Rmu_sc0000376.1_g000008

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000376.1
Physical Location & Seq
Reverse (-)
42977 .. 43449
473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000376.1_g000008.1.cds

Sequence Viewer

Length: 339 bp
atgaagggtctccaagtcgaacacaatgggaaatggctcactgtcgatggccctgcaaacggtttttttgttaatcttgctgaccaaatgcagattcttacaaacggaaaatacaagagtgtgatgcaccgggcaattgtgaataacaaagctgcaaggatatctatagccataccacatggaccatctgtagatacaactattgcaccttcaccagaattgtgtgacagagaaggtcaggctccaaaataccttggaatgaactacaaggaatacatacaacttcaacaaagtggcaagaattacatgaagtcaaccttcgatcacatacgagtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.53

Weight (kDa)

9.3

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018101)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 287
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 14
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 50, 182
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 204
AvaII GGWCC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 41, 193
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 1 cut(s) 337
BfmI CTRYAG 2 cut(s) 165, 189
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 50, 182
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 14
BsnI GGCC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 322
BspANI GGCC 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 253
Bst4CI ACNGT 2 cut(s) 43, 62
BstKTI GATC 1 cut(s) 325
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 2 cut(s) 165, 189
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 39
Cfr13I GGNCC 2 cut(s) 50, 182
CviAII CATG 2 cut(s) 179, 307
CviJI RGCY 5 cut(s) 37, 51, 152, 170, 242
CviKI_1 RGCY 5 cut(s) 37, 51, 152, 170, 242
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 253
Eco31I GGTCTC 1 cut(s) 14
Eco32I GATATC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 182
EcoRV GATATC 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 2 cut(s) 182, 310
FaiI YATR 6 cut(s) 167, 173, 180, 278, 308, 329
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FatI CATG 2 cut(s) 178, 306
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 337
GluI GCNGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 130
Hin1II CATG 2 cut(s) 182, 310
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HinfI GANTC 2 cut(s) 94, 333
HpaII CCGG 1 cut(s) 130
HphI GGTGA 1 cut(s) 204
Hpy166II GTNNAC 1 cut(s) 315
Hpy8I GTNNAC 1 cut(s) 315
HpyAV CCTTC 3 cut(s) 219, 227, 328
HpyCH4III ACNGT 2 cut(s) 43, 62
HpyCH4V TGCA 5 cut(s) 56, 91, 127, 155, 206
Hsp92II CATG 2 cut(s) 182, 310
Kzo9I GATC 1 cut(s) 322
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 4 cut(s) 66, 143, 224, 228
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 114
MaeI CTAG 1 cut(s) 337
MaeIII GTNAC 1 cut(s) 224
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MfeI CAATTG 1 cut(s) 135
MluCI AATT 3 cut(s) 135, 218, 301
MseI TTAA 1 cut(s) 72
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 131
MunI CAATTG 1 cut(s) 135
NciI CCSGG 1 cut(s) 131
NdeII GATC 1 cut(s) 322
NlaIII CATG 2 cut(s) 182, 310
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 2 cut(s) 50, 182
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 2 cut(s) 50, 182
ScrFI CCNGG 1 cut(s) 131
SetI ASST 5 cut(s) 154, 211, 238, 255, 320
SfaNI GCATC 1 cut(s) 114
SfcI CTRYAG 2 cut(s) 165, 189
SinI GGWCC 1 cut(s) 182
Sse9I AATT 3 cut(s) 135, 218, 301
SspMI CTAG 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 43, 62
TaqI TCGA 3 cut(s) 18, 45, 321
TasI AATT 3 cut(s) 135, 218, 301
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 3 cut(s) 17, 275, 323
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 182
XspI CTAG 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.