Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000252.1

Orthogroup ID

OG0018676

Physical Location & Seq

Genomic Coordinates Reverse (-)

89041 .. 89886

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000252.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggtgattgaaaatgagagtgctaagcaattggttacagaagaatgtgttcaaaaagaagaagcagaagttgcaagttttgttgtcaaagaagagtctgatgataactcaacttctgattccactgtggctgaaagtcagagtgttgagcaactgattacaaaagattgtgcttatcaagacattcaaattcctcaagattcgaagaagaaacaagctggagaagactcttatacagataaagaggagcaattgaactctcaagaacatgtttttctgtatgagaaagttgcttctaataaagataagtttctacaagaaaagaaatctacttcttttgttgtaacagaagtagattctgattctgtttcaggttctttttgttcgatccctgagctttcatttatgagtcctcttatgagttctcttggcaacaaaagtgataatgcaaccaactcaagaacagaagctcaggcaccttttacgacatctgagcaggttcaagagtacaatcaaggaaagcaaacatttgttgcaaagtcaacaaggagtgaaaagcaaaggaatgatgaattgccattttacaaatgcaaaaatatcgaagctggtttatctcttgataatgctttcaggagggaatatcaccaagattttcatgatcaaggtgtaagaggtgaacaacacaatgattatgattacaagcctcaatctctacttggagcttatccgatacaaggctcttggcagctgttatccactcattcatatcaaactaaactacattgtaggcaggcctcttatcctttgaagctatatcaatcactgccgctcaatgatcctggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1666

Protein Analysis

281

Amino Acids

31.83

Weight (kDa)

4.79

Isoelectric Point (pI)

62.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018676)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8357603.1_g000001 Rmu_sc0000206.1_g000010 Rmu_sc0002183.1_g000014 Rmu_ssc0000252.1_g000016 Rmu_ssc0000486.1_g000035
rosa_roxburghii	Rroxscaffold_1G00009430 Rroxscaffold_1G00029980 Rroxscaffold_2G00082580 Rroxscaffold_4G00317760 Rroxscaffold_5G00359590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AccB1I	GGYRCC	1 cut(s)	475
AccBSI	CCGCTC	1 cut(s)	829
AciI	CCGC	1 cut(s)	827
AclWI	GGATC	2 cut(s)	382, 830
AcsI	RAATTY	1 cut(s)	189
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	734
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	6 cut(s)	11, 53, 188, 256, 503, 808
AjnI	CCWGG	1 cut(s)	838
AluBI	AGCT	7 cut(s)	218, 397, 470, 605, 722, 748, 811
AluI	AGCT	7 cut(s)	218, 397, 470, 605, 722, 748, 811
AlwI	GGATC	2 cut(s)	382, 830
AoxI	GGCC	1 cut(s)	792
ApeKI	GCWGC	1 cut(s)	745
ApoI	RAATTY	1 cut(s)	189
Asp700I	GAANNNNTTC	1 cut(s)	48
AsuHPI	GGTGA	3 cut(s)	16, 635, 686
AsuII	TTCGAA	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	757
BcgI	CGANNNNNNTGC	2 cut(s)	580, 614
BciT130I	CCWGG	1 cut(s)	840
BclI	TGATCA	1 cut(s)	658
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	2 cut(s)	746, 827
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	2 cut(s)	747, 828
Bme1390I	CCNGG	1 cut(s)	840
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	840
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	2 cut(s)	393, 471
Bpu1102I	GCTNAGC	1 cut(s)	24
Bpu14I	TTCGAA	1 cut(s)	203
BpuEI	CTTGAG	3 cut(s)	180, 246, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
BseBI	CCWGG	1 cut(s)	840
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMII	CTCAG	3 cut(s)	384, 483, 485
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	757
BshFI	GGCC	1 cut(s)	794
BshNI	GGYRCC	1 cut(s)	475
BslI	CCNNNNNNNGG	1 cut(s)	734
BsnI	GGCC	1 cut(s)	794
Bsp119I	TTCGAA	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	387, 658, 835
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	1 cut(s)	827
BspANI	GGCC	1 cut(s)	794
BspCNI	CTCAG	3 cut(s)	385, 484, 484
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	487
BspPI	GGATC	2 cut(s)	382, 830
BspT104I	TTCGAA	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	475
BsrBI	CCGCTC	1 cut(s)	829
BssMI	GATC	3 cut(s)	387, 658, 835
Bst2UI	CCWGG	1 cut(s)	840
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstBI	TTCGAA	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	792
BstDEI	CTNAG	4 cut(s)	24, 393, 471, 492
BstKTI	GATC	3 cut(s)	390, 661, 838
BstMBI	GATC	3 cut(s)	387, 658, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	840
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	838
BstV1I	GCAGC	1 cut(s)	757
BstV2I	GAAGAC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	794
BtsI	GCAGTG	1 cut(s)	821
BtsIMutI	CAGTG	2 cut(s)	123, 821
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	1 cut(s)	792
CciI	TCATGA	1 cut(s)	655
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	2 cut(s)	269, 656
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	4 cut(s)	24, 393, 471, 492
DpnI	GATC	3 cut(s)	389, 660, 837
DpnII	GATC	3 cut(s)	387, 658, 835
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	794
EcoRII	CCWGG	1 cut(s)	838
FaeI	CATG	2 cut(s)	272, 659
FaiI	YATR	9 cut(s)	234, 270, 282, 407, 419, 657, 693, 766, 814
FatI	CATG	2 cut(s)	268, 655
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	2 cut(s)	746, 827
Fsp4HI	GCNGC	2 cut(s)	746, 827
GluI	GCNGC	2 cut(s)	746, 827
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	794
Hin1II	CATG	2 cut(s)	272, 659
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HinfI	GANTC	7 cut(s)	95, 119, 200, 227, 356, 362, 409
HphI	GGTGA	3 cut(s)	16, 635, 686
Hpy166II	GTNNAC	2 cut(s)	543, 677
Hpy188I	TCNGA	6 cut(s)	100, 118, 141, 361, 493, 729
Hpy188III	TCNNGA	8 cut(s)	179, 197, 263, 459, 503, 617, 631, 656
Hpy8I	GTNNAC	2 cut(s)	543, 677
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	4 cut(s)	74, 449, 536, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	4 cut(s)	24, 393, 471, 492
Hsp92II	CATG	2 cut(s)	272, 659
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	3 cut(s)	387, 658, 835
LmnI	GCTCC	2 cut(s)	247, 719
LpnPI	CCDG	9 cut(s)	204, 357, 405, 458, 482, 591, 616, 776, 825
Lsp1109I	GCAGC	1 cut(s)	757
MaeIII	GTNAC	2 cut(s)	34, 343
MalI	GATC	3 cut(s)	389, 660, 837
MbiI	CCGCTC	1 cut(s)	829
MboI	GATC	3 cut(s)	387, 658, 835
MboII	GAAGA	6 cut(s)	53, 71, 104, 217, 220, 236
MfeI	CAATTG	2 cut(s)	29, 251
MluCI	AATT	4 cut(s)	29, 189, 251, 572
MlyI	GAGTC	3 cut(s)	104, 221, 418
MnlI	CCTC	7 cut(s)	204, 238, 423, 627, 665, 714, 805
MroXI	GAANNNNTTC	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	748
MspR9I	CCNGG	1 cut(s)	840
MunI	CAATTG	2 cut(s)	29, 251
MvaI	CCWGG	1 cut(s)	840
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	3 cut(s)	387, 658, 835
NlaIII	CATG	2 cut(s)	272, 659
NlaIV	GGNNCC	1 cut(s)	477
NspI	RCATGY	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	203
PagI	TCATGA	1 cut(s)	655
PceI	AGGCCT	1 cut(s)	794
PciI	ACATGT	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	4 cut(s)	119, 200, 356, 362
PkrI	GCNGC	2 cut(s)	747, 828
PleI	GAGTC	3 cut(s)	103, 221, 417
PpsI	GAGTC	3 cut(s)	103, 221, 417
PscI	ACATGT	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	838
PspGI	CCWGG	1 cut(s)	838
PspN4I	GGNNCC	1 cut(s)	477
PvuII	CAGCTG	1 cut(s)	748
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SatI	GCNGC	2 cut(s)	746, 827
Sau3AI	GATC	3 cut(s)	387, 658, 835
SchI	GAGTC	3 cut(s)	104, 221, 418
ScrFI	CCNGG	1 cut(s)	840
SfuI	TTCGAA	1 cut(s)	203
SmlI	CTYRAG	3 cut(s)	195, 261, 457
SmoI	CTYRAG	3 cut(s)	195, 261, 457
Sse9I	AATT	4 cut(s)	29, 189, 251, 572
SseBI	AGGCCT	1 cut(s)	794
SsiI	CCGC	1 cut(s)	827
StuI	AGGCCT	1 cut(s)	794
StyD4I	CCNGG	1 cut(s)	838
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	203, 386, 600
TasI	AATT	4 cut(s)	29, 189, 251, 572
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	1 cut(s)	829
TfiI	GAWTC	4 cut(s)	119, 200, 356, 362
TscAI	CASTG	2 cut(s)	130, 828
TseI	GCWGC	1 cut(s)	745
TspDTI	ATGAA	4 cut(s)	390, 585, 644, 753
TspRI	CASTG	2 cut(s)	130, 828
XapI	RAATTY	1 cut(s)	189
XceI	RCATGY	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.