Protein of unknown function (DUF1666)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_co8357603.1_g000001 Rmu_sc0000206.1_g000010 Rmu_sc0002183.1_g000014 Rmu_ssc0000252.1_g000016 Rmu_ssc0000486.1_g000035 |
| rosa_roxburghii | Rroxscaffold_1G00009430 Rroxscaffold_1G00029980 Rroxscaffold_2G00082580 Rroxscaffold_4G00317760 Rroxscaffold_5G00359590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 114 |
| AccIII | TCCGGA | 1 cut(s) | 140 |
| AciI | CCGC | 1 cut(s) | 7 |
| AcoI | YGGCCR | 1 cut(s) | 14 |
| AcsI | RAATTY | 2 cut(s) | 130, 156 |
| AcuI | CTGAAG | 1 cut(s) | 57 |
| AgeI | ACCGGT | 1 cut(s) | 124 |
| AgsI | TTSAA | 2 cut(s) | 155, 223 |
| Alw26I | GTCTC | 1 cut(s) | 231 |
| Aor13HI | TCCGGA | 1 cut(s) | 140 |
| AoxI | GGCC | 1 cut(s) | 14 |
| ApeKI | GCWGC | 1 cut(s) | 259 |
| ApoI | RAATTY | 2 cut(s) | 130, 156 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 78, 110 |
| AsiGI | ACCGGT | 1 cut(s) | 124 |
| AsuC2I | CCSGG | 1 cut(s) | 51 |
| AsuHPI | GGTGA | 1 cut(s) | 139 |
| BbvI | GCAGC | 1 cut(s) | 246 |
| BcnI | CCSGG | 1 cut(s) | 51 |
| BcoDI | GTCTC | 1 cut(s) | 231 |
| BisI | GCNGC | 2 cut(s) | 7, 260 |
| BlsI | GCNGC | 2 cut(s) | 8, 261 |
| Bme1390I | CCNGG | 1 cut(s) | 51 |
| BmiI | GGNNCC | 2 cut(s) | 55, 139 |
| BmrFI | CCNGG | 1 cut(s) | 51 |
| BmsI | GCATC | 1 cut(s) | 50 |
| BpuEI | CTTGAG | 1 cut(s) | 213 |
| BpuMI | CCSGG | 1 cut(s) | 51 |
| BsaWI | WCCGGW | 2 cut(s) | 124, 140 |
| Bse118I | RCCGGY | 2 cut(s) | 12, 124 |
| BseAI | TCCGGA | 1 cut(s) | 140 |
| BseGI | GGATG | 2 cut(s) | 96, 252 |
| BseRI | GAGGAG | 1 cut(s) | 227 |
| BseXI | GCAGC | 1 cut(s) | 246 |
| BshFI | GGCC | 1 cut(s) | 16 |
| BshTI | ACCGGT | 1 cut(s) | 124 |
| BsiSI | CCGG | 4 cut(s) | 13, 50, 125, 141 |
| BsmAI | GTCTC | 1 cut(s) | 231 |
| BsnI | GGCC | 1 cut(s) | 16 |
| Bsp13I | TCCGGA | 1 cut(s) | 140 |
| Bsp143I | GATC | 1 cut(s) | 25 |
| BspACI | CCGC | 1 cut(s) | 7 |
| BspANI | GGCC | 1 cut(s) | 16 |
| BspEI | TCCGGA | 1 cut(s) | 140 |
| BspHI | TCATGA | 1 cut(s) | 264 |
| BspLI | GGNNCC | 2 cut(s) | 55, 139 |
| BsrFI | RCCGGY | 2 cut(s) | 12, 124 |
| BssAI | RCCGGY | 2 cut(s) | 12, 124 |
| BssMI | GATC | 1 cut(s) | 25 |
| Bst6I | CTCTTC | 2 cut(s) | 84, 107 |
| BstF5I | GGATG | 2 cut(s) | 96, 252 |
| BstKTI | GATC | 1 cut(s) | 28 |
| BstMAI | GTCTC | 1 cut(s) | 231 |
| BstMBI | GATC | 1 cut(s) | 25 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 27 |
| BstNSI | RCATGY | 1 cut(s) | 66 |
| BstSCI | CCNGG | 1 cut(s) | 49 |
| BstV1I | GCAGC | 1 cut(s) | 246 |
| BsuRI | GGCC | 1 cut(s) | 16 |
| BtsCI | GGATG | 2 cut(s) | 96, 252 |
| CciI | TCATGA | 1 cut(s) | 264 |
| Cfr10I | RCCGGY | 2 cut(s) | 12, 124 |
| CspAI | ACCGGT | 1 cut(s) | 124 |
| CviAII | CATG | 3 cut(s) | 63, 236, 265 |
| CviJI | RGCY | 3 cut(s) | 16, 21, 49 |
| CviKI_1 | RGCY | 3 cut(s) | 16, 21, 49 |
| DpnI | GATC | 1 cut(s) | 27 |
| DpnII | GATC | 1 cut(s) | 25 |
| EaeI | YGGCCR | 1 cut(s) | 14 |
| Eam1104I | CTCTTC | 2 cut(s) | 84, 107 |
| EarI | CTCTTC | 2 cut(s) | 84, 107 |
| Eco57I | CTGAAG | 1 cut(s) | 57 |
| EcoRI | GAATTC | 1 cut(s) | 130 |
| FaeI | CATG | 3 cut(s) | 66, 239, 268 |
| FaiI | YATR | 6 cut(s) | 64, 114, 237, 266, 276, 298 |
| FatI | CATG | 3 cut(s) | 62, 235, 264 |
| Fnu4HI | GCNGC | 2 cut(s) | 7, 260 |
| FokI | GGATG | 2 cut(s) | 83, 259 |
| Fsp4HI | GCNGC | 2 cut(s) | 7, 260 |
| GluI | GCNGC | 2 cut(s) | 7, 260 |
| HaeIII | GGCC | 1 cut(s) | 16 |
| HapII | CCGG | 4 cut(s) | 13, 50, 125, 141 |
| Hin1II | CATG | 3 cut(s) | 66, 239, 268 |
| HinfI | GANTC | 3 cut(s) | 167, 194, 239 |
| HpaII | CCGG | 4 cut(s) | 13, 50, 125, 141 |
| HphI | GGTGA | 1 cut(s) | 139 |
| Hpy166II | GTNNAC | 1 cut(s) | 122 |
| Hpy188I | TCNGA | 2 cut(s) | 172, 205 |
| Hpy188III | TCNNGA | 4 cut(s) | 141, 164, 230, 265 |
| Hpy8I | GTNNAC | 1 cut(s) | 122 |
| HpyCH4IV | ACGT | 1 cut(s) | 145 |
| HpyCH4V | TGCA | 1 cut(s) | 278 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 27 |
| HpySE526I | ACGT | 1 cut(s) | 145 |
| Hsp92II | CATG | 3 cut(s) | 66, 239, 268 |
| Kpn2I | TCCGGA | 1 cut(s) | 140 |
| Kzo9I | GATC | 1 cut(s) | 25 |
| LpnPI | CCDG | 5 cut(s) | 26, 63, 120, 138, 154 |
| Lsp1109I | GCAGC | 1 cut(s) | 246 |
| LweI | GCATC | 1 cut(s) | 50 |
| MaeII | ACGT | 1 cut(s) | 145 |
| MaeIII | GTNAC | 1 cut(s) | 146 |
| MalI | GATC | 1 cut(s) | 27 |
| MboI | GATC | 1 cut(s) | 25 |
| MboII | GAAGA | 6 cut(s) | 94, 97, 101, 187, 203, 280 |
| MluCI | AATT | 3 cut(s) | 130, 156, 218 |
| MnlI | CCTC | 4 cut(s) | 41, 85, 110, 205 |
| MroI | TCCGGA | 1 cut(s) | 140 |
| MspI | CCGG | 4 cut(s) | 13, 50, 125, 141 |
| MspR9I | CCNGG | 1 cut(s) | 51 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 27 |
| NciI | CCSGG | 1 cut(s) | 51 |
| NdeII | GATC | 1 cut(s) | 25 |
| NlaIII | CATG | 3 cut(s) | 66, 239, 268 |
| NlaIV | GGNNCC | 2 cut(s) | 55, 139 |
| NspI | RCATGY | 1 cut(s) | 66 |
| PagI | TCATGA | 1 cut(s) | 264 |
| PfeI | GAWTC | 3 cut(s) | 167, 194, 239 |
| PinAI | ACCGGT | 1 cut(s) | 124 |
| PkrI | GCNGC | 2 cut(s) | 8, 261 |
| PsiI | TTATAA | 1 cut(s) | 114 |
| PspN4I | GGNNCC | 2 cut(s) | 55, 139 |
| SatI | GCNGC | 2 cut(s) | 7, 260 |
| Sau3AI | GATC | 1 cut(s) | 25 |
| ScrFI | CCNGG | 1 cut(s) | 51 |
| SetI | ASST | 3 cut(s) | 96, 139, 148 |
| SfaNI | GCATC | 1 cut(s) | 50 |
| SmlI | CTYRAG | 1 cut(s) | 228 |
| SmoI | CTYRAG | 1 cut(s) | 228 |
| Sse9I | AATT | 3 cut(s) | 130, 156, 218 |
| SsiI | CCGC | 1 cut(s) | 7 |
| StyD4I | CCNGG | 1 cut(s) | 49 |
| TaiI | ACGT | 1 cut(s) | 148 |
| TaqI | TCGA | 1 cut(s) | 44 |
| TasI | AATT | 3 cut(s) | 130, 156, 218 |
| TauI | GCSGC | 1 cut(s) | 9 |
| TfiI | GAWTC | 3 cut(s) | 167, 194, 239 |
| TseI | GCWGC | 1 cut(s) | 259 |
| TspDTI | ATGAA | 2 cut(s) | 149, 281 |
| XapI | RAATTY | 2 cut(s) | 130, 156 |
| XceI | RCATGY | 1 cut(s) | 66 |