	GCGC	5 cut(s)	305, 398, 400, 811, 897
AspS9I	GGNCC	3 cut(s)	792, 878, 944
AsuHPI	GGTGA	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	988
BauI	CACGAG	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	5 cut(s)	565, 790, 793, 876, 879
BccI	CCATC	3 cut(s)	217, 427, 512
BceAI	ACGGC	6 cut(s)	134, 234, 268, 292, 958, 989
BciT130I	CCWGG	3 cut(s)	317, 738, 982
BcoDI	GTCTC	1 cut(s)	718
BfaI	CTAG	2 cut(s)	786, 872
BglII	AGATCT	1 cut(s)	868
BisI	GCNGC	6 cut(s)	256, 554, 804, 807, 890, 893
BlsI	GCNGC	6 cut(s)	257, 555, 805, 808, 891, 894
Bme1390I	CCNGG	3 cut(s)	317, 738, 982
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmgT120I	GGNCC	3 cut(s)	792, 878, 944
BmiI	GGNNCC	1 cut(s)	929
BmrFI	CCNGG	3 cut(s)	317, 738, 982
BmsI	GCATC	4 cut(s)	13, 87, 484, 643
BpmI	CTGGAG	2 cut(s)	371, 964
Bpu10I	CCTNAGC	2 cut(s)	66, 417
BsaHI	GRCGYC	2 cut(s)	763, 849
BsaI	GGTCTC	1 cut(s)	718
BsaJI	CCNNGG	2 cut(s)	342, 931
BsaWI	WCCGGW	1 cut(s)	38
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 323, 353
Bsc4I	CCNNNNNNNGG	4 cut(s)	458, 827, 913, 984
Bse118I	RCCGGY	1 cut(s)	392
BseBI	CCWGG	3 cut(s)	317, 738, 982
BseDI	CCNNGG	2 cut(s)	342, 931
BseGI	GGATG	3 cut(s)	28, 94, 499
BseLI	CCNNNNNNNGG	4 cut(s)	458, 827, 913, 984
BsePI	GCGCGC	1 cut(s)	396
BseRI	GAGGAG	2 cut(s)	242, 500
BseXI	GCAGC	5 cut(s)	565, 790, 793, 876, 879
BsgI	GTGCAG	1 cut(s)	680
Bsh1236I	CGCG	3 cut(s)	303, 398, 405
BshFI	GGCC	7 cut(s)	121, 392, 793, 879, 945, 988, 1004
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	2 cut(s)	39, 393
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	4 cut(s)	458, 827, 913, 984
BsmAI	GTCTC	1 cut(s)	718
BsmFI	GGGAC	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	670
BsnI	GGCC	7 cut(s)	121, 392, 793, 879, 945, 988, 1004
Bso31I	GGTCTC	1 cut(s)	718
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	5 cut(s)	176, 448, 500, 782, 868
BspACI	CCGC	5 cut(s)	171, 255, 301, 403, 459
BspANI	GGCC	7 cut(s)	121, 392, 793, 879, 945, 988, 1004
BspFNI	CGCG	3 cut(s)	303, 398, 405
BspHI	TCATGA	1 cut(s)	1016
BspLI	GGNNCC	1 cut(s)	929
BspPI	GGATC	3 cut(s)	171, 443, 495
BspTNI	GGTCTC	1 cut(s)	718
BsrFI	RCCGGY	1 cut(s)	392
BssAI	RCCGGY	1 cut(s)	392
BssECI	CCNNGG	2 cut(s)	342, 931
BssHII	GCGCGC	1 cut(s)	396
BssMI	GATC	5 cut(s)	176, 448, 500, 782, 868
BssNI	GRCGYC	2 cut(s)	763, 849
BssSI	CACGAG	1 cut(s)	242
BssT1I	CCWWGG	2 cut(s)	342, 931
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	3 cut(s)	317, 738, 982
Bst4CI	ACNGT	2 cut(s)	577, 750
Bst6I	CTCTTC	3 cut(s)	129, 359, 381
BstACI	GRCGYC	2 cut(s)	763, 849
BstC8I	GCNNGC	4 cut(s)	394, 398, 414, 532
BstDEI	CTNAG	2 cut(s)	66, 417
BstF5I	GGATG	3 cut(s)	28, 94, 499
BstFNI	CGCG	3 cut(s)	303, 398, 405
BstHHI	GCGC	5 cut(s)	305, 398, 400, 811, 897
BstKTI	GATC	5 cut(s)	179, 451, 503, 785, 871
BstMAI	GTCTC	1 cut(s)	718
BstMBI	GATC	5 cut(s)	176, 448, 500, 782, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 402, 473
BstNI	CCWGG	3 cut(s)	317, 738, 982
BstNSI	RCATGY	2 cut(s)	295, 534
BstSCI	CCNGG	3 cut(s)	315, 736, 980
BstUI	CGCG	3 cut(s)	303, 398, 405
BstV1I	GCAGC	5 cut(s)	565, 790, 793, 876, 879
BstX2I	RGATCY	2 cut(s)	448, 868
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstYI	RGATCY	2 cut(s)	448, 868
BsuRI	GGCC	7 cut(s)	121, 392, 793, 879, 945, 988, 1004
BtgZI	GCGATG	1 cut(s)	236
BtsCI	GGATG	3 cut(s)	28, 94, 499
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	4 cut(s)	394, 398, 414, 532
CciI	TCATGA	1 cut(s)	1016
CfoI	GCGC	5 cut(s)	305, 398, 400, 811, 897
Cfr10I	RCCGGY	1 cut(s)	392
Cfr13I	GGNCC	3 cut(s)	792, 878, 944
CseI	GACGC	2 cut(s)	752, 838
CviAII	CATG	8 cut(s)	292, 358, 531, 695, 799, 885, 948, 1017
DdeI	CTNAG	2 cut(s)	66, 417
DpnI	GATC	5 cut(s)	178, 450, 502, 784, 870
DpnII	GATC	5 cut(s)	176, 448, 500, 782, 868
DriI	GACNNNNNGTC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	986
Eam1104I	CTCTTC	3 cut(s)	129, 359, 381
Eam1105I	GACNNNNNGTC	1 cut(s)	295
EarI	CTCTTC	3 cut(s)	129, 359, 381
Eco130I	CCWWGG	2 cut(s)	342, 931
Eco31I	GGTCTC	1 cut(s)	718
Eco57I	CTGAAG	2 cut(s)	392, 561
EcoO109I	RGGNCCY	2 cut(s)	792, 878
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	3 cut(s)	315, 736, 980
EcoT14I	CCWWGG	2 cut(s)	342, 931
EcoT22I	ATGCAT	1 cut(s)	532
ErhI	CCWWGG	2 cut(s)	342, 931
FaeI	CATG	8 cut(s)	295, 361, 534, 698, 802, 888, 951, 1020
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	8 cut(s)	291, 357, 530, 694, 798, 884, 947, 1016
FauI	CCCGC	1 cut(s)	308
FblI	GTMKAC	3 cut(s)	249, 288, 522
Fnu4HI	GCNGC	6 cut(s)	256, 554, 804, 807, 890, 893
FokI	GGATG	3 cut(s)	35, 101, 506
Fsp4HI	GCNGC	6 cut(s)	256, 554, 804, 807, 890, 893
FspBI	CTAG	2 cut(s)	786, 872
GlaI	GCGC	5 cut(s)	304, 397, 399, 810, 896
GluI	GCNGC	6 cut(s)	256, 554, 804, 807, 890, 893
GsuI	CTGGAG	2 cut(s)	371, 964
HaeIII	GGCC	7 cut(s)	121, 392, 793, 879, 945, 988, 1004
HapII	CCGG	2 cut(s)	39, 393
HgaI	GACGC	2 cut(s)	752, 838
HhaI	GCGC	5 cut(s)	305, 398, 400, 811, 897
Hin1I	GRCGYC	2 cut(s)	763, 849
Hin1II	CATG	8 cut(s)	295, 361, 534, 698, 802, 888, 951, 1020
Hin6I	GCGC	5 cut(s)	303, 396, 398, 809, 895
HinP1I	GCGC	5 cut(s)	303, 396, 398, 809, 895
HincII	GTYRAC	3 cut(s)	289, 523, 614
HindII	GTYRAC	3 cut(s)	289, 523, 614
HinfI	GANTC	5 cut(s)	17, 35, 213, 262, 683
HpaII	CCGG	2 cut(s)	39, 393
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	5 cut(s)	250, 289, 523, 580, 614
Hpy188I	TCNGA	6 cut(s)	22, 34, 688, 782, 868, 940
Hpy188III	TCNNGA	5 cut(s)	199, 424, 446, 539, 1017
Hpy8I	GTNNAC	5 cut(s)	250, 289, 523, 580, 614
Hpy99I	CGWCG	6 cut(s)	275, 278, 311, 314, 332, 524
HpyAV	CCTTC	8 cut(s)	367, 421, 703, 753, 805, 839, 891, 994
HpyCH4III	ACNGT	2 cut(s)	577, 750
HpyCH4IV	ACGT	3 cut(s)	519, 633, 732
HpyCH4V	TGCA	6 cut(s)	412, 467, 530, 534, 661, 694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 402, 473
HpyF3I	CTNAG	2 cut(s)	66, 417
HpySE526I	ACGT	3 cut(s)	519, 633, 732
Hsp92I	GRCGYC	2 cut(s)	763, 849
Hsp92II	CATG	8 cut(s)	295, 361, 534, 698, 802, 888, 951, 1020
HspAI	GCGC	5 cut(s)	303, 396, 398, 809, 895
KroI	GCCGGC	1 cut(s)	392
KroNI	GCCGGC	1 cut(s)	394
Kzo9I	GATC	5 cut(s)	176, 448, 500, 782, 868
LmnI	GCTCC	6 cut(s)	75, 229, 238, 346, 405, 437
Lsp1109I	GCAGC	5 cut(s)	565, 790, 793, 876, 879
LweI	GCATC	4 cut(s)	13, 87, 484, 643
MaeI	CTAG	2 cut(s)	786, 872
MaeII	ACGT	3 cut(s)	519, 633, 732
MaeIII	GTNAC	3 cut(s)	214, 586, 952
MalI	GATC	5 cut(s)	178, 450, 502, 784, 870
MboI	GATC	5 cut(s)	176, 448, 500, 782, 868
MboII	GAAGA	7 cut(s)	116, 119, 293, 373, 376, 398, 554
MfeI	CAATTG	1 cut(s)	704
MflI	RGATCY	2 cut(s)	448, 868
MhlI	GDGCHC	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	988
MluCI	AATT	3 cut(s)	28, 689, 704
MluNI	TGGCCA	1 cut(s)	988
MlyI	GAGTC	1 cut(s)	222
Mox20I	TGGCCA	1 cut(s)	988
Mph1103I	ATGCAT	1 cut(s)	532
MroNI	GCCGGC	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	988
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	2 cut(s)	221, 966
Msp20I	TGGCCA	1 cut(s)	988
MspI	CCGG	2 cut(s)	39, 393
MspR9I	CCNGG	3 cut(s)	317, 738, 982
MunI	CAATTG	1 cut(s)	704
Mva1269I	GAATGC	1 cut(s)	670
MvaI	CCWGG	3 cut(s)	317, 738, 982
MvnI	CGCG	3 cut(s)	303, 398, 405
MwoI	GCNNNNNNNGC	3 cut(s)	238, 402, 473
NaeI	GCCGGC	1 cut(s)	394
NdeII	GATC	5 cut(s)	176, 448, 500, 782, 868
NgoMIV	GCCGGC	1 cut(s)	392
NlaIII	CATG	8 cut(s)	295, 361, 534, 698, 802, 888, 951, 1020
NlaIV	GGNNCC	1 cut(s)	929
NmuCI	GTSAC	1 cut(s)	214
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	2 cut(s)	295, 534
PaeI	GCATGC	1 cut(s)	534
PagI	TCATGA	1 cut(s)	1016
PauI	GCGCGC	1 cut(s)	396
PciI	ACATGT	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	4 cut(s)	276, 760, 846, 948
PctI	GAATGC	1 cut(s)	670
PdiI	GCCGGC	1 cut(s)	394
PfeI	GAWTC	4 cut(s)	17, 35, 262, 683
PfoI	TCCNGGA	1 cut(s)	736
PkrI	GCNGC	6 cut(s)	257, 555, 805, 808, 891, 894
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PscI	ACATGT	1 cut(s)	291
Psp1406I	AACGTT	1 cut(s)	732
Psp6I	CCWGG	3 cut(s)	315, 736, 980
PspGI	CCWGG	3 cut(s)	315, 736, 980
PspN4I	GGNNCC	1 cut(s)	929
PspPI	GGNCC	3 cut(s)	792, 878, 944
PsuI	RGATCY	2 cut(s)	448, 868
PteI	GCGCGC	1 cut(s)	396
RseI	CAYNNNNRTG	2 cut(s)	221, 966
SalI	GTCGAC	2 cut(s)	287, 521
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	6 cut(s)	256, 554, 804, 807, 890, 893
Sau3AI	GATC	5 cut(s)	176, 448, 500, 782, 868
Sau96I	GGNCC	3 cut(s)	792, 878, 944
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	3 cut(s)	317, 738, 982
SduI	GDGCHC	1 cut(s)	243
SfaNI	GCATC	4 cut(s)	13, 87, 484, 643
SmiMI	CAYNNNNRTG	2 cut(s)	221, 966
SphI	GCATGC	1 cut(s)	534
Sse9I	AATT	3 cut(s)	28, 689, 704
SsiI	CCGC	5 cut(s)	171, 255, 301, 403, 459
SspMI	CTAG	2 cut(s)	786, 872
StyD4I	CCNGG	3 cut(s)	315, 736, 980
StyI	CCWWGG	2 cut(s)	342, 931
TaaI	ACNGT	2 cut(s)	577, 750
TaiI	ACGT	3 cut(s)	522, 636, 735
TaqI	TCGA	6 cut(s)	288, 423, 499, 522, 754, 840
TasI	AATT	3 cut(s)	28, 689, 704
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	4 cut(s)	17, 35, 262, 683
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	5 cut(s)	553, 803, 806, 889, 892
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	7 cut(s)	17, 105, 374, 696, 787, 873, 1005
TspGWI	ACGGA	1 cut(s)	739
TspRI	CASTG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	2 cut(s)	295, 534
XmiI	GTMKAC	3 cut(s)	249, 288, 522
XspI	CTAG	2 cut(s)	786, 872
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.