Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002029.1

Orthogroup ID

OG0017828

Physical Location & Seq

Genomic Coordinates Forward (+)

2685 .. 6309

Gene Structure 3625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002029.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atggccgccatggctcaggctcgcaccgttgtttgccccggtcatgagcgttcgattacggatctttgttacagcccagatccttgtggtggttctcttctgctcagtgctagcgtggacaggcgggccattctgagagatggagagtgcggagattggattagaacatttgctgaacaaacttcttcagtatggaattgctctttgaatattactgcaacagcttcaacggctgcaactgcctctcactgcaatgctttgctaacaggaggactcggctacactatccgtatatttgatttggatcatccacatggaaaaccagaaatcttacgggagtcaaataaacctcagcgaggatcagttcttactgctgcatggctccacaacgatcaggtcatattgagtacatgtagtcttctacagggtgtcagattatgggatcgaaggagtggtaagatactccgtacactcgagactgagtcaatcgtgagaagttcagaactgagtcaaggttatatcaccactgctgctggctctacggtgacattttgggatgaaaccgactttaggtgcgtgaatcgctacaaaatgccatgcatggtacaatcggcttctttgtatgggaacaagtttattgcagggggagatgatgggcttgttcgtttgtttgatttccatactggtgaagagattgaacaatctaatatgggtgacttcggaaccgttttatgtgtgcgtttctcgcccgatggaaaatcctatgctgcgggatttgatgatggcactgttataatcaagaagttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0017015 GO:0023051 GO:0023057 GO:0030512 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:1903844 GO:1903845

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

WD40

Protein Analysis

269

Amino Acids

29.36

Weight (kDa)

5.87

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017828)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218071
rosa_laevigata	RLG00000002412 RLG00000002416
rosa_multiflora	Rmu_sc0000379.1_g000006 Rmu_sc0002029.1_g000003
rosa_roxburghii	Rroxscaffold_3G00241420
rosa_rugosa	Rorug07G0173500
rosa_samantha	Rh7AG316000 Rh7BG306300 Rh7DG314200 Rh7DG314700
rosa_wichuraiana	Rw7G026690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	794
AciI	CCGC	4 cut(s)	6, 124, 150, 770
AclWI	GGATC	5 cut(s)	69, 74, 312, 367, 450
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	3 cut(s)	409, 469, 606
AfiI	CCNNNNNNNGG	3 cut(s)	89, 356, 570
AflIII	ACRYGT	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	208, 228, 698
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	470
AlwI	GGATC	5 cut(s)	69, 74, 312, 367, 450
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	2 cut(s)	3, 126
ApeKI	GCWGC	4 cut(s)	233, 374, 530, 767
AspS9I	GGNCC	1 cut(s)	126
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	4 cut(s)	514, 556, 698, 725
AsuNHI	GCTAGC	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	473
BbsI	GAAGAC	1 cut(s)	410
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	4 cut(s)	220, 361, 517, 754
BccI	CCATC	4 cut(s)	134, 647, 746, 776
BceAI	ACGGC	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	422
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	5 cut(s)	6, 234, 375, 531, 768
BlsI	GCNGC	5 cut(s)	7, 235, 376, 532, 769
Bme1390I	CCNGG	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	2 cut(s)	383, 724
BmrFI	CCNGG	1 cut(s)	39
BmtI	GCTAGC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	410
Bpu10I	CCTNAGC	2 cut(s)	15, 351
BpuMI	CCSGG	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	9, 37
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 356, 570
Bse1I	ACTGG	1 cut(s)	688
Bse3DI	GCAATG	1 cut(s)	259
Bse8I	GATNNNNATC	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	9, 37
BseGI	GGATG	2 cut(s)	307, 562
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	3 cut(s)	89, 356, 570
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	6 cut(s)	29, 118, 125, 365, 471, 497
BseNI	ACTGG	1 cut(s)	688
BseXI	GCAGC	4 cut(s)	220, 361, 517, 754
BshFI	GGCC	2 cut(s)	5, 128
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	89, 356, 570
BsmAI	GTCTC	1 cut(s)	470
BsnI	GGCC	2 cut(s)	5, 128
BsoBI	CYCGRG	1 cut(s)	473
Bsp143I	GATC	6 cut(s)	61, 79, 304, 359, 391, 442
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	4 cut(s)	6, 124, 150, 770
BspANI	GGCC	2 cut(s)	5, 128
BspCNI	CTCAG	6 cut(s)	28, 117, 126, 364, 472, 498
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	383, 724
BspOI	GCTAGC	1 cut(s)	114
BspPI	GGATC	5 cut(s)	69, 74, 312, 367, 450
BsrDI	GCAATG	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	688
BssECI	CCNNGG	2 cut(s)	9, 37
BssMI	GATC	6 cut(s)	61, 79, 304, 359, 391, 442
BssT1I	CCWWGG	1 cut(s)	9
Bst4CI	ACNGT	4 cut(s)	28, 544, 727, 790
Bst6I	CTCTTC	2 cut(s)	102, 684
BstC8I	GCNNGC	4 cut(s)	22, 112, 126, 535
BstDEI	CTNAG	6 cut(s)	15, 104, 134, 351, 480, 506
BstDSI	CCRYGG	1 cut(s)	9
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	307, 562
BstKTI	GATC	6 cut(s)	64, 82, 307, 362, 394, 445
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	6 cut(s)	61, 79, 304, 359, 391, 442
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 230, 239, 582, 745
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	422
BstV1I	GCAGC	4 cut(s)	220, 361, 517, 754
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	2 cut(s)	61, 79
BstYI	RGATCY	2 cut(s)	61, 79
BsuRI	GGCC	2 cut(s)	5, 128
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	307, 562
BtsI	GCAGTG	2 cut(s)	247, 525
BtsIMutI	CAGTG	4 cut(s)	112, 247, 525, 786
Cac8I	GCNNGC	4 cut(s)	22, 112, 126, 535
CciI	TCATGA	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	126
Csp6I	GTAC	3 cut(s)	408, 468, 605
CviAII	CATG	7 cut(s)	10, 44, 314, 378, 411, 597, 601
CviQI	GTAC	3 cut(s)	408, 468, 605
DdeI	CTNAG	6 cut(s)	15, 104, 134, 351, 480, 506
DpnI	GATC	6 cut(s)	63, 81, 306, 361, 393, 444
DpnII	GATC	6 cut(s)	61, 79, 304, 359, 391, 442
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	102, 684
EarI	CTCTTC	2 cut(s)	102, 684
Eco130I	CCWWGG	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	473
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	7 cut(s)	13, 47, 317, 381, 414, 600, 604
FatI	CATG	7 cut(s)	9, 43, 313, 377, 410, 596, 600
FauI	CCCGC	2 cut(s)	117, 763
Fnu4HI	GCNGC	5 cut(s)	6, 234, 375, 531, 768
FokI	GGATG	2 cut(s)	294, 569
Fsp4HI	GCNGC	5 cut(s)	6, 234, 375, 531, 768
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	5 cut(s)	6, 234, 375, 531, 768
HaeIII	GGCC	2 cut(s)	5, 128
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	7 cut(s)	13, 47, 317, 381, 414, 600, 604
HinfI	GANTC	5 cut(s)	273, 338, 482, 508, 580
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	4 cut(s)	514, 556, 698, 725
Hpy166II	GTNNAC	2 cut(s)	118, 470
Hpy188I	TCNGA	4 cut(s)	135, 434, 502, 722
Hpy188III	TCNNGA	4 cut(s)	44, 475, 490, 799
Hpy8I	GTNNAC	2 cut(s)	118, 470
HpyAV	CCTTC	1 cut(s)	441
HpyCH4III	ACNGT	4 cut(s)	28, 544, 727, 790
HpyCH4V	TGCA	6 cut(s)	218, 236, 252, 377, 600, 641
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 230, 239, 582, 745
HpyF3I	CTNAG	6 cut(s)	15, 104, 134, 351, 480, 506
Hsp92II	CATG	7 cut(s)	13, 47, 317, 381, 414, 600, 604
Kzo9I	GATC	6 cut(s)	61, 79, 304, 359, 391, 442
LmnI	GCTCC	1 cut(s)	387
Lsp1109I	GCAGC	4 cut(s)	220, 361, 517, 754
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	3 cut(s)	68, 544, 713
MalI	GATC	6 cut(s)	63, 81, 306, 361, 393, 444
MboI	GATC	6 cut(s)	61, 79, 304, 359, 391, 442
MboII	GAAGA	4 cut(s)	89, 177, 410, 701
MflI	RGATCY	2 cut(s)	61, 79
MluCI	AATT	1 cut(s)	196
MlyI	GAGTC	4 cut(s)	267, 347, 491, 517
MnlI	CCTC	4 cut(s)	253, 263, 350, 360
Mph1103I	ATGCAT	1 cut(s)	602
MslI	CAYNNNNRTG	3 cut(s)	252, 312, 684
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	5 cut(s)	11, 230, 239, 582, 745
NciI	CCSGG	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	6 cut(s)	61, 79, 304, 359, 391, 442
NheI	GCTAGC	1 cut(s)	110
NlaIII	CATG	7 cut(s)	13, 47, 317, 381, 414, 600, 604
NlaIV	GGNNCC	2 cut(s)	383, 724
NmeAIII	GCCGAG	1 cut(s)	255
NmuCI	GTSAC	2 cut(s)	544, 713
NsiI	ATGCAT	1 cut(s)	602
NspI	RCATGY	1 cut(s)	414
PaeR7I	CTCGAG	1 cut(s)	473
PagI	TCATGA	1 cut(s)	43
PciI	ACATGT	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	580
PflFI	GACNNNGTC	1 cut(s)	481
PkrI	GCNGC	5 cut(s)	7, 235, 376, 532, 769
PleI	GAGTC	4 cut(s)	267, 346, 490, 516
PpsI	GAGTC	4 cut(s)	267, 346, 490, 516
PscI	ACATGT	1 cut(s)	410
PsiI	TTATAA	1 cut(s)	794
PspN4I	GGNNCC	2 cut(s)	383, 724
PspPI	GGNCC	1 cut(s)	126
PsuI	RGATCY	2 cut(s)	61, 79
PsyI	GACNNNGTC	1 cut(s)	481
RsaI	GTAC	3 cut(s)	409, 469, 606
RsaNI	GTAC	3 cut(s)	408, 468, 605
RseI	CAYNNNNRTG	3 cut(s)	252, 312, 684
SatI	GCNGC	5 cut(s)	6, 234, 375, 531, 768
Sau3AI	GATC	6 cut(s)	61, 79, 304, 359, 391, 442
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	4 cut(s)	267, 347, 491, 517
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	5 cut(s)	226, 352, 399, 517, 575
SfcI	CTRYAG	1 cut(s)	422
Sfr274I	CTCGAG	1 cut(s)	473
SlaI	CTCGAG	1 cut(s)	473
SmiMI	CAYNNNNRTG	3 cut(s)	252, 312, 684
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	4 cut(s)	6, 124, 150, 770
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	4 cut(s)	28, 544, 727, 790
TaqI	TCGA	3 cut(s)	53, 445, 474
TasI	AATT	1 cut(s)	196
TatI	WGTACW	1 cut(s)	407
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	580
TscAI	CASTG	4 cut(s)	112, 254, 532, 793
TseFI	GTSAC	2 cut(s)	544, 713
TseI	GCWGC	4 cut(s)	233, 374, 530, 767
Tsp45I	GTSAC	2 cut(s)	544, 713
TspDTI	ATGAA	1 cut(s)	573
TspGWI	ACGGA	3 cut(s)	74, 278, 455
TspRI	CASTG	4 cut(s)	112, 254, 532, 793
Tth111I	GACNNNGTC	1 cut(s)	481
XagI	CCTNNNNNAGG	1 cut(s)	354
XceI	RCATGY	1 cut(s)	414
XhoI	CTCGAG	1 cut(s)	473
XspI	CTAG	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.