Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000226.1

Orthogroup ID

OG0010910

Physical Location & Seq

Genomic Coordinates Forward (+)

19980 .. 22088

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

atgttcgagttccaagctgggagaaatctaccgggtttgatcttcgaccacgatgtgaatgaggatgaacaattattaagtcctgctgcagaagagcccccattggagatcaagcaccaaactaagtcacttgaagccgaaaagataccaagtcctaaatggttgccttcagatatggaattgatgaaggaaaggttttcgaagctgcttttgggtgaagacatgtcaggtggtggaaagggtgtctcttcagccttggctttatcaaatgccataacaaatctagcagcatccgtttttggagaaacaagaaaactagagcccatgtctcctgataggaaagcgagatgggtgaaagagattggctggcttctgtccgtgactgatcacattgtggaatttgtcccttcacaacaaaatggaacaaacatggagataatgatgactcaacaaaggaaggatctgcacattaacattcctgccctacgcaagctcgacgccatgctccttggccaccttgagagttttgcaaacccaagtgagttctggtatgtgaaaagagatgcccaagatgatgagaaaggtagcaaaccagagagaaatgatgaaaaatggtggttaccaactgtcaaagtcccatcagaaggtctatcggatgagtgtcgaaaatggctgcagtttcagaaggattctgtccaccaagtactaaaagcagcaatggcaatcaatgctcaagtactatcagaaatggatgtacctgagaactatattgaatcccttcccaagaatggtagagctagcttgggtgatacaatctacaagagcataacagaggagcactttgaccctctagaattcctaacgagcatggacttgtcctcagagcacaaagtggtagacctgaaagacaggatcgaggcctccattgtgatttggaagaggaagatgaacctcaaggatggaaagtcttcatggagttctggggtgagtttcgagaagagggaacgatttgaagagagagtagagaccgtcttactcctaatcaaacagaagttcccaggaattccccaatctgcacttgacataagtaaaattcaatacaataaggatgtagggtatgctatcctggaaagctattcaagggtaatagaaagcttggctttcaatgtcatgtcgatgatagatgatgtcctttttgctgataaaaagatgcgaacggagaaatcaaacaggaggctttcagtggattcatatgcctcagaagatcctgacaggttgagttgtacagggacaccgagttcaaagacattgtttgagttcatgggatggaatcaactagaggagaccgatgtggataagaataacaaggagagctattataaagaagacagtgatcacaagattatgagcaaaccaccacttgctgtaagcacgaagaggttttcctatttagaaaagctcgagaagttgagtggtctaagaagtccaacagctcgccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0017016 GO:0017048 GO:0019899 GO:0021700 GO:0022622 GO:0030154 GO:0031267 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051020 GO:0065007 GO:0065009 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light PRONE

Protein Analysis

500

Amino Acids

57.08

Weight (kDa)

5.53

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	57 - 405	1.2e-166	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19560 AT5G19560 AT5G19560 AT5G19560 AT5G19560
fragaria_vesca	FvH4_1g04400
malus_domestica	MD02G1043700.v1.1 MD15G1182200.v1.1
prunus_persica	Prupe.7G233200_v2.0.a1
pyrus_communis	pycom15g16460
rosa_chinensis	RchiOBHm_Chr2g0090051
rosa_laevigata	RLG00000016081
rosa_multiflora	Rmu_sc0000226.1_g000006
rosa_roxburghii	Rroxscaffold_2G00151440
rosa_rugosa	Rorug02G0005000
rosa_samantha	Rh2AG050600 Rh2BG049200 Rh2CG051400 Rh2DG050800
rosa_wichuraiana	Rw2G004000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1380
AccI	GTMKAC	1 cut(s)	897
AclWI	GGATC	3 cut(s)	468, 920, 1259
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	4 cut(s)	398, 854, 1062, 1092
AcuI	CTGAAG	2 cut(s)	153, 234
AcyI	GRCGYC	1 cut(s)	498
AdeI	CACNNNGTG	3 cut(s)	55, 394, 892
AfaI	GTAC	4 cut(s)	705, 738, 756, 1285
AfiI	CCNNNNNNNGG	2 cut(s)	644, 788
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	7 cut(s)	134, 773, 1013, 1097, 1140, 1165, 1302
AjnI	CCWGG	2 cut(s)	1057, 1125
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AloI	GAACNNNNNNTCC	2 cut(s)	1282, 1314
Alw21I	GWGCWC	2 cut(s)	840, 888
Alw26I	GTCTC	4 cut(s)	250, 333, 1019, 1337
AlwI	GGATC	3 cut(s)	468, 920, 1259
Ama87I	CYCGRG	1 cut(s)	1460
AoxI	GGCC	2 cut(s)	511, 918
ApeKI	GCWGC	5 cut(s)	86, 205, 287, 673, 713
ApoI	RAATTY	4 cut(s)	398, 854, 1062, 1092
Asp700I	GAANNNNTTC	2 cut(s)	777, 967
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	4 cut(s)	227, 364, 818, 997
AsuII	TTCGAA	1 cut(s)	200
AsuNHI	GCTAGC	1 cut(s)	797
AvaI	CYCGRG	1 cut(s)	1460
BalI	TGGCCA	1 cut(s)	513
BanII	GRGCYC	2 cut(s)	99, 324
BbsI	GAAGAC	3 cut(s)	225, 960, 1392
Bbv12I	GWGCWC	2 cut(s)	840, 888
BbvI	GCAGC	5 cut(s)	73, 192, 299, 660, 725
BccI	CCATC	4 cut(s)	342, 646, 953, 1320
BciT130I	CCWGG	2 cut(s)	1059, 1127
BclI	TGATCA	2 cut(s)	385, 1393
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	4 cut(s)	250, 333, 1019, 1337
BfaI	CTAG	5 cut(s)	284, 317, 798, 851, 1337
BfmI	CTRYAG	2 cut(s)	87, 674
BisI	GCNGC	5 cut(s)	87, 206, 288, 674, 714
BlsI	GCNGC	5 cut(s)	88, 207, 289, 675, 715
BmcAI	AGTACT	2 cut(s)	705, 738
Bme1390I	CCNGG	3 cut(s)	33, 1059, 1127
BmeT110I	CYCGRG	1 cut(s)	1460
BmrFI	CCNGG	3 cut(s)	33, 1059, 1127
BmsI	GCATC	3 cut(s)	299, 553, 1200
BmtI	GCTAGC	1 cut(s)	801
BpiI	GAAGAC	3 cut(s)	225, 960, 1392
Bpu14I	TTCGAA	1 cut(s)	200
BpuEI	CTTGAG	3 cut(s)	539, 717, 938
BpuMI	CCSGG	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	498
BsaI	GGTCTC	2 cut(s)	1019, 1337
BsaJI	CCNNGG	3 cut(s)	255, 508, 1057
Bsc4I	CCNNNNNNNGG	2 cut(s)	644, 788
Bse3DI	GCAATG	1 cut(s)	723
BseBI	CCWGG	2 cut(s)	1059, 1127
BseDI	CCNNGG	3 cut(s)	255, 508, 1057
BseGI	GGATG	7 cut(s)	70, 290, 661, 757, 964, 1114, 1331
BseLI	CCNNNNNNNGG	2 cut(s)	644, 788
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	3 cut(s)	750, 894, 1272
BseRI	GAGGAG	2 cut(s)	848, 1355
BseXI	GCAGC	5 cut(s)	73, 192, 299, 660, 725
BseYI	CCCAGC	1 cut(s)	17
BsgI	GTGCAG	2 cut(s)	449, 1059
BshFI	GGCC	2 cut(s)	513, 920
BsiHKAI	GWGCWC	2 cut(s)	840, 888
BsiHKCI	CYCGRG	1 cut(s)	1460
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	3 cut(s)	389, 620, 1303
BslI	CCNNNNNNNGG	2 cut(s)	644, 788
BsmAI	GTCTC	4 cut(s)	250, 333, 1019, 1337
BsmFI	GGGAC	3 cut(s)	389, 620, 1303
BsnI	GGCC	2 cut(s)	513, 920
Bso31I	GGTCTC	2 cut(s)	1019, 1337
BsoBI	CYCGRG	1 cut(s)	1460
Bsp119I	TTCGAA	1 cut(s)	200
Bsp1286I	GDGCHC	4 cut(s)	99, 324, 840, 888
Bsp1407I	TGTACA	1 cut(s)	1283
Bsp143I	GATC	7 cut(s)	39, 108, 385, 460, 912, 1264, 1393
BspANI	GGCC	2 cut(s)	513, 920
BspCNI	CTCAG	3 cut(s)	751, 893, 1271
BspMAI	CTGCAG	2 cut(s)	91, 678
BspOI	GCTAGC	1 cut(s)	801
BspPI	GGATC	3 cut(s)	468, 920, 1259
BspQI	GCTCTTC	1 cut(s)	87
BspT104I	TTCGAA	1 cut(s)	200
BspTNI	GGTCTC	2 cut(s)	1019, 1337
BsrDI	GCAATG	1 cut(s)	723
BsrGI	TGTACA	1 cut(s)	1283
BssECI	CCNNGG	3 cut(s)	255, 508, 1057
BssMI	GATC	7 cut(s)	39, 108, 385, 460, 912, 1264, 1393
BssNI	GRCGYC	1 cut(s)	498
BssT1I	CCWWGG	2 cut(s)	255, 508
Bst2UI	CCWGG	2 cut(s)	1059, 1127
Bst4CI	ACNGT	3 cut(s)	628, 1030, 1391
Bst6I	CTCTTC	6 cut(s)	87, 253, 932, 992, 1008, 1430
BstACI	GRCGYC	1 cut(s)	498
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstAUI	TGTACA	1 cut(s)	1283
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	4 cut(s)	368, 491, 799, 1495
BstDEI	CTNAG	5 cut(s)	123, 759, 880, 1258, 1478
BstEII	GGTNACC	1 cut(s)	618
BstF5I	GGATG	7 cut(s)	70, 290, 661, 757, 964, 1114, 1331
BstKTI	GATC	7 cut(s)	42, 111, 388, 463, 915, 1267, 1396
BstMAI	GTCTC	4 cut(s)	250, 333, 1019, 1337
BstMBI	GATC	7 cut(s)	39, 108, 385, 460, 912, 1264, 1393
BstMWI	GCNNNNNNNGC	2 cut(s)	719, 728
BstNI	CCWGG	2 cut(s)	1059, 1127
BstNSI	RCATGY	1 cut(s)	226
BstPI	GGTNACC	1 cut(s)	618
BstSCI	CCNGG	3 cut(s)	31, 1057, 1125
BstSFI	CTRYAG	2 cut(s)	87, 674
BstV1I	GCAGC	5 cut(s)	73, 192, 299, 660, 725
BstV2I	GAAGAC	3 cut(s)	225, 960, 1392
BstX2I	RGATCY	2 cut(s)	460, 1264
BstYI	RGATCY	2 cut(s)	460, 1264
BsuRI	GGCC	2 cut(s)	513, 920
BtsCI	GGATG	7 cut(s)	70, 290, 661, 757, 964, 1114, 1331
BtsIMutI	CAGTG	2 cut(s)	1248, 1396
Cac8I	GCNNGC	4 cut(s)	368, 491, 799, 1495
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	4 cut(s)	704, 737, 755, 1284
CviAII	CATG	8 cut(s)	223, 325, 430, 502, 868, 972, 1171, 1321
CviQI	GTAC	4 cut(s)	704, 737, 755, 1284
DdeI	CTNAG	5 cut(s)	123, 759, 880, 1258, 1478
DpnI	GATC	7 cut(s)	41, 110, 387, 462, 914, 1266, 1395
DpnII	GATC	7 cut(s)	39, 108, 385, 460, 912, 1264, 1393
DraIII	CACNNNGTG	3 cut(s)	55, 394, 892
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	6 cut(s)	87, 253, 932, 992, 1008, 1430
EarI	CTCTTC	6 cut(s)	87, 253, 932, 992, 1008, 1430
Eco130I	CCWWGG	2 cut(s)	255, 508
Eco147I	AGGCCT	1 cut(s)	920
Eco24I	GRGCYC	2 cut(s)	99, 324
Eco31I	GGTCTC	2 cut(s)	1019, 1337
Eco57I	CTGAAG	2 cut(s)	153, 234
Eco88I	CYCGRG	1 cut(s)	1460
Eco91I	GGTNACC	1 cut(s)	618
EcoO65I	GGTNACC	1 cut(s)	618
EcoRI	GAATTC	2 cut(s)	854, 1062
EcoRII	CCWGG	2 cut(s)	1057, 1125
EcoT14I	CCWWGG	2 cut(s)	255, 508
EcoT38I	GRGCYC	2 cut(s)	99, 324
ErhI	CCWWGG	2 cut(s)	255, 508
FaeI	CATG	8 cut(s)	226, 328, 433, 505, 871, 975, 1174, 1324
FalI	AAGNNNNNCTT	2 cut(s)	1144, 1176
FaqI	GGGAC	3 cut(s)	389, 620, 1303
FatI	CATG	8 cut(s)	222, 324, 429, 501, 867, 971, 1170, 1320
FauNDI	CATATG	1 cut(s)	1252
FbaI	TGATCA	2 cut(s)	385, 1393
FblI	GTMKAC	1 cut(s)	897
Fnu4HI	GCNGC	5 cut(s)	87, 206, 288, 674, 714
FokI	GGATG	7 cut(s)	77, 277, 668, 764, 971, 1121, 1338
FriOI	GRGCYC	2 cut(s)	99, 324
Fsp4HI	GCNGC	5 cut(s)	87, 206, 288, 674, 714
FspBI	CTAG	5 cut(s)	284, 317, 798, 851, 1337
GluI	GCNGC	5 cut(s)	87, 206, 288, 674, 714
GsaI	CCCAGC	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	513, 920
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	1 cut(s)	506
Hin1I	GRCGYC	1 cut(s)	498
Hin1II	CATG	8 cut(s)	226, 328, 433, 505, 871, 975, 1174, 1324
HindIII	AAGCTT	1 cut(s)	1153
HinfI	GANTC	5 cut(s)	445, 689, 773, 1247, 1330
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	4 cut(s)	227, 364, 818, 997
Hpy166II	GTNNAC	2 cut(s)	697, 898
Hpy188I	TCNGA	7 cut(s)	172, 643, 655, 684, 745, 883, 1261
Hpy188III	TCNNGA	5 cut(s)	332, 851, 994, 1268, 1462
Hpy8I	GTNNAC	2 cut(s)	697, 898
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	7 cut(s)	177, 181, 417, 451, 638, 679, 788
HpyCH4III	ACNGT	3 cut(s)	628, 1030, 1391
HpyCH4V	TGCA	5 cut(s)	89, 466, 530, 676, 1076
HpyF10VI	GCNNNNNNNGC	2 cut(s)	719, 728
HpyF3I	CTNAG	5 cut(s)	123, 759, 880, 1258, 1478
Hsp92I	GRCGYC	1 cut(s)	498
Hsp92II	CATG	8 cut(s)	226, 328, 433, 505, 871, 975, 1174, 1324
Ksp22I	TGATCA	2 cut(s)	385, 1393
Kzo9I	GATC	7 cut(s)	39, 108, 385, 460, 912, 1264, 1393
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	510, 835
Lsp1109I	GCAGC	5 cut(s)	73, 192, 299, 660, 725
LweI	GCATC	3 cut(s)	299, 553, 1200
MaeI	CTAG	5 cut(s)	284, 317, 798, 851, 1337
MaeIII	GTNAC	3 cut(s)	126, 379, 618
MalI	GATC	7 cut(s)	41, 110, 387, 462, 914, 1266, 1395
MboI	GATC	7 cut(s)	39, 108, 385, 460, 912, 1264, 1393
MflI	RGATCY	2 cut(s)	460, 1264
MhlI	GDGCHC	4 cut(s)	99, 324, 840, 888
MlsI	TGGCCA	1 cut(s)	513
MluCI	AATT	6 cut(s)	71, 179, 398, 854, 1062, 1092
MluNI	TGGCCA	1 cut(s)	513
MlyI	GAGTC	1 cut(s)	439
Mox20I	TGGCCA	1 cut(s)	513
MroXI	GAANNNNTTC	2 cut(s)	777, 967
MscI	TGGCCA	1 cut(s)	513
MseI	TTAA	2 cut(s)	77, 471
MslI	CAYNNNNRTG	1 cut(s)	1175
Msp20I	TGGCCA	1 cut(s)	513
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	3 cut(s)	33, 1059, 1127
MvaI	CCWGG	2 cut(s)	1059, 1127
MwoI	GCNNNNNNNGC	2 cut(s)	719, 728
NciI	CCSGG	1 cut(s)	33
NdeI	CATATG	1 cut(s)	1252
NdeII	GATC	7 cut(s)	39, 108, 385, 460, 912, 1264, 1393
NheI	GCTAGC	1 cut(s)	797
NlaIII	CATG	8 cut(s)	226, 328, 433, 505, 871, 975, 1174, 1324
NmuCI	GTSAC	2 cut(s)	126, 379
NspI	RCATGY	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	200
PaeR7I	CTCGAG	1 cut(s)	1460
PceI	AGGCCT	1 cut(s)	920
PciI	ACATGT	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	87
PdmI	GAANNNNTTC	2 cut(s)	777, 967
PfeI	GAWTC	4 cut(s)	689, 773, 1247, 1330
PfoI	TCCNGGA	1 cut(s)	1125
PkrI	GCNGC	5 cut(s)	88, 207, 289, 675, 715
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PscI	ACATGT	1 cut(s)	222
PsiI	TTATAA	1 cut(s)	1380
Psp6I	CCWGG	2 cut(s)	1057, 1125
PspEI	GGTNACC	1 cut(s)	618
PspFI	CCCAGC	1 cut(s)	17
PspGI	CCWGG	2 cut(s)	1057, 1125
PstI	CTGCAG	2 cut(s)	91, 678
PsuI	RGATCY	2 cut(s)	460, 1264
RsaI	GTAC	4 cut(s)	705, 738, 756, 1285
RsaNI	GTAC	4 cut(s)	704, 737, 755, 1284
RseI	CAYNNNNRTG	1 cut(s)	1175
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	77, 471
SatI	GCNGC	5 cut(s)	87, 206, 288, 674, 714
Sau3AI	GATC	7 cut(s)	39, 108, 385, 460, 912, 1264, 1393
ScaI	AGTACT	2 cut(s)	705, 738
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	3 cut(s)	33, 1059, 1127
SduI	GDGCHC	4 cut(s)	99, 324, 840, 888
SfaNI	GCATC	3 cut(s)	299, 553, 1200
SfcI	CTRYAG	2 cut(s)	87, 674
Sfr274I	CTCGAG	1 cut(s)	1460
SfuI	TTCGAA	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	1460
SmiMI	CAYNNNNRTG	1 cut(s)	1175
SmlI	CTYRAG	4 cut(s)	518, 732, 953, 1460
SmoI	CTYRAG	4 cut(s)	518, 732, 953, 1460
Sse9I	AATT	6 cut(s)	71, 179, 398, 854, 1062, 1092
SseBI	AGGCCT	1 cut(s)	920
SspMI	CTAG	5 cut(s)	284, 317, 798, 851, 1337
StuI	AGGCCT	1 cut(s)	920
StyD4I	CCNGG	3 cut(s)	31, 1057, 1125
StyI	CCWWGG	2 cut(s)	255, 508
TaaI	ACNGT	3 cut(s)	628, 1030, 1391
TaqI	TCGA	9 cut(s)	6, 45, 200, 495, 664, 915, 993, 1175, 1461
TaqII	GACCGA	1 cut(s)	1361
TasI	AATT	6 cut(s)	71, 179, 398, 854, 1062, 1092
TatI	WGTACW	3 cut(s)	703, 736, 1283
TfiI	GAWTC	4 cut(s)	689, 773, 1247, 1330
Tru1I	TTAA	2 cut(s)	77, 471
Tru9I	TTAA	2 cut(s)	77, 471
TscAI	CASTG	2 cut(s)	1248, 1396
TseFI	GTSAC	2 cut(s)	126, 379
TseI	GCWGC	5 cut(s)	86, 205, 287, 673, 713
Tsp45I	GTSAC	2 cut(s)	126, 379
TspDTI	ATGAA	7 cut(s)	81, 200, 621, 960, 962, 1239, 1309
TspGWI	ACGGA	3 cut(s)	283, 367, 1232
TspRI	CASTG	2 cut(s)	1248, 1396
XapI	RAATTY	4 cut(s)	398, 854, 1062, 1092
XbaI	TCTAGA	1 cut(s)	850
XceI	RCATGY	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	2 cut(s)	156, 543
XhoI	CTCGAG	1 cut(s)	1460
XmiI	GTMKAC	1 cut(s)	897
XmnI	GAANNNNTTC	2 cut(s)	777, 967
XspI	CTAG	5 cut(s)	284, 317, 798, 851, 1337
ZrmI	AGTACT	2 cut(s)	705, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.