Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000379.1

Orthogroup ID

OG0017828

Physical Location & Seq

Genomic Coordinates Forward (+)

11025 .. 14333

Gene Structure 3309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000379.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggccgccatggctcaggctcgcaccgttgtttgccccggtcatgagcgttcgattacggatctttgttacagcccagatccttgtggtggttctcttctgctcagtgctagcgtggacaggcgggccattctgagagatggagagtgcggagattggattagaacatttgctgaacaaacttcttcagtatggaattgctctttgaatattactgcaactgcttcaacggctgcaactgcctctcactgcaatgccaaaatttgggatctgcaaacaggacggttgttgcacataattcaaagccgcaatcttgttcaatcctgtgctttctcaaagaatgggcacagtttgctaacaggaggactcggctacactatccgtatatttgatttggatcatccacatggaaaaccagaaatcttacgggagtcaaataaacctcagcgaggatcagttcttactgctgcatggctccacaacgatcaggtcatattgagtacatgtagtcttctacagggtgtcagattatgggatcgaaggagtggtaagatactccgtacactcgagactgagtcaatcgtgagaagttcagaactgagtcaaggttatatcaccactgctgctggctctacggtgacattttgggatgaaaccaactttaggtgcgtgaatcgctacaaaatgccatgcatggtacaatcagcttctttgtatgggcacaagattattgcagggggaaatgatgggcttgttcgtttgtttgatttctatactggtgaagagattgaacaatctaatatgggtgacttcggaaccgttttatgtgtgcgtttctcgcccgatggaaaatcctatgccgcgggatttgaagatggcactgttataatcaagaagttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0017015 GO:0023051 GO:0023057 GO:0030512 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:1903844 GO:1903845

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

WD40

Protein Analysis

300

Amino Acids

32.92

Weight (kDa)

7.55

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017828)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218071
rosa_laevigata	RLG00000002412 RLG00000002416
rosa_multiflora	Rmu_sc0000379.1_g000006 Rmu_sc0002029.1_g000003
rosa_roxburghii	Rroxscaffold_3G00241420
rosa_rugosa	Rorug07G0173500
rosa_samantha	Rh7AG316000 Rh7BG306300 Rh7DG314200 Rh7DG314700
rosa_wichuraiana	Rw7G026690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	887
AccB7I	CCANNNNNTGG	1 cut(s)	264
AccII	CGCG	1 cut(s)	863
AciI	CCGC	6 cut(s)	6, 124, 150, 307, 861, 863
AclWI	GGATC	6 cut(s)	69, 74, 276, 405, 460, 543
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	3 cut(s)	502, 562, 699
AfiI	CCNNNNNNNGG	4 cut(s)	89, 264, 449, 663
AflIII	ACRYGT	1 cut(s)	503
AgsI	TTSAA	6 cut(s)	208, 228, 302, 320, 791, 872
AluBI	AGCT	1 cut(s)	707
AluI	AGCT	1 cut(s)	707
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	6 cut(s)	69, 74, 276, 405, 460, 543
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	2 cut(s)	3, 126
ApeKI	GCWGC	3 cut(s)	233, 467, 623
ApoI	RAATTY	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	126
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	4 cut(s)	607, 649, 791, 818
AsuNHI	GCTAGC	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	566
BaeGI	GKGCMC	2 cut(s)	348, 723
BbsI	GAAGAC	1 cut(s)	503
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	3 cut(s)	220, 454, 610
BccI	CCATC	4 cut(s)	134, 740, 839, 869
BceAI	ACGGC	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	515
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	6 cut(s)	6, 234, 307, 468, 624, 861
BlsI	GCNGC	6 cut(s)	7, 235, 308, 469, 625, 862
Bme1390I	CCNGG	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	2 cut(s)	476, 817
BmrFI	CCNGG	1 cut(s)	39
BmtI	GCTAGC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	503
Bpu10I	CCTNAGC	2 cut(s)	15, 444
BpuMI	CCSGG	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	9, 37, 861
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 264, 449, 663
Bse1I	ACTGG	1 cut(s)	781
Bse3DI	GCAATG	1 cut(s)	259
Bse8I	GATNNNNATC	1 cut(s)	396
BseDI	CCNNGG	3 cut(s)	9, 37, 861
BseGI	GGATG	2 cut(s)	400, 655
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	4 cut(s)	89, 264, 449, 663
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	6 cut(s)	29, 118, 125, 458, 564, 590
BseNI	ACTGG	1 cut(s)	781
BseSI	GKGCMC	2 cut(s)	348, 723
BseXI	GCAGC	3 cut(s)	220, 454, 610
Bsh1236I	CGCG	1 cut(s)	863
BshFI	GGCC	2 cut(s)	5, 128
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	4 cut(s)	89, 264, 449, 663
BsmAI	GTCTC	1 cut(s)	563
BsnI	GGCC	2 cut(s)	5, 128
BsoBI	CYCGRG	1 cut(s)	566
Bsp1286I	GDGCHC	2 cut(s)	348, 723
Bsp143I	GATC	7 cut(s)	61, 79, 268, 397, 452, 484, 535
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	6 cut(s)	6, 124, 150, 307, 861, 863
BspANI	GGCC	2 cut(s)	5, 128
BspCNI	CTCAG	6 cut(s)	28, 117, 126, 457, 565, 591
BspFNI	CGCG	1 cut(s)	863
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	476, 817
BspOI	GCTAGC	1 cut(s)	114
BspPI	GGATC	6 cut(s)	69, 74, 276, 405, 460, 543
BsrDI	GCAATG	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	781
BssECI	CCNNGG	3 cut(s)	9, 37, 861
BssMI	GATC	7 cut(s)	61, 79, 268, 397, 452, 484, 535
BssT1I	CCWWGG	1 cut(s)	9
Bst4CI	ACNGT	6 cut(s)	28, 285, 350, 637, 820, 883
Bst6I	CTCTTC	2 cut(s)	102, 777
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstC8I	GCNNGC	4 cut(s)	22, 112, 126, 628
BstDEI	CTNAG	6 cut(s)	15, 104, 134, 444, 573, 599
BstDSI	CCRYGG	2 cut(s)	9, 861
BstENI	CCTNNNNNAGG	1 cut(s)	447
BstF5I	GGATG	2 cut(s)	400, 655
BstFNI	CGCG	1 cut(s)	863
BstKTI	GATC	7 cut(s)	64, 82, 271, 400, 455, 487, 538
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	7 cut(s)	61, 79, 268, 397, 452, 484, 535
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 230, 239, 352, 675, 838
BstNSI	RCATGY	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	515
BstSLI	GKGCMC	2 cut(s)	348, 723
BstUI	CGCG	1 cut(s)	863
BstV1I	GCAGC	3 cut(s)	220, 454, 610
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	3 cut(s)	61, 79, 268
BstYI	RGATCY	3 cut(s)	61, 79, 268
BsuRI	GGCC	2 cut(s)	5, 128
BtgI	CCRYGG	2 cut(s)	9, 861
BtsCI	GGATG	2 cut(s)	400, 655
BtsI	GCAGTG	2 cut(s)	247, 618
BtsIMutI	CAGTG	4 cut(s)	112, 247, 618, 879
Cac8I	GCNNGC	4 cut(s)	22, 112, 126, 628
CciI	TCATGA	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	126
Cfr42I	CCGCGG	1 cut(s)	864
Csp6I	GTAC	3 cut(s)	501, 561, 698
CviAII	CATG	7 cut(s)	10, 44, 407, 471, 504, 690, 694
CviQI	GTAC	3 cut(s)	501, 561, 698
DdeI	CTNAG	6 cut(s)	15, 104, 134, 444, 573, 599
DpnI	GATC	7 cut(s)	63, 81, 270, 399, 454, 486, 537
DpnII	GATC	7 cut(s)	61, 79, 268, 397, 452, 484, 535
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	102, 777
EarI	CTCTTC	2 cut(s)	102, 777
Eco130I	CCWWGG	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	566
EcoNI	CCTNNNNNAGG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	7 cut(s)	13, 47, 410, 474, 507, 693, 697
FatI	CATG	7 cut(s)	9, 43, 406, 470, 503, 689, 693
FauI	CCCGC	2 cut(s)	117, 856
Fnu4HI	GCNGC	6 cut(s)	6, 234, 307, 468, 624, 861
FokI	GGATG	2 cut(s)	387, 662
Fsp4HI	GCNGC	6 cut(s)	6, 234, 307, 468, 624, 861
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	6 cut(s)	6, 234, 307, 468, 624, 861
HaeIII	GGCC	2 cut(s)	5, 128
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	7 cut(s)	13, 47, 410, 474, 507, 693, 697
HinfI	GANTC	5 cut(s)	366, 431, 575, 601, 673
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	4 cut(s)	607, 649, 791, 818
Hpy166II	GTNNAC	2 cut(s)	118, 563
Hpy188I	TCNGA	4 cut(s)	135, 527, 595, 815
Hpy188III	TCNNGA	4 cut(s)	44, 568, 583, 892
Hpy8I	GTNNAC	2 cut(s)	118, 563
HpyAV	CCTTC	1 cut(s)	534
HpyCH4III	ACNGT	6 cut(s)	28, 285, 350, 637, 820, 883
HpyCH4V	TGCA	8 cut(s)	218, 236, 252, 274, 292, 470, 693, 734
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 230, 239, 352, 675, 838
HpyF3I	CTNAG	6 cut(s)	15, 104, 134, 444, 573, 599
Hsp92II	CATG	7 cut(s)	13, 47, 410, 474, 507, 693, 697
KspI	CCGCGG	1 cut(s)	864
Kzo9I	GATC	7 cut(s)	61, 79, 268, 397, 452, 484, 535
LmnI	GCTCC	1 cut(s)	480
Lsp1109I	GCAGC	3 cut(s)	220, 454, 610
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	3 cut(s)	68, 637, 806
MalI	GATC	7 cut(s)	63, 81, 270, 399, 454, 486, 537
MboI	GATC	7 cut(s)	61, 79, 268, 397, 452, 484, 535
MboII	GAAGA	5 cut(s)	89, 177, 503, 794, 884
MflI	RGATCY	3 cut(s)	61, 79, 268
MhlI	GDGCHC	2 cut(s)	348, 723
MluCI	AATT	3 cut(s)	196, 261, 297
MlyI	GAGTC	4 cut(s)	360, 440, 584, 610
MnlI	CCTC	4 cut(s)	253, 356, 443, 453
Mph1103I	ATGCAT	1 cut(s)	695
MslI	CAYNNNNRTG	2 cut(s)	252, 405
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	863
MwoI	GCNNNNNNNGC	6 cut(s)	11, 230, 239, 352, 675, 838
NciI	CCSGG	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	7 cut(s)	61, 79, 268, 397, 452, 484, 535
NheI	GCTAGC	1 cut(s)	110
NlaIII	CATG	7 cut(s)	13, 47, 410, 474, 507, 693, 697
NlaIV	GGNNCC	2 cut(s)	476, 817
NmeAIII	GCCGAG	1 cut(s)	348
NmuCI	GTSAC	2 cut(s)	637, 806
NsiI	ATGCAT	1 cut(s)	695
NspI	RCATGY	1 cut(s)	507
PaeR7I	CTCGAG	1 cut(s)	566
PagI	TCATGA	1 cut(s)	43
PciI	ACATGT	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	673
PflFI	GACNNNGTC	1 cut(s)	574
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	6 cut(s)	7, 235, 308, 469, 625, 862
PleI	GAGTC	4 cut(s)	360, 439, 583, 609
PpsI	GAGTC	4 cut(s)	360, 439, 583, 609
PscI	ACATGT	1 cut(s)	503
PsiI	TTATAA	1 cut(s)	887
PspN4I	GGNNCC	2 cut(s)	476, 817
PspPI	GGNCC	1 cut(s)	126
PsuI	RGATCY	3 cut(s)	61, 79, 268
PsyI	GACNNNGTC	1 cut(s)	574
RsaI	GTAC	3 cut(s)	502, 562, 699
RsaNI	GTAC	3 cut(s)	501, 561, 698
RseI	CAYNNNNRTG	2 cut(s)	252, 405
SacII	CCGCGG	1 cut(s)	864
SatI	GCNGC	6 cut(s)	6, 234, 307, 468, 624, 861
Sau3AI	GATC	7 cut(s)	61, 79, 268, 397, 452, 484, 535
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	4 cut(s)	360, 440, 584, 610
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	2 cut(s)	348, 723
SetI	ASST	5 cut(s)	445, 492, 610, 668, 709
SfcI	CTRYAG	1 cut(s)	515
Sfr274I	CTCGAG	1 cut(s)	566
Sfr303I	CCGCGG	1 cut(s)	864
SgrBI	CCGCGG	1 cut(s)	864
SlaI	CTCGAG	1 cut(s)	566
SmiMI	CAYNNNNRTG	2 cut(s)	252, 405
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	3 cut(s)	196, 261, 297
SsiI	CCGC	6 cut(s)	6, 124, 150, 307, 861, 863
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	6 cut(s)	28, 285, 350, 637, 820, 883
TaqI	TCGA	3 cut(s)	53, 538, 567
TasI	AATT	3 cut(s)	196, 261, 297
TatI	WGTACW	1 cut(s)	500
TauI	GCSGC	3 cut(s)	8, 309, 863
TfiI	GAWTC	1 cut(s)	673
TscAI	CASTG	4 cut(s)	112, 254, 625, 886
TseFI	GTSAC	2 cut(s)	637, 806
TseI	GCWGC	3 cut(s)	233, 467, 623
Tsp45I	GTSAC	2 cut(s)	637, 806
TspDTI	ATGAA	1 cut(s)	666
TspGWI	ACGGA	3 cut(s)	74, 371, 548
TspRI	CASTG	4 cut(s)	112, 254, 625, 886
Tth111I	GACNNNGTC	1 cut(s)	574
Van91I	CCANNNNNTGG	1 cut(s)	264
XagI	CCTNNNNNAGG	1 cut(s)	447
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	1 cut(s)	507
XhoI	CTCGAG	1 cut(s)	566
XspI	CTAG	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.