Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000206.1

Orthogroup ID

OG0018676

Physical Location & Seq

Genomic Coordinates Reverse (-)

71332 .. 72955

Gene Structure 1624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000206.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atggaagagttgagatctcttttgttaattgctgaagatgagattaatcaaacagtgatgtccatgtctttgtcctccaagactgctatggctacaattggtgatacttccagagctcaagctactaatgctgcatgtgtctctaatgatatgatgtttacaaatagtattgcgttttctacttctgagcatatgatgagaaacacatatgctaaagacttaaattatggttccatggtgattgaaaatgagagtgttaagcaattggttgcagaagaatgtgttaaacaagaagcagaaattgcaagttttgttgtcaaagaagagtctgatgataactcaacttctaattccactgtggctgaaagtaagagtgttgaccaactgattacagaagattgtgctcatgaagacattcaaattcctcaagattcgaagaagaaacaagctggagaagactcttattcagataaagaggagcaattgaagtctcaagaacatgtttttctggatgagaaagttgcttctaatagagataagtttctacaagaaaagaaatctacttctttcgttgtaatagaatctacttctgattctgttacggcaaagacaatggttttcgaggtgtggagaaggcagtggaagagtgagttcgaaggcagcaggaagctgaccttgatcatcagcaagaacgagatgtccagggtgagcttctccgatgagttggactccgatgtggaagaggaagaacaagatggcggagcctctgagagagagagagagagagagagtgatctaagagcaatgagagagaggagagagatcgatggcattgatgtagctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1666

Protein Analysis

282

Amino Acids

31.89

Weight (kDa)

4.52

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018676)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8357603.1_g000001 Rmu_sc0000206.1_g000010 Rmu_sc0002183.1_g000014 Rmu_ssc0000252.1_g000016 Rmu_ssc0000486.1_g000035
rosa_roxburghii	Rroxscaffold_1G00009430 Rroxscaffold_1G00029980 Rroxscaffold_2G00082580 Rroxscaffold_4G00317760 Rroxscaffold_5G00359590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	759
AcsI	RAATTY	1 cut(s)	420
AcuI	CTGAAG	1 cut(s)	54
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	3 cut(s)	245, 419, 487
AjnI	CCWGG	1 cut(s)	701
AloI	GAACNNNNNNTCC	2 cut(s)	683, 715
AluBI	AGCT	6 cut(s)	116, 122, 449, 670, 711, 842
AluI	AGCT	6 cut(s)	116, 122, 449, 670, 711, 842
Alw21I	GWGCWC	2 cut(s)	118, 406
Alw26I	GTCTC	2 cut(s)	145, 495
ApeKI	GCWGC	2 cut(s)	131, 660
ApoI	RAATTY	1 cut(s)	420
AseI	ATTAAT	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	414
AsuHPI	GGTGA	3 cut(s)	113, 250, 718
AsuII	TTCGAA	2 cut(s)	434, 654
BanII	GRGCYC	1 cut(s)	118
BbsI	GAAGAC	2 cut(s)	417, 462
Bbv12I	GWGCWC	2 cut(s)	118, 406
BbvI	GCAGC	2 cut(s)	118, 672
BccI	CCATC	2 cut(s)	749, 821
BceAI	ACGGC	1 cut(s)	618
BciT130I	CCWGG	1 cut(s)	703
BclI	TGATCA	1 cut(s)	678
BcoDI	GTCTC	2 cut(s)	145, 495
BglII	AGATCT	1 cut(s)	14
BisI	GCNGC	2 cut(s)	132, 661
BlsI	GCNGC	2 cut(s)	133, 662
Bme1390I	CCNGG	1 cut(s)	703
BmiI	GGNNCC	2 cut(s)	232, 763
BmrFI	CCNGG	1 cut(s)	703
BpiI	GAAGAC	2 cut(s)	417, 462
BplI	GAGNNNNNCTC	2 cut(s)	713, 745
BpmI	CTGGAG	1 cut(s)	471
Bpu14I	TTCGAA	2 cut(s)	434, 654
BpuEI	CTTGAG	3 cut(s)	102, 411, 477
Bsa29I	ATCGAT	1 cut(s)	825
BsaJI	CCNNGG	2 cut(s)	234, 702
Bse3DI	GCAATG	1 cut(s)	810
BseBI	CCWGG	1 cut(s)	703
BseCI	ATCGAT	1 cut(s)	825
BseDI	CCNNGG	2 cut(s)	234, 702
BseGI	GGATG	1 cut(s)	517
BseMI	GCAATG	1 cut(s)	810
BseMII	CTCAG	2 cut(s)	177, 759
BseRI	GAGGAG	2 cut(s)	491, 829
BseXI	GCAGC	2 cut(s)	118, 672
BshVI	ATCGAT	1 cut(s)	825
BsiHKAI	GWGCWC	2 cut(s)	118, 406
BsmAI	GTCTC	2 cut(s)	145, 495
Bsp119I	TTCGAA	2 cut(s)	434, 654
Bsp1286I	GDGCHC	2 cut(s)	118, 406
Bsp143I	GATC	4 cut(s)	14, 678, 793, 822
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	1 cut(s)	759
BspCNI	CTCAG	2 cut(s)	178, 760
BspDI	ATCGAT	1 cut(s)	825
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	232, 763
BspT104I	TTCGAA	2 cut(s)	434, 654
BsrDI	GCAATG	1 cut(s)	810
BssECI	CCNNGG	2 cut(s)	234, 702
BssMI	GATC	4 cut(s)	14, 678, 793, 822
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	703
Bst4CI	ACNGT	2 cut(s)	55, 358
Bst6I	CTCTTC	3 cut(s)	318, 638, 735
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstBI	TTCGAA	2 cut(s)	434, 654
BstDEI	CTNAG	3 cut(s)	186, 768, 797
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	517
BstKTI	GATC	4 cut(s)	17, 681, 796, 825
BstMAI	GTCTC	2 cut(s)	145, 495
BstMBI	GATC	4 cut(s)	14, 678, 793, 822
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 302
BstNI	CCWGG	1 cut(s)	703
BstNSI	RCATGY	2 cut(s)	138, 503
BstSCI	CCNGG	1 cut(s)	701
BstV1I	GCAGC	2 cut(s)	118, 672
BstV2I	GAAGAC	2 cut(s)	417, 462
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
Bsu15I	ATCGAT	1 cut(s)	825
BsuTUI	ATCGAT	1 cut(s)	825
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	517
BtsI	GCAGTG	1 cut(s)	644
BtsIMutI	CAGTG	3 cut(s)	60, 354, 644
CciI	TCATGA	1 cut(s)	406
ClaI	ATCGAT	1 cut(s)	825
CviAII	CATG	5 cut(s)	64, 135, 235, 407, 500
CviJI	RGCY	9 cut(s)	92, 116, 122, 362, 449, 670, 711, 764, 842
CviKI_1	RGCY	9 cut(s)	92, 116, 122, 362, 449, 670, 711, 764, 842
DdeI	CTNAG	3 cut(s)	186, 768, 797
DpnI	GATC	4 cut(s)	16, 680, 795, 824
DpnII	GATC	4 cut(s)	14, 678, 793, 822
Eam1104I	CTCTTC	3 cut(s)	318, 638, 735
EarI	CTCTTC	3 cut(s)	318, 638, 735
EciI	GGCGGA	1 cut(s)	774
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	701
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	5 cut(s)	67, 138, 238, 410, 503
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FatI	CATG	5 cut(s)	63, 134, 234, 406, 499
FauNDI	CATATG	2 cut(s)	192, 208
FbaI	TGATCA	1 cut(s)	678
Fnu4HI	GCNGC	2 cut(s)	132, 661
FokI	GGATG	1 cut(s)	524
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	2 cut(s)	132, 661
GluI	GCNGC	2 cut(s)	132, 661
GsuI	CTGGAG	1 cut(s)	471
Hin1II	CATG	5 cut(s)	67, 138, 238, 410, 503
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	6 cut(s)	326, 431, 458, 581, 593, 728
HphI	GGTGA	3 cut(s)	113, 250, 718
Hpy166II	GTNNAC	2 cut(s)	159, 379
Hpy188I	TCNGA	7 cut(s)	187, 331, 469, 592, 718, 733, 769
Hpy188III	TCNNGA	5 cut(s)	111, 407, 428, 494, 509
Hpy8I	GTNNAC	2 cut(s)	159, 379
HpyAV	CCTTC	2 cut(s)	627, 650
HpyCH4III	ACNGT	2 cut(s)	55, 358
HpyCH4V	TGCA	3 cut(s)	134, 272, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 302
HpyF3I	CTNAG	3 cut(s)	186, 768, 797
Hsp92II	CATG	5 cut(s)	67, 138, 238, 410, 503
Ksp22I	TGATCA	1 cut(s)	678
Kzo9I	GATC	4 cut(s)	14, 678, 793, 822
LmnI	GCTCC	2 cut(s)	478, 761
LpnPI	CCDG	6 cut(s)	124, 435, 494, 649, 688, 715
Lsp1109I	GCAGC	2 cut(s)	118, 672
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	4 cut(s)	16, 680, 795, 824
MboI	GATC	4 cut(s)	14, 678, 793, 822
MfeI	CAATTG	3 cut(s)	96, 263, 482
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	2 cut(s)	118, 406
MluCI	AATT	8 cut(s)	27, 96, 223, 263, 300, 349, 420, 482
MlyI	GAGTC	3 cut(s)	335, 452, 722
MmeI	TCCRAC	1 cut(s)	705
MnlI	CCTC	7 cut(s)	85, 435, 469, 616, 736, 775, 807
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	6 cut(s)	26, 45, 221, 258, 285, 847
MspR9I	CCNGG	1 cut(s)	703
MunI	CAATTG	3 cut(s)	96, 263, 482
MvaI	CCWGG	1 cut(s)	703
MwoI	GCNNNNNNNGC	2 cut(s)	128, 302
NcoI	CCATGG	1 cut(s)	234
NdeI	CATATG	2 cut(s)	192, 208
NdeII	GATC	4 cut(s)	14, 678, 793, 822
NlaIII	CATG	5 cut(s)	67, 138, 238, 410, 503
NlaIV	GGNNCC	2 cut(s)	232, 763
NspI	RCATGY	2 cut(s)	138, 503
NspV	TTCGAA	2 cut(s)	434, 654
PagI	TCATGA	1 cut(s)	406
PciI	ACATGT	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	431, 581, 593
PkrI	GCNGC	2 cut(s)	133, 662
PleI	GAGTC	3 cut(s)	334, 452, 722
PpsI	GAGTC	3 cut(s)	334, 452, 722
PscI	ACATGT	1 cut(s)	499
PshBI	ATTAAT	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	701
PspGI	CCWGG	1 cut(s)	701
PspN4I	GGNNCC	2 cut(s)	232, 763
PsuI	RGATCY	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	6 cut(s)	26, 45, 221, 258, 285, 847
SatI	GCNGC	2 cut(s)	132, 661
Sau3AI	GATC	4 cut(s)	14, 678, 793, 822
SchI	GAGTC	3 cut(s)	335, 452, 722
ScrFI	CCNGG	1 cut(s)	703
SduI	GDGCHC	2 cut(s)	118, 406
SetI	ASST	8 cut(s)	118, 124, 451, 627, 672, 677, 713, 844
SfuI	TTCGAA	2 cut(s)	434, 654
SmlI	CTYRAG	3 cut(s)	117, 426, 492
SmoI	CTYRAG	3 cut(s)	117, 426, 492
Sse9I	AATT	8 cut(s)	27, 96, 223, 263, 300, 349, 420, 482
SsiI	CCGC	1 cut(s)	759
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	701
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	55, 358
TaqI	TCGA	4 cut(s)	434, 621, 654, 825
TasI	AATT	8 cut(s)	27, 96, 223, 263, 300, 349, 420, 482
TfiI	GAWTC	3 cut(s)	431, 581, 593
Tru1I	TTAA	6 cut(s)	26, 45, 221, 258, 285, 847
Tru9I	TTAA	6 cut(s)	26, 45, 221, 258, 285, 847
TscAI	CASTG	3 cut(s)	60, 361, 644
TseI	GCWGC	2 cut(s)	131, 660
TspDTI	ATGAA	1 cut(s)	423
TspRI	CASTG	3 cut(s)	60, 361, 644
VspI	ATTAAT	1 cut(s)	45
XapI	RAATTY	1 cut(s)	420
XceI	RCATGY	2 cut(s)	138, 503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.