Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018676

Physical Location & Seq

Genomic Coordinates Forward (+)

5368152 .. 5376874

Gene Structure 8723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAGAGTGTTAAGCAATTGGTTACAGAAGAATATGTTCAAAAAGAAGAAGCGAGAAGTTGCAAGTTTTGTTGTCAAAGAAGAGTCCGATGATAACTCAACTTCGATTCCACCGTGGCTGAAAGTAGGAGTGTTGAGCAACCGATTACAGAAGATTGTGCTCATGAAGACATTCAAATTCCTCAAGATTCGAAGAAGAAACAAGTCTGGAGAAGACGAATATGTTTTTCCGGATGAGAAAGTTGCTTCTAATAAAGATAAGTTTCTACAAGAAAAGAAATCTACTTCTTTCGTTGTAATAGAATCTACTTCGATTCTCGTTTCGCGTTCTCTTTGTTCAATCCCTGAACTTTCATTTTTGAGTCCTCTTATGAGTTCTCTTGGCAACAAAAGCGATAATGCAACCAACTCAAGAATAGAAGCTCAGGCACCTTTTATGTCATCCGAGCCGGCTCAAGAGTACAATCAAGGAAAGCAAACATTTGTTGCAAAGTCAACAAGGAGTGAAAAGAAAAGGAATGATGAATTGCCATTTTACAAATGCAAAAATATCGAATCTGGTTTATCTCTTGATAATGCTTTCAAGAGGAAATATCACCAAGATTTTCATGATCAAGGTGTAAGAGGTGAACAACGAGATGATTATGACTACAGCCCTCAATCTCTAGTTGGATCTTATCCGATACAAGGCTCTTGGCAGCTCTTATCTACTCCTTCATATCAAACTAAACTGCATTGTAGGCAGGCCTCTTATCCTCTCGAAGCTATGTCAATCACCGCCACTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

262

Amino Acids

30.08

Weight (kDa)

9.44

Isoelectric Point (pI)

63.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018676)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8357603.1_g000001 Rmu_sc0000206.1_g000010 Rmu_sc0002183.1_g000014 Rmu_ssc0000252.1_g000016 Rmu_ssc0000486.1_g000035
rosa_roxburghii	Rroxscaffold_1G00009430 Rroxscaffold_1G00029980 Rroxscaffold_2G00082580 Rroxscaffold_4G00317760 Rroxscaffold_5G00359590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AccII	CGCG	1 cut(s)	325
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	1 cut(s)	777
AclWI	GGATC	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	1 cut(s)	686
AgsI	TTSAA	4 cut(s)	40, 175, 339, 583
AluBI	AGCT	3 cut(s)	422, 700, 764
AluI	AGCT	3 cut(s)	422, 700, 764
Alw21I	GWGCWC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	679
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	1 cut(s)	744
ApeKI	GCWGC	1 cut(s)	697
ApoI	RAATTY	1 cut(s)	176
Asp700I	GAANNNNTTC	2 cut(s)	35, 170
AsuHPI	GGTGA	3 cut(s)	587, 638, 766
AsuII	TTCGAA	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	427
BbsI	GAAGAC	2 cut(s)	173, 219
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	709
BcgI	CGANNNNNNTGC	2 cut(s)	532, 566
BclI	TGATCA	1 cut(s)	610
BfaI	CTAG	1 cut(s)	665
BfmI	CTRYAG	1 cut(s)	649
BisI	GCNGC	1 cut(s)	698
BlsI	GCNGC	1 cut(s)	699
BmiI	GGNNCC	1 cut(s)	429
BpiI	GAAGAC	2 cut(s)	173, 219
BpmI	CTGGAG	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	190
BpuEI	CTTGAG	3 cut(s)	167, 394, 438
BsaJI	CCNNGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	686
Bse118I	RCCGGY	1 cut(s)	448
BseAI	TCCGGA	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	2 cut(s)	238, 440
BseLI	CCNNNNNNNGG	1 cut(s)	686
BseMII	CTCAG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	709
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	1 cut(s)	746
BshNI	GGYRCC	1 cut(s)	427
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	230, 449
BslI	CCNNNNNNNGG	1 cut(s)	686
BsnI	GGCC	1 cut(s)	746
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	610, 671
BspACI	CCGC	1 cut(s)	777
BspANI	GGCC	1 cut(s)	746
BspCNI	CTCAG	1 cut(s)	436
BspEI	TCCGGA	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	325
BspHI	TCATGA	2 cut(s)	162, 607
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	679
BspT104I	TTCGAA	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	448
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	2 cut(s)	610, 671
Bst4CI	ACNGT	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	75
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	450, 744
BstDEI	CTNAG	1 cut(s)	423
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	238, 440
BstFNI	CGCG	1 cut(s)	325
BstKTI	GATC	2 cut(s)	613, 674
BstMBI	GATC	2 cut(s)	610, 671
BstMWI	GCNNNNNNNGC	2 cut(s)	390, 739
BstSFI	CTRYAG	1 cut(s)	649
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	709
BstV2I	GAAGAC	2 cut(s)	173, 219
BstX2I	RGATCY	1 cut(s)	671
BstYI	RGATCY	1 cut(s)	671
BsuRI	GGCC	1 cut(s)	746
BtgI	CCRYGG	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	238, 440
Cac8I	GCNNGC	2 cut(s)	450, 744
CciI	TCATGA	2 cut(s)	162, 607
Cfr10I	RCCGGY	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	2 cut(s)	163, 608
CviJI	RGCY	9 cut(s)	118, 422, 448, 452, 654, 690, 700, 746, 764
CviKI_1	RGCY	9 cut(s)	118, 422, 448, 452, 654, 690, 700, 746, 764
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	2 cut(s)	612, 673
DpnII	GATC	2 cut(s)	610, 671
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	746
FaeI	CATG	2 cut(s)	166, 611
FaiI	YATR	9 cut(s)	35, 164, 222, 371, 437, 609, 645, 718, 767
FatI	CATG	2 cut(s)	162, 607
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	1 cut(s)	698
FokI	GGATG	2 cut(s)	245, 427
Fsp4HI	GCNGC	1 cut(s)	698
FspBI	CTAG	1 cut(s)	665
GluI	GCNGC	1 cut(s)	698
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	746
HapII	CCGG	2 cut(s)	230, 449
Hin1II	CATG	2 cut(s)	166, 611
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HinfI	GANTC	7 cut(s)	83, 106, 187, 302, 313, 361, 554
HpaII	CCGG	2 cut(s)	230, 449
HphI	GGTGA	3 cut(s)	587, 638, 766
Hpy166II	GTNNAC	2 cut(s)	495, 629
Hpy188I	TCNGA	3 cut(s)	88, 445, 681
Hpy8I	GTNNAC	2 cut(s)	495, 629
HpyAV	CCTTC	1 cut(s)	723
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	62, 401, 488, 543, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	390, 739
HpyF3I	CTNAG	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	166, 611
Kpn2I	TCCGGA	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	448
KroNI	GCCGGC	1 cut(s)	450
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	2 cut(s)	610, 671
LpnPI	CCDG	7 cut(s)	192, 243, 357, 410, 462, 543, 728
Lsp1109I	GCAGC	1 cut(s)	709
MaeI	CTAG	1 cut(s)	665
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	2 cut(s)	612, 673
MboI	GATC	2 cut(s)	610, 671
MboII	GAAGA	8 cut(s)	40, 58, 92, 163, 178, 204, 207, 224
MfeI	CAATTG	1 cut(s)	16
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	3 cut(s)	16, 176, 524
MlyI	GAGTC	2 cut(s)	92, 370
MmeI	TCCRAC	1 cut(s)	649
MnlI	CCTC	7 cut(s)	191, 375, 579, 617, 666, 757, 765
MroI	TCCGGA	1 cut(s)	229
MroNI	GCCGGC	1 cut(s)	448
MroXI	GAANNNNTTC	2 cut(s)	35, 170
MseI	TTAA	1 cut(s)	11
MspI	CCGG	2 cut(s)	230, 449
MunI	CAATTG	1 cut(s)	16
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	2 cut(s)	390, 739
NaeI	GCCGGC	1 cut(s)	450
NdeII	GATC	2 cut(s)	610, 671
NgoMIV	GCCGGC	1 cut(s)	448
NlaIII	CATG	2 cut(s)	166, 611
NlaIV	GGNNCC	1 cut(s)	429
NspV	TTCGAA	1 cut(s)	190
PagI	TCATGA	2 cut(s)	162, 607
PceI	AGGCCT	1 cut(s)	746
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PdiI	GCCGGC	1 cut(s)	450
PdmI	GAANNNNTTC	2 cut(s)	35, 170
PfeI	GAWTC	5 cut(s)	106, 187, 302, 313, 554
PkrI	GCNGC	1 cut(s)	699
PleI	GAGTC	2 cut(s)	91, 369
PpsI	GAGTC	2 cut(s)	91, 369
PspN4I	GGNNCC	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	671
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	1 cut(s)	698
Sau3AI	GATC	2 cut(s)	610, 671
SchI	GAGTC	2 cut(s)	92, 370
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	6 cut(s)	424, 433, 619, 628, 702, 766
SfcI	CTRYAG	1 cut(s)	649
SfuI	TTCGAA	1 cut(s)	190
SmlI	CTYRAG	3 cut(s)	182, 409, 453
SmoI	CTYRAG	3 cut(s)	182, 409, 453
Sse9I	AATT	3 cut(s)	16, 176, 524
SseBI	AGGCCT	1 cut(s)	746
SsiI	CCGC	1 cut(s)	777
SspMI	CTAG	1 cut(s)	665
StuI	AGGCCT	1 cut(s)	746
TaaI	ACNGT	1 cut(s)	114
TaqI	TCGA	5 cut(s)	104, 190, 311, 552, 759
TasI	AATT	3 cut(s)	16, 176, 524
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	5 cut(s)	106, 187, 302, 313, 554
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TseI	GCWGC	1 cut(s)	697
TspDTI	ATGAA	5 cut(s)	179, 342, 537, 596, 705
XapI	RAATTY	1 cut(s)	176
XmnI	GAANNNNTTC	2 cut(s)	35, 170
XspI	CTAG	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.