Rmu_sc0000295.1_g000038

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000295.1
OG0016934
Physical Location & Seq
Forward (+)
215933 .. 217441
1509 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1509 bp
atgcctgagaatgctgtggatgtgtttttgaagattaaaagaatgggtcttgagccacacatttggtcttgtaatatcttgctcaagtgtttggcagaagcaaacaaactggaatgtgttagaagcttattcgaatgtttgaaaaactctgggccatctcctaatgtttacacttacacagttatgatgagctttttctgtacaggatatccactgcaggatgtgggtatcagtcaggcgactgacattcttcaagaaatggagaagagtgggaaacacccaactgcagtgatatatgctgaatatattcatggactttgtaaagctggatatgttgagtttgctttggacttcatccgaaacatgcaacacagagaccaacctctcaatagttattgttataatgctatccttcgtgggttttgccaaaaaggcgaaacttgtaaagctctaaaattgttggaggaaatgaagagctacgggatggtgccagatgtttattgctacaccatattgatagatggattttgcaaggaaggggatatagagaaagctcttgctttgtttgaggaaatggagctttgtaaaataaaaccttctttggttagctatagctcactcatatacggtctttgcaaacttggattgatagatcatatgttagatatatatcgtaatctggagtctgccggtgtgtgccctgatgctatcacttgcactctcattgttgatgggtattgcagggaagggcgcttggaggaagccttgagatttatttacaagatgtatcatcaaggcataagccctaactcgtatacttataatgcagtcctcaacagtttgtgcaagcaaggaaagccagaaaaagcatgggaactaatccctcaaatgcttaaaaggaatatactcccagaagttgcaaattataatactcttataaatggctttggaaaacagttgaattcaaagaaggcctgcatggtgtatggaggaatgctcaaagctggtgtcatgcccaatacagtcacatatacaatccttatgaatatactctgccatagaggcaaaatatatgaagcttgtaacatgttcaaggaaatgagtgaaaggggtttggctgcagatgtgatttcttatacatctctaattgctgggttttgtaggatgggagacatgaagaaggcttgggtactgttcaaagaaatgttgagcaaaaaccatttgcccaatgctatcacgtatacgtgtttaatagatggtttttgcaagtcctctcgcatggattatgccagtttcttgtttgaggaaatgaagaacaaaaatgttactcctgatctggtgacttacactgttctcatcattgggtactgtaggctccggaatattgatagagcaattcagttatttgatgaaatgaagcacagtggtatctcaggggatggttttgccaatgaagctttggggctttacaccaaagattggtttgtttacaaaagattagaaagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

502

Amino Acids

57.04

Weight (kDa)

7.67

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 20 - 67 1.3e-08 PPR repeat family
PPR_2 PF13041 94 - 143 3.5e-09 PPR repeat family
PPR_long PF17177 115 - 235 1.9e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 129 - 158 4.6e-07 PPR repeat
PPR_2 PF13041 130 - 178 3e-17 PPR repeat family
MRP-S27 PF10037 135 - 192 8.9e-07 Mitochondrial 28S ribosomal protein S27
PPR_3 PF13812 152 - 208 1.4e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 161 - 193 1.7e-14 PPR repeat
PPR_2 PF13041 168 - 213 8.8e-15 PPR repeat family
PPR PF01535 168 - 195 7.5e-09 PPR repeat
PPR_2 PF13041 201 - 248 1.9e-08 PPR repeat family
TPR_24 PF23276 222 - 330 8.6e-09 Fungal tetratrico peptide repeats
PPR_3 PF13812 223 - 280 5.6e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 231 - 262 7.6e-08 PPR repeat
PPR_2 PF13041 234 - 283 4e-15 PPR repeat family
PPR_long PF17177 252 - 356 1.8e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 266 - 297 3e-08 PPR repeat
PPR PF01535 272 - 302 1.1e-06 PPR repeat
PPR_2 PF13041 273 - 304 1.5e-08 PPR repeat family
TPR_24 PF23276 277 - 402 5e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 296 - 351 6.9e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 304 - 353 2.6e-13 PPR repeat family
PPR_1 PF12854 336 - 368 1e-08 PPR repeat
PPR_2 PF13041 339 - 388 1.1e-15 PPR repeat family
PPR PF01535 342 - 372 4.2e-07 PPR repeat
TPR_24 PF23276 359 - 471 1.2e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 363 - 419 5.8e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 370 - 402 1.2e-10 PPR repeat
PPR_2 PF13041 375 - 423 3.3e-19 PPR repeat family
PPR PF01535 377 - 406 2.2e-08 PPR repeat
PPR_long PF17177 394 - 478 3.6e-09 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 405 - 438 1.4e-10 PPR repeat
PPR_2 PF13041 409 - 458 4.3e-17 PPR repeat family
PPR PF01535 412 - 442 3.9e-07 PPR repeat
PPR_3 PF13812 433 - 478 1.2e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 440 - 473 3e-11 PPR repeat
PPR_2 PF13041 444 - 480 1.8e-09 PPR repeat family
PPR PF01535 447 - 477 6.8e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016934)

Species Orthologous Gene IDs
malus_domestica MD14G1081200.v1.1
pyrus_communis pycom12g07360 pycom14g07050
rosa_chinensis RchiOBHm_Chr3g0484571
rosa_laevigata RLG00000023219
rosa_multiflora Rmu_co8455711.1_g000001 Rmu_sc0000295.1_g000038 Rmu_sc0032195.1_g000001
rosa_roxburghii Rroxscaffold_6G00397630
rosa_rugosa Rorug03G0211700
rosa_samantha Rh3AG262500 Rh3BG297800 Rh3CG294800 Rh3DG291100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 402, 822, 927, 938
AccB1I GGYRCC 1 cut(s) 487
AccB7I CCANNNNNTGG 1 cut(s) 1479
AccI GTMKAC 2 cut(s) 815, 1241
AccIII TCCGGA 1 cut(s) 1377
AcsI RAATTY 1 cut(s) 961
AfaI GTAC 3 cut(s) 202, 1191, 1367
AfiI CCNNNNNNNGG 1 cut(s) 1479
AflIII ACRYGT 2 cut(s) 1086, 1244
AgsI TTSAA 7 cut(s) 31, 142, 254, 961, 966, 1093, 1198
Alw26I GTCTC 2 cut(s) 369, 1164
Aor13HI TCCGGA 1 cut(s) 1377
AoxI GGCC 2 cut(s) 152, 972
ApeKI GCWGC 1 cut(s) 1118
ApoI RAATTY 1 cut(s) 961
ArsI GACNNNNNNTTYG 2 cut(s) 993, 1025
Asp700I GAANNNNTTC 1 cut(s) 306
AspLEI GCGC 1 cut(s) 753
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 1351
AsuII TTCGAA 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 701
BaeI ACNNNNGTAYC 2 cut(s) 1411, 1444
BanI GGYRCC 1 cut(s) 487
BbvI GCAGC 1 cut(s) 1105
BccI CCATC 7 cut(s) 163, 478, 515, 725, 1159, 1250, 1433
BcoDI GTCTC 2 cut(s) 369, 1164
BfmI CTRYAG 5 cut(s) 215, 285, 610, 1119, 1369
BfoI RGCGCY 1 cut(s) 754
BglI GCCNNNNNGGC 2 cut(s) 432, 1062
BisI GCNGC 1 cut(s) 1119
BlsI GCNGC 1 cut(s) 1120
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 2 cut(s) 489, 1376
BmsI GCATC 1 cut(s) 694
BplI GAGNNNNNCTC 2 cut(s) 981, 1013
BpmI CTGGAG 1 cut(s) 701
Bpu14I TTCGAA 1 cut(s) 132
BpuEI CTTGAG 3 cut(s) 68, 71, 787
BsaAI YACGTR 2 cut(s) 1239, 1245
BsaBI GATNNNNATC 1 cut(s) 669
BsaI GGTCTC 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 1377
Bsc4I CCNNNNNNNGG 1 cut(s) 1479
Bse118I RCCGGY 1 cut(s) 689
Bse1I ACTGG 2 cut(s) 114, 1290
Bse8I GATNNNNATC 1 cut(s) 669
BseAI TCCGGA 1 cut(s) 1377
BseGI GGATG 6 cut(s) 25, 226, 354, 489, 1170, 1444
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 1 cut(s) 1479
BseMII CTCAG 1 cut(s) 1446
BseNI ACTGG 2 cut(s) 114, 1290
BseSI GKGCMC 1 cut(s) 701
BseXI GCAGC 1 cut(s) 1105
BseYI CCCAGC 1 cut(s) 1151
BshFI GGCC 2 cut(s) 154, 974
BshNI GGYRCC 1 cut(s) 487
BsiSI CCGG 2 cut(s) 690, 1378
BslI CCNNNNNNNGG 1 cut(s) 1479
BsmAI GTCTC 2 cut(s) 369, 1164
BsmI GAATGC 2 cut(s) 16, 999
BsnI GGCC 2 cut(s) 154, 974
Bso31I GGTCTC 1 cut(s) 369
Bsp119I TTCGAA 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 701
Bsp13I TCCGGA 1 cut(s) 1377
Bsp1407I TGTACA 1 cut(s) 200
Bsp143I GATC 2 cut(s) 652, 1333
BspANI GGCC 2 cut(s) 154, 974
BspCNI CTCAG 1 cut(s) 1445
BspEI TCCGGA 1 cut(s) 1377
BspLI GGNNCC 2 cut(s) 489, 1376
BspMAI CTGCAG 3 cut(s) 219, 289, 1123
BspQI GCTCTTC 1 cut(s) 467
BspT104I TTCGAA 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 487
BspTNI GGTCTC 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 689
BsrGI TGTACA 1 cut(s) 200
BsrI ACTGG 2 cut(s) 114, 1290
BssAI RCCGGY 1 cut(s) 689
BssMI GATC 2 cut(s) 652, 1333
BssNAI GTATAC 2 cut(s) 816, 1242
Bst1107I GTATAC 2 cut(s) 816, 1242
Bst4CI ACNGT 9 cut(s) 181, 629, 839, 957, 1024, 1194, 1351, 1370, 1424
Bst6I CTCTTC 2 cut(s) 260, 467
BstAUI TGTACA 1 cut(s) 200
BstBAI YACGTR 2 cut(s) 1239, 1245
BstBI TTCGAA 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 848, 976
BstDEI CTNAG 2 cut(s) 6, 1432
BstF5I GGATG 6 cut(s) 25, 226, 354, 489, 1170, 1444
BstH2I RGCGCY 1 cut(s) 754
BstHHI GCGC 1 cut(s) 753
BstKTI GATC 2 cut(s) 655, 1336
BstMAI GTCTC 2 cut(s) 369, 1164
BstMBI GATC 2 cut(s) 652, 1333
BstMWI GCNNNNNNNGC 4 cut(s) 432, 856, 1062, 1454
BstNSI RCATGY 2 cut(s) 367, 1090
BstSFI CTRYAG 5 cut(s) 215, 285, 610, 1119, 1369
BstSLI GKGCMC 1 cut(s) 701
BstV1I GCAGC 1 cut(s) 1105
BstXI CCANNNNNNTGG 1 cut(s) 63
BstZ17I GTATAC 2 cut(s) 816, 1242
BsuRI GGCC 2 cut(s) 154, 974
BtsCI GGATG 6 cut(s) 25, 226, 354, 489, 1170, 1444
BtsI GCAGTG 2 cut(s) 212, 294
BtsIMutI CAGTG 4 cut(s) 212, 294, 1347, 1429
Cac8I GCNNGC 2 cut(s) 848, 976
CfoI GCGC 1 cut(s) 753
Cfr10I RCCGGY 1 cut(s) 689
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 3 cut(s) 201, 1190, 1366
CviAII CATG 8 cut(s) 311, 364, 870, 979, 1012, 1087, 1174, 1279
CviQI GTAC 3 cut(s) 201, 1190, 1366
DdeI CTNAG 2 cut(s) 6, 1432
DpnI GATC 2 cut(s) 654, 1335
DpnII GATC 2 cut(s) 652, 1333
Eam1104I CTCTTC 2 cut(s) 260, 467
EarI CTCTTC 2 cut(s) 260, 467
Eco147I AGGCCT 1 cut(s) 974
Eco31I GGTCTC 1 cut(s) 369
Eco32I GATATC 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 961
EcoRV GATATC 1 cut(s) 209
FaeI CATG 8 cut(s) 314, 367, 873, 982, 1015, 1090, 1177, 1282
FatI CATG 8 cut(s) 310, 363, 869, 978, 1011, 1086, 1173, 1278
FauNDI CATATG 1 cut(s) 657
FblI GTMKAC 2 cut(s) 815, 1241
Fnu4HI GCNGC 1 cut(s) 1119
FokI GGATG 6 cut(s) 32, 233, 341, 496, 1177, 1451
Fsp4HI GCNGC 1 cut(s) 1119
GlaI GCGC 1 cut(s) 752
GluI GCNGC 1 cut(s) 1119
GsaI CCCAGC 1 cut(s) 1155
GsuI CTGGAG 1 cut(s) 701
HaeII RGCGCY 1 cut(s) 754
HaeIII GGCC 2 cut(s) 154, 974
HapII CCGG 2 cut(s) 690, 1378
HhaI GCGC 1 cut(s) 753
Hin1II CATG 8 cut(s) 314, 367, 873, 982, 1015, 1090, 1177, 1282
Hin6I GCGC 1 cut(s) 751
HinP1I GCGC 1 cut(s) 751
HindIII AAGCTT 3 cut(s) 124, 1077, 1455
HinfI GANTC 1 cut(s) 683
HpaII CCGG 2 cut(s) 690, 1378
HphI GGTGA 1 cut(s) 1351
Hpy166II GTNNAC 4 cut(s) 169, 816, 1242, 1489
Hpy188I TCNGA 1 cut(s) 359
Hpy188III TCNNGA 5 cut(s) 50, 254, 680, 1331, 1378
Hpy8I GTNNAC 4 cut(s) 169, 816, 1242, 1489
HpyAV CCTTC 6 cut(s) 422, 530, 606, 740, 964, 1174
HpyCH4III ACNGT 9 cut(s) 181, 629, 839, 957, 1024, 1194, 1351, 1370, 1424
HpyCH4IV ACGT 2 cut(s) 1238, 1244
HpyF10VI GCNNNNNNNGC 4 cut(s) 432, 856, 1062, 1454
HpyF3I CTNAG 2 cut(s) 6, 1432
HpySE526I ACGT 2 cut(s) 1238, 1244
Hsp92II CATG 8 cut(s) 314, 367, 873, 982, 1015, 1090, 1177, 1282
HspAI GCGC 1 cut(s) 751
Kpn2I TCCGGA 1 cut(s) 1377
Kzo9I GATC 2 cut(s) 652, 1333
LguI GCTCTTC 1 cut(s) 467
LmnI GCTCC 2 cut(s) 577, 1380
Lsp1109I GCAGC 1 cut(s) 1105
LweI GCATC 1 cut(s) 694
MaeII ACGT 2 cut(s) 1238, 1244
MaeIII GTNAC 4 cut(s) 1024, 1082, 1324, 1339
MalI GATC 2 cut(s) 654, 1335
MboI GATC 2 cut(s) 652, 1333
MboII GAAGA 6 cut(s) 43, 242, 277, 484, 1189, 1324
MhlI GDGCHC 1 cut(s) 701
MluCI AATT 5 cut(s) 455, 922, 961, 1146, 1395
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 1 cut(s) 441
MroI TCCGGA 1 cut(s) 1377
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 3 cut(s) 36, 894, 1250
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 2 cut(s) 690, 1378
Mva1269I GAATGC 2 cut(s) 16, 999
MwoI GCNNNNNNNGC 4 cut(s) 432, 856, 1062, 1454
NdeI CATATG 1 cut(s) 657
NdeII GATC 2 cut(s) 652, 1333
NlaIII CATG 8 cut(s) 314, 367, 873, 982, 1015, 1090, 1177, 1282
NlaIV GGNNCC 2 cut(s) 489, 1376
NmuCI GTSAC 2 cut(s) 1024, 1339
NspI RCATGY 2 cut(s) 367, 1090
NspV TTCGAA 1 cut(s) 132
PceI AGGCCT 1 cut(s) 974
PciI ACATGT 1 cut(s) 1086
PciSI GCTCTTC 1 cut(s) 467
PctI GAATGC 2 cut(s) 16, 999
PdmI GAANNNNTTC 1 cut(s) 306
PflMI CCANNNNNTGG 1 cut(s) 1479
PkrI GCNGC 1 cut(s) 1120
PleI GAGTC 1 cut(s) 691
PpsI GAGTC 1 cut(s) 691
Ppu21I YACGTR 2 cut(s) 1239, 1245
PscI ACATGT 1 cut(s) 1086
PsiI TTATAA 4 cut(s) 402, 822, 927, 938
PspFI CCCAGC 1 cut(s) 1151
PspN4I GGNNCC 2 cut(s) 489, 1376
PspPI GGNCC 1 cut(s) 152
PstI CTGCAG 3 cut(s) 219, 289, 1123
RsaI GTAC 3 cut(s) 202, 1191, 1367
RsaNI GTAC 3 cut(s) 201, 1190, 1366
RseI CAYNNNNRTG 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 467
SaqAI TTAA 3 cut(s) 36, 894, 1250
SatI GCNGC 1 cut(s) 1119
Sau3AI GATC 2 cut(s) 652, 1333
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 1 cut(s) 692
SduI GDGCHC 1 cut(s) 701
SfaNI GCATC 1 cut(s) 694
SfcI CTRYAG 5 cut(s) 215, 285, 610, 1119, 1369
SfuI TTCGAA 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 3 cut(s) 50, 83, 766
SmoI CTYRAG 3 cut(s) 50, 83, 766
Sse9I AATT 5 cut(s) 455, 922, 961, 1146, 1395
SseBI AGGCCT 1 cut(s) 974
SspI AATATT 1 cut(s) 1384
StuI AGGCCT 1 cut(s) 974
TaaI ACNGT 9 cut(s) 181, 629, 839, 957, 1024, 1194, 1351, 1370, 1424
TaiI ACGT 2 cut(s) 1241, 1247
TaqI TCGA 1 cut(s) 132
TasI AATT 5 cut(s) 455, 922, 961, 1146, 1395
TatI WGTACW 1 cut(s) 200
Tru1I TTAA 3 cut(s) 36, 894, 1250
Tru9I TTAA 3 cut(s) 36, 894, 1250
TscAI CASTG 4 cut(s) 219, 294, 1354, 1429
TseFI GTSAC 2 cut(s) 1024, 1339
TseI GCWGC 1 cut(s) 1118
Tsp45I GTSAC 2 cut(s) 1024, 1339
TspRI CASTG 4 cut(s) 219, 294, 1354, 1429
Van91I CCANNNNNTGG 1 cut(s) 1479
XapI RAATTY 1 cut(s) 961
XceI RCATGY 2 cut(s) 367, 1090
XcmI CCANNNNNNNNNTGG 2 cut(s) 867, 1456
XmiI GTMKAC 2 cut(s) 815, 1241
XmnI GAANNNNTTC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.