Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018676

Physical Location & Seq

Genomic Coordinates Reverse (-)

43227374 .. 43239684

Gene Structure 12311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTTCTCCAAGCCGTTTCTTCCTCTTCCGGCCACCACCGGACGTGAAACTCGGGGTAGCATCGCCTCAACCTTGCGCACCTCCCCATGGCCGCCTTGCAGCCTATCTCCGCCGGTAGCCGCCGCAAGGGAAACCCGGTTTGAGTCCGAAATCGAAGCTTTACAATTTTACTTTGTGAGAGTGAATTGTAATAATGAACTCGAGGTTTTCGATATGTGGGATTCTGGGTCGATTGTCGGGGACTTTGATGGGCATTCAAAACGGGTTTTGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

91

Amino Acids

10.15

Weight (kDa)

5.26

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018676)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8357603.1_g000001 Rmu_sc0000206.1_g000010 Rmu_sc0002183.1_g000014 Rmu_ssc0000252.1_g000016 Rmu_ssc0000486.1_g000035
rosa_roxburghii	Rroxscaffold_1G00009430 Rroxscaffold_1G00029980 Rroxscaffold_2G00082580 Rroxscaffold_4G00317760 Rroxscaffold_5G00359590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	77
AciI	CCGC	4 cut(s)	92, 110, 120, 123
AcoI	YGGCCR	2 cut(s)	30, 89
AfiI	CCNNNNNNNGG	2 cut(s)	87, 126
AgsI	TTSAA	1 cut(s)	258
AjiI	CACGTC	1 cut(s)	44
AluBI	AGCT	2 cut(s)	158, 273
AluI	AGCT	2 cut(s)	158, 273
Ama87I	CYCGRG	2 cut(s)	51, 200
AoxI	GGCC	2 cut(s)	30, 89
ApeKI	GCWGC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	136
AvaI	CYCGRG	2 cut(s)	51, 200
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	136
BisI	GCNGC	4 cut(s)	92, 100, 120, 123
BlsI	GCNGC	4 cut(s)	93, 101, 121, 124
Bme1390I	CCNGG	1 cut(s)	136
BmeT110I	CYCGRG	2 cut(s)	51, 200
BmgBI	CACGTC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 126
Bse118I	RCCGGY	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	87, 126
BseXI	GCAGC	1 cut(s)	111
BshFI	GGCC	2 cut(s)	32, 91
BsiHKCI	CYCGRG	2 cut(s)	51, 200
BsiSI	CCGG	4 cut(s)	29, 39, 113, 136
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	87, 126
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	32, 91
BsoBI	CYCGRG	2 cut(s)	51, 200
Bsp19I	CCATGG	1 cut(s)	86
BspACI	CCGC	4 cut(s)	92, 110, 120, 123
BspANI	GGCC	2 cut(s)	32, 91
BsrFI	RCCGGY	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	30
BstDSI	CCRYGG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	32, 91
BtgI	CCRYGG	1 cut(s)	86
BtgZI	GCGATG	1 cut(s)	46
BtrI	CACGTC	1 cut(s)	44
CfoI	GCGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	112
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	7 cut(s)	13, 32, 91, 102, 119, 158, 273
CviKI_1	RGCY	7 cut(s)	13, 32, 91, 102, 119, 158, 273
EaeI	YGGCCR	2 cut(s)	30, 89
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	86
Eco88I	CYCGRG	2 cut(s)	51, 200
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	1 cut(s)	90
FaiI	YATR	2 cut(s)	88, 215
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	92, 100, 120, 123
Fsp4HI	GCNGC	4 cut(s)	92, 100, 120, 123
FspI	TGCGCA	1 cut(s)	77
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	4 cut(s)	92, 100, 120, 123
HaeIII	GGCC	2 cut(s)	32, 91
HapII	CCGG	4 cut(s)	29, 39, 113, 136
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	2 cut(s)	143, 221
HpaII	CCGG	4 cut(s)	29, 39, 113, 136
Hpy188I	TCNGA	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	1 cut(s)	76
LpnPI	CCDG	5 cut(s)	42, 52, 126, 149, 210
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	1 cut(s)	69
MaeII	ACGT	1 cut(s)	43
MboII	GAAGA	2 cut(s)	11, 17
MluCI	AATT	2 cut(s)	164, 184
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	4 cut(s)	33, 76, 91, 196
MspI	CCGG	4 cut(s)	29, 39, 113, 136
MspR9I	CCNGG	1 cut(s)	136
Mva1269I	GAATGC	1 cut(s)	253
NciI	CCSGG	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	86
NlaIII	CATG	1 cut(s)	90
NsbI	TGCGCA	1 cut(s)	77
PaeR7I	CTCGAG	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	4 cut(s)	93, 101, 121, 124
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PspXI	VCTCGAGB	1 cut(s)	200
SatI	GCNGC	4 cut(s)	92, 100, 120, 123
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	136
SetI	ASST	6 cut(s)	46, 74, 83, 160, 207, 275
SfaNI	GCATC	1 cut(s)	69
Sfr274I	CTCGAG	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	164, 184
SsiI	CCGC	4 cut(s)	92, 110, 120, 123
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	86
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	4 cut(s)	153, 201, 210, 230
TasI	AATT	2 cut(s)	164, 184
TauI	GCSGC	3 cut(s)	94, 122, 125
TfiI	GAWTC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	210
XhoI	CTCGAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.